Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G02490

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042430: indole-containing compound metabolic process0.00E+00
2GO:0030149: sphingolipid catabolic process0.00E+00
3GO:0072722: response to amitrole0.00E+00
4GO:0070212: protein poly-ADP-ribosylation0.00E+00
5GO:0045792: negative regulation of cell size0.00E+00
6GO:0009626: plant-type hypersensitive response1.15E-07
7GO:0009627: systemic acquired resistance1.37E-07
8GO:0006099: tricarboxylic acid cycle1.46E-05
9GO:0051707: response to other organism2.23E-05
10GO:0006979: response to oxidative stress7.94E-05
11GO:0055081: anion homeostasis1.23E-04
12GO:0080093: regulation of photorespiration1.23E-04
13GO:0031998: regulation of fatty acid beta-oxidation1.23E-04
14GO:0009609: response to symbiotic bacterium1.23E-04
15GO:0010230: alternative respiration1.23E-04
16GO:0006032: chitin catabolic process1.75E-04
17GO:0000272: polysaccharide catabolic process2.05E-04
18GO:0046686: response to cadmium ion2.45E-04
19GO:0009617: response to bacterium2.76E-04
20GO:0015865: purine nucleotide transport2.86E-04
21GO:0019752: carboxylic acid metabolic process2.86E-04
22GO:0006123: mitochondrial electron transport, cytochrome c to oxygen2.86E-04
23GO:0080151: positive regulation of salicylic acid mediated signaling pathway2.86E-04
24GO:0010618: aerenchyma formation2.86E-04
25GO:0090057: root radial pattern formation2.86E-04
26GO:0044419: interspecies interaction between organisms2.86E-04
27GO:0031349: positive regulation of defense response2.86E-04
28GO:0070588: calcium ion transmembrane transport3.45E-04
29GO:0034976: response to endoplasmic reticulum stress3.85E-04
30GO:1900140: regulation of seedling development4.72E-04
31GO:0010272: response to silver ion4.72E-04
32GO:0048281: inflorescence morphogenesis4.72E-04
33GO:0010581: regulation of starch biosynthetic process4.72E-04
34GO:0016998: cell wall macromolecule catabolic process5.17E-04
35GO:0010200: response to chitin6.13E-04
36GO:0046836: glycolipid transport6.76E-04
37GO:0048194: Golgi vesicle budding6.76E-04
38GO:0043207: response to external biotic stimulus6.76E-04
39GO:0046902: regulation of mitochondrial membrane permeability6.76E-04
40GO:0009409: response to cold7.67E-04
41GO:0060548: negative regulation of cell death8.97E-04
42GO:0045727: positive regulation of translation8.97E-04
43GO:0000302: response to reactive oxygen species1.02E-03
44GO:0045487: gibberellin catabolic process1.13E-03
45GO:0006097: glyoxylate cycle1.13E-03
46GO:0034052: positive regulation of plant-type hypersensitive response1.13E-03
47GO:0000304: response to singlet oxygen1.13E-03
48GO:0009697: salicylic acid biosynthetic process1.13E-03
49GO:0009651: response to salt stress1.38E-03
50GO:0010942: positive regulation of cell death1.39E-03
51GO:0060918: auxin transport1.39E-03
52GO:0040008: regulation of growth1.41E-03
53GO:0001666: response to hypoxia1.45E-03
54GO:0009615: response to virus1.45E-03
55GO:0010150: leaf senescence1.50E-03
56GO:0010310: regulation of hydrogen peroxide metabolic process1.66E-03
57GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response1.66E-03
58GO:0009423: chorismate biosynthetic process1.66E-03
59GO:0042742: defense response to bacterium1.77E-03
60GO:0008219: cell death1.89E-03
61GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c1.95E-03
62GO:0009610: response to symbiotic fungus1.95E-03
63GO:0010043: response to zinc ion2.17E-03
64GO:0031540: regulation of anthocyanin biosynthetic process2.26E-03
65GO:0006102: isocitrate metabolic process2.26E-03
66GO:0009787: regulation of abscisic acid-activated signaling pathway2.26E-03
