co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G02180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046677: response to antibiotic	0.00E+00
2	GO:0015810: aspartate transport	0.00E+00
3	GO:0090279: regulation of calcium ion import	0.00E+00
4	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
5	GO:0071474: cellular hyperosmotic response	0.00E+00
6	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
7	GO:0070584: mitochondrion morphogenesis	0.00E+00
8	GO:0015827: tryptophan transport	0.00E+00
9	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
10	GO:0015970: guanosine tetraphosphate biosynthetic process	0.00E+00
11	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
12	GO:0009877: nodulation	0.00E+00
13	GO:0009768: photosynthesis, light harvesting in photosystem I	1.63E-11
14	GO:0015979: photosynthesis	5.73E-10
15	GO:0009645: response to low light intensity stimulus	1.70E-09
16	GO:0018298: protein-chromophore linkage	2.31E-09
17	GO:0010114: response to red light	1.17E-08
18	GO:0015995: chlorophyll biosynthetic process	9.70E-08
19	GO:0010218: response to far red light	1.70E-07
20	GO:0009637: response to blue light	2.49E-07
21	GO:0007623: circadian rhythm	5.31E-07
22	GO:0009765: photosynthesis, light harvesting	1.03E-05
23	GO:0009644: response to high light intensity	1.82E-05
24	GO:0071470: cellular response to osmotic stress	3.64E-05
25	GO:0009769: photosynthesis, light harvesting in photosystem II	4.92E-05
26	GO:0009416: response to light stimulus	5.40E-05
27	GO:0055114: oxidation-reduction process	6.99E-05
28	GO:0015812: gamma-aminobutyric acid transport	1.08E-04
29	GO:0010362: negative regulation of anion channel activity by blue light	1.08E-04
30	GO:0000160: phosphorelay signal transduction system	1.42E-04
31	GO:0051170: nuclear import	2.52E-04
32	GO:0071497: cellular response to freezing	2.52E-04
33	GO:0050992: dimethylallyl diphosphate biosynthetic process	2.52E-04
34	GO:0010155: regulation of proton transport	2.52E-04
35	GO:0051262: protein tetramerization	2.52E-04
36	GO:0090153: regulation of sphingolipid biosynthetic process	4.19E-04
37	GO:1902448: positive regulation of shade avoidance	4.19E-04
38	GO:0003333: amino acid transmembrane transport	4.33E-04
39	GO:0048511: rhythmic process	4.33E-04
40	GO:0009269: response to desiccation	4.33E-04
41	GO:0080167: response to karrikin	4.39E-04
42	GO:0010017: red or far-red light signaling pathway	4.74E-04
43	GO:1901000: regulation of response to salt stress	6.01E-04
44	GO:0044211: CTP salvage	6.01E-04
45	GO:0030100: regulation of endocytosis	6.01E-04
46	GO:0044206: UMP salvage	7.98E-04
47	GO:0015846: polyamine transport	7.98E-04
48	GO:0030104: water homeostasis	7.98E-04
49	GO:1901141: regulation of lignin biosynthetic process	7.98E-04
50	GO:2000306: positive regulation of photomorphogenesis	7.98E-04
51	GO:0010600: regulation of auxin biosynthetic process	7.98E-04
52	GO:0006351: transcription, DNA-templated	8.28E-04
53	GO:0043097: pyrimidine nucleoside salvage	1.01E-03
54	GO:0009904: chloroplast accumulation movement	1.01E-03
55	GO:0006461: protein complex assembly	1.01E-03
56	GO:0016123: xanthophyll biosynthetic process	1.01E-03
57	GO:0006206: pyrimidine nucleobase metabolic process	1.23E-03
58	GO:0006655: phosphatidylglycerol biosynthetic process	1.23E-03
59	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.23E-03
60	GO:0045962: positive regulation of development, heterochronic	1.23E-03
61	GO:0009903: chloroplast avoidance movement	1.47E-03
62	GO:0010189: vitamin E biosynthetic process	1.47E-03
63	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.47E-03
64	GO:0006355: regulation of transcription, DNA-templated	1.65E-03
65	GO:0010161: red light signaling pathway	1.73E-03
66	GO:0080186: developmental vegetative growth	1.73E-03
67	GO:0009704: de-etiolation	2.00E-03
68	GO:0050821: protein stabilization	2.00E-03
69	GO:0010928: regulation of auxin mediated signaling pathway	2.00E-03