67GO:0010262: somatic embryogenesis2.58E-03
68GO:0010497: plasmodesmata-mediated intercellular transport2.58E-03
69GO:0010112: regulation of systemic acquired resistance2.91E-03
70GO:0046685: response to arsenic-containing substance2.91E-03
71GO:0006468: protein phosphorylation2.98E-03
72GO:0010205: photoinhibition3.26E-03
73GO:0043067: regulation of programmed cell death3.26E-03
74GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway3.26E-03
75GO:2000280: regulation of root development3.26E-03
76GO:0055085: transmembrane transport3.57E-03
77GO:0009870: defense response signaling pathway, resistance gene-dependent3.62E-03
78GO:0043069: negative regulation of programmed cell death3.62E-03
79GO:0009073: aromatic amino acid family biosynthetic process4.00E-03
80GO:0006913: nucleocytoplasmic transport4.00E-03
81GO:0006952: defense response4.13E-03
82GO:0010224: response to UV-B4.25E-03
83GO:0045454: cell redox homeostasis4.29E-03
84GO:0015706: nitrate transport4.39E-03
85GO:0006820: anion transport4.39E-03
86GO:0006108: malate metabolic process4.79E-03
87GO:0002237: response to molecule of bacterial origin5.20E-03
88GO:0042343: indole glucosinolate metabolic process5.63E-03
89GO:0010167: response to nitrate5.63E-03
90GO:0000162: tryptophan biosynthetic process6.06E-03
91GO:0000027: ribosomal large subunit assembly6.51E-03
92GO:0009863: salicylic acid mediated signaling pathway6.51E-03
93GO:0098542: defense response to other organism7.45E-03
94GO:0009845: seed germination7.90E-03
95GO:0016226: iron-sulfur cluster assembly7.93E-03
96GO:0031348: negative regulation of defense response7.93E-03
97GO:0071456: cellular response to hypoxia7.93E-03
98GO:0009411: response to UV8.43E-03
99GO:0009625: response to insect8.43E-03
100GO:0009686: gibberellin biosynthetic process8.43E-03
101GO:0009790: embryo development8.52E-03
102GO:0006606: protein import into nucleus9.99E-03
103GO:0042631: cellular response to water deprivation9.99E-03
104GO:0042391: regulation of membrane potential9.99E-03
105GO:0006520: cellular amino acid metabolic process1.05E-02
106GO:0010197: polar nucleus fusion1.05E-02
107GO:0009958: positive gravitropism1.05E-02
108GO:0009646: response to absence of light1.11E-02
109GO:0010183: pollen tube guidance1.16E-02
110GO:0009611: response to wounding1.19E-02
111GO:0010193: response to ozone1.22E-02
112GO:0006635: fatty acid beta-oxidation1.22E-02
113GO:0032502: developmental process1.28E-02
114GO:0006810: transport1.30E-02
115GO:0030163: protein catabolic process1.34E-02
116GO:0009639: response to red or far red light1.40E-02
117GO:0042128: nitrate assimilation1.71E-02
118GO:0009723: response to ethylene1.81E-02
119GO:0016049: cell growth1.85E-02
120GO:0080167: response to karrikin1.94E-02
121GO:0009407: toxin catabolic process2.05E-02
122GO:0006811: ion transport2.05E-02
123GO:0044550: secondary metabolite biosynthetic process2.11E-02
124GO:0048527: lateral root development2.12E-02
125GO:0010119: regulation of stomatal movement2.12E-02
126GO:0045087: innate immune response2.26E-02
127GO:0009737: response to abscisic acid2.26E-02
128GO:0006839: mitochondrial transport2.48E-02
129GO:0008283: cell proliferation2.71E-02
130GO:0010114: response to red light2.71E-02
131GO:0009751: response to salicylic acid2.83E-02
132GO:0009408: response to heat2.87E-02
133GO:0009644: response to high light intensity2.87E-02
134GO:0009636: response to toxic substance2.95E-02
135GO:0009965: leaf morphogenesis2.95E-02
136GO:0006855: drug transmembrane transport3.03E-02
137GO:0009846: pollen germination3.19E-02
138GO:0006486: protein glycosylation3.35E-02
139GO:0009909: regulation of flower development3.60E-02
140GO:0006096: glycolytic process3.78E-02
141GO:0006508: proteolysis3.86E-02
142GO:0048316: seed development3.86E-02
143GO:0009734: auxin-activated signaling pathway4.03E-02
144GO:0009620: response to fungus4.04E-02
145GO:0009624: response to nematode4.31E-02
146GO:0009742: brassinosteroid mediated signaling pathway4.49E-02
147GO:0009735: response to cytokinin4.63E-02
RankGO TermAdjusted P value
1GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
2GO:0004107: chorismate synthase activity0.00E+00
3GO:0047631: ADP-ribose diphosphatase activity2.12E-05
4GO:0000210: NAD+ diphosphatase activity3.20E-05
5GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity1.23E-04
6GO:0080042: ADP-glucose pyrophosphohydrolase activity1.23E-04
7GO:0004048: anthranilate phosphoribosyltransferase activity1.23E-04
8GO:0004568: chitinase activity1.75E-04
9GO:0005516: calmodulin binding2.21E-04
10GO:0005388: calcium-transporting ATPase activity2.71E-04
11GO:0004338: glucan exo-1,3-beta-glucosidase activity2.86E-04
12GO:0004776: succinate-CoA ligase (GDP-forming) activity2.86E-04
13GO:0004634: phosphopyruvate hydratase activity2.86E-04
14GO:0045543: gibberellin 2-beta-dioxygenase activity2.86E-04
15GO:0080041: ADP-ribose pyrophosphohydrolase activity2.86E-04
16GO:0017110: nucleoside-diphosphatase activity2.86E-04
17GO:0004775: succinate-CoA ligase (ADP-forming) activity2.86E-04
18GO:0048531: beta-1,3-galactosyltransferase activity2.86E-04
19GO:0005524: ATP binding3.14E-04
20GO:0008061: chitin binding3.45E-04
21GO:0004190: aspartic-type endopeptidase activity3.45E-04
22GO:0051287: NAD binding4.26E-04
23GO:0004148: dihydrolipoyl dehydrogenase activity4.72E-04
24GO:0004298: threonine-type endopeptidase activity5.17E-04
25GO:0003756: protein disulfide isomerase activity6.66E-04
26GO:0004108: citrate (Si)-synthase activity6.76E-04
27GO:0017089: glycolipid transporter activity6.76E-04
28GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity6.76E-04
29GO:0004449: isocitrate dehydrogenase (NAD+) activity6.76E-04
30GO:0035529: NADH pyrophosphatase activity6.76E-04
31GO:0051861: glycolipid binding8.97E-04
32GO:0005507: copper ion binding9.58E-04
33GO:0005471: ATP:ADP antiporter activity1.13E-03
34GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity1.39E-03
35GO:0016615: malate dehydrogenase activity1.39E-03
36GO:0030976: thiamine pyrophosphate binding1.39E-03
37GO:0004012: phospholipid-translocating ATPase activity1.66E-03
38GO:0030060: L-malate dehydrogenase activity1.66E-03
39GO:0016831: carboxy-lyase activity1.95E-03
40GO:0050897: cobalt ion binding2.17E-03
41GO:0004714: transmembrane receptor protein tyrosine kinase activity2.26E-03
42GO:0004564: beta-fructofuranosidase activity2.26E-03
43GO:0015288: porin activity2.26E-03
44GO:0000287: magnesium ion binding2.54E-03
45GO:0008308: voltage-gated anion channel activity2.58E-03
46GO:0004674: protein serine/threonine kinase activity3.19E-03
47GO:0015112: nitrate transmembrane transporter activity3.26E-03
48GO:0004575: sucrose alpha-glucosidase activity3.26E-03
49GO:0004672: protein kinase activity3.47E-03
50GO:0008559: xenobiotic-transporting ATPase activity4.00E-03
51GO:0005262: calcium channel activity4.79E-03
52GO:0015114: phosphate ion transmembrane transporter activity4.79E-03
53GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism4.79E-03
54GO:0042973: glucan endo-1,3-beta-D-glucosidase activity5.20E-03
55GO:0003712: transcription cofactor activity5.63E-03
56GO:0030552: cAMP binding5.63E-03
57GO:0030553: cGMP binding5.63E-03
58GO:0005216: ion channel activity6.98E-03