70	GO:0010099: regulation of photomorphogenesis	2.28E-03
71	GO:0009827: plant-type cell wall modification	2.28E-03
72	GO:0007186: G-protein coupled receptor signaling pathway	2.28E-03
73	GO:0009723: response to ethylene	2.48E-03
74	GO:0009640: photomorphogenesis	2.56E-03
75	GO:0090333: regulation of stomatal closure	2.57E-03
76	GO:0042761: very long-chain fatty acid biosynthetic process	2.88E-03
77	GO:0008356: asymmetric cell division	2.88E-03
78	GO:0009638: phototropism	2.88E-03
79	GO:0048354: mucilage biosynthetic process involved in seed coat development	2.88E-03
80	GO:0044550: secondary metabolite biosynthetic process	3.01E-03
81	GO:0009688: abscisic acid biosynthetic process	3.20E-03
82	GO:0009641: shade avoidance	3.20E-03
83	GO:0030148: sphingolipid biosynthetic process	3.53E-03
84	GO:0046856: phosphatidylinositol dephosphorylation	3.53E-03
85	GO:0016024: CDP-diacylglycerol biosynthetic process	3.87E-03
86	GO:0009785: blue light signaling pathway	4.23E-03
87	GO:0018107: peptidyl-threonine phosphorylation	4.23E-03
88	GO:0009718: anthocyanin-containing compound biosynthetic process	4.23E-03
89	GO:0009767: photosynthetic electron transport chain	4.23E-03
90	GO:0006629: lipid metabolic process	4.44E-03
91	GO:0009887: animal organ morphogenesis	4.59E-03
92	GO:0009266: response to temperature stimulus	4.59E-03
93	GO:0009624: response to nematode	4.86E-03
94	GO:0090351: seedling development	4.96E-03
95	GO:0006636: unsaturated fatty acid biosynthetic process	5.35E-03
96	GO:0006874: cellular calcium ion homeostasis	6.15E-03
97	GO:0071215: cellular response to abscisic acid stimulus	7.42E-03
98	GO:0070417: cellular response to cold	8.32E-03
99	GO:0009409: response to cold	8.68E-03
100	GO:0010228: vegetative to reproductive phase transition of meristem	8.79E-03
101	GO:0010182: sugar mediated signaling pathway	9.26E-03
102	GO:0006814: sodium ion transport	9.74E-03
103	GO:0035556: intracellular signal transduction	9.85E-03
104	GO:0008654: phospholipid biosynthetic process	1.02E-02
105	GO:0009651: response to salt stress	1.06E-02
106	GO:0000302: response to reactive oxygen species	1.07E-02
107	GO:1901657: glycosyl compound metabolic process	1.18E-02
108	GO:0009658: chloroplast organization	1.30E-02
109	GO:0016126: sterol biosynthetic process	1.39E-02
110	GO:0006970: response to osmotic stress	1.40E-02
111	GO:0048573: photoperiodism, flowering	1.56E-02
112	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.67E-02
113	GO:0006811: ion transport	1.80E-02
114	GO:0009631: cold acclimation	1.86E-02
115	GO:0010119: regulation of stomatal movement	1.86E-02
116	GO:0045892: negative regulation of transcription, DNA-templated	1.97E-02
117	GO:0034599: cellular response to oxidative stress	2.05E-02
118	GO:0042542: response to hydrogen peroxide	2.31E-02
119	GO:0051707: response to other organism	2.38E-02
120	GO:0009965: leaf morphogenesis	2.59E-02
121	GO:0006812: cation transport	2.80E-02
122	GO:0009585: red, far-red light phototransduction	2.94E-02
123	GO:0006857: oligopeptide transport	3.09E-02
124	GO:0009909: regulation of flower development	3.17E-02
125	GO:0043086: negative regulation of catalytic activity	3.32E-02
126	GO:0005975: carbohydrate metabolic process	3.77E-02
127	GO:0018105: peptidyl-serine phosphorylation	3.86E-02
128	GO:0009058: biosynthetic process	4.61E-02
129	GO:0009845: seed germination	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0004567: beta-mannosidase activity	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0080082: esculin beta-glucosidase activity	0.00E+00
4	GO:0051745: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity	0.00E+00
5	GO:0015038: glutathione disulfide oxidoreductase activity	0.00E+00
6	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
7	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
8	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