59GO:0033612: receptor serine/threonine kinase binding7.45E-03
60GO:0008810: cellulase activity8.43E-03
61GO:0008565: protein transporter activity8.73E-03
62GO:0005249: voltage-gated potassium channel activity9.99E-03
63GO:0030551: cyclic nucleotide binding9.99E-03
64GO:0008536: Ran GTPase binding1.05E-02
65GO:0010181: FMN binding1.11E-02
66GO:0030247: polysaccharide binding1.78E-02
67GO:0004806: triglyceride lipase activity1.78E-02
68GO:0016301: kinase activity1.80E-02
69GO:0050660: flavin adenine dinucleotide binding1.81E-02
70GO:0008233: peptidase activity1.91E-02
71GO:0015238: drug transmembrane transporter activity1.98E-02
72GO:0004222: metalloendopeptidase activity2.05E-02
73GO:0030145: manganese ion binding2.12E-02
74GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.12E-02
75GO:0003746: translation elongation factor activity2.26E-02
76GO:0000987: core promoter proximal region sequence-specific DNA binding2.34E-02
77GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.51E-02
78GO:0005509: calcium ion binding2.55E-02
79GO:0004364: glutathione transferase activity2.63E-02
80GO:0051537: 2 iron, 2 sulfur cluster binding2.87E-02
81GO:0009055: electron carrier activity3.08E-02
82GO:0016298: lipase activity3.44E-02
83GO:0031625: ubiquitin protein ligase binding3.60E-02
84GO:0045735: nutrient reservoir activity3.78E-02
85GO:0080043: quercetin 3-O-glucosyltransferase activity4.04E-02
86GO:0080044: quercetin 7-O-glucosyltransferase activity4.04E-02
87GO:0016887: ATPase activity4.43E-02
88GO:0016757: transferase activity, transferring glycosyl groups4.47E-02
89GO:0020037: heme binding4.94E-02
90GO:0016758: transferase activity, transferring hexosyl groups4.95E-02
RankGO TermAdjusted P value
1GO:0000327: lytic vacuole within protein storage vacuole0.00E+00
2GO:0005886: plasma membrane7.08E-07
3GO:0005740: mitochondrial envelope3.36E-06
4GO:0005741: mitochondrial outer membrane2.16E-05
5GO:0005618: cell wall3.45E-05
6GO:0019773: proteasome core complex, alpha-subunit complex9.94E-05
7GO:0005774: vacuolar membrane1.07E-04
8GO:0048046: apoplast1.25E-04
9GO:0005783: endoplasmic reticulum2.44E-04
10GO:0005901: caveola2.86E-04
11GO:0000015: phosphopyruvate hydratase complex2.86E-04
12GO:0005758: mitochondrial intermembrane space4.26E-04
13GO:0005839: proteasome core complex5.17E-04
14GO:0030660: Golgi-associated vesicle membrane8.97E-04
15GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane8.97E-04
16GO:0005773: vacuole1.21E-03
17GO:0005788: endoplasmic reticulum lumen1.53E-03
18GO:0009507: chloroplast1.71E-03
19GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane2.26E-03
20GO:0000326: protein storage vacuole2.58E-03
21GO:0046930: pore complex2.58E-03
22GO:0005765: lysosomal membrane4.00E-03
23GO:0000502: proteasome complex4.11E-03
24GO:0031012: extracellular matrix4.79E-03
25GO:0031225: anchored component of membrane4.88E-03
26GO:0070469: respiratory chain6.98E-03
27GO:0005887: integral component of plasma membrane8.25E-03
28GO:0005759: mitochondrial matrix9.17E-03
29GO:0005829: cytosol9.26E-03
30GO:0005739: mitochondrion1.33E-02
31GO:0000151: ubiquitin ligase complex1.91E-02
32GO:0022625: cytosolic large ribosomal subunit2.04E-02
33GO:0000325: plant-type vacuole2.12E-02
34GO:0005743: mitochondrial inner membrane2.67E-02
35GO:0090406: pollen tube2.71E-02
36GO:0016021: integral component of membrane2.79E-02
37GO:0005635: nuclear envelope3.52E-02
38GO:0009536: plastid3.64E-02
39GO:0009505: plant-type cell wall3.73E-02
40GO:0005747: mitochondrial respiratory chain complex I3.86E-02
41GO:0009706: chloroplast inner membrane4.31E-02
42GO:0022626: cytosolic ribosome4.84E-02
Gene type



Gene DE type