9	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
10	GO:0009540: zeaxanthin epoxidase [overall] activity	0.00E+00
11	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
12	GO:0031409: pigment binding	1.13E-09
13	GO:0016168: chlorophyll binding	7.18E-08
14	GO:0046872: metal ion binding	4.82E-05
15	GO:0052631: sphingolipid delta-8 desaturase activity	1.08E-04
16	GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity	1.08E-04
17	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	1.08E-04
18	GO:0008158: hedgehog receptor activity	1.08E-04
19	GO:0005227: calcium activated cation channel activity	1.08E-04
20	GO:0080079: cellobiose glucosidase activity	1.08E-04
21	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	1.08E-04
22	GO:0016630: protochlorophyllide reductase activity	2.52E-04
23	GO:0008728: GTP diphosphokinase activity	2.52E-04
24	GO:0015180: L-alanine transmembrane transporter activity	2.52E-04
25	GO:0015172: acidic amino acid transmembrane transporter activity	2.52E-04
26	GO:0080045: quercetin 3'-O-glucosyltransferase activity	2.52E-04
27	GO:0015293: symporter activity	3.06E-04
28	GO:0010277: chlorophyllide a oxygenase [overall] activity	4.19E-04
29	GO:0015171: amino acid transmembrane transporter activity	4.42E-04
30	GO:0015181: arginine transmembrane transporter activity	6.01E-04
31	GO:0015203: polyamine transmembrane transporter activity	6.01E-04
32	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.01E-04
33	GO:0009882: blue light photoreceptor activity	6.01E-04
34	GO:0015189: L-lysine transmembrane transporter activity	6.01E-04
35	GO:0015175: neutral amino acid transmembrane transporter activity	6.01E-04
36	GO:0004506: squalene monooxygenase activity	7.98E-04
37	GO:0004930: G-protein coupled receptor activity	7.98E-04
38	GO:0004845: uracil phosphoribosyltransferase activity	7.98E-04
39	GO:0005313: L-glutamate transmembrane transporter activity	7.98E-04
40	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	8.31E-04
41	GO:0000156: phosphorelay response regulator activity	9.72E-04
42	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.01E-03
43	GO:0051538: 3 iron, 4 sulfur cluster binding	1.01E-03
44	GO:0015297: antiporter activity	1.13E-03
45	GO:0004462: lactoylglutathione lyase activity	1.23E-03
46	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.23E-03
47	GO:0004605: phosphatidate cytidylyltransferase activity	1.23E-03
48	GO:0005261: cation channel activity	1.47E-03
49	GO:0004849: uridine kinase activity	1.47E-03
50	GO:0004602: glutathione peroxidase activity	1.47E-03
51	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	2.28E-03
52	GO:0000989: transcription factor activity, transcription factor binding	2.57E-03
53	GO:0071949: FAD binding	2.57E-03
54	GO:0051537: 2 iron, 2 sulfur cluster binding	2.76E-03
55	GO:0015174: basic amino acid transmembrane transporter activity	2.88E-03
56	GO:0003677: DNA binding	2.97E-03
57	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	3.20E-03
58	GO:0047372: acylglycerol lipase activity	3.53E-03
59	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	3.87E-03
60	GO:0004022: alcohol dehydrogenase (NAD) activity	4.23E-03
61	GO:0005315: inorganic phosphate transmembrane transporter activity	4.23E-03
62	GO:0000155: phosphorelay sensor kinase activity	4.23E-03
63	GO:0004565: beta-galactosidase activity	4.23E-03
64	GO:0016787: hydrolase activity	4.86E-03
65	GO:0005217: intracellular ligand-gated ion channel activity	4.96E-03
66	GO:0003712: transcription cofactor activity	4.96E-03
67	GO:0004970: ionotropic glutamate receptor activity	4.96E-03
68	GO:0004190: aspartic-type endopeptidase activity	4.96E-03
69	GO:0005506: iron ion binding	5.36E-03
70	GO:0005216: ion channel activity	6.15E-03
71	GO:0004707: MAP kinase activity	6.56E-03
72	GO:0008514: organic anion transmembrane transporter activity	7.87E-03
73	GO:0003700: transcription factor activity, sequence-specific DNA binding	8.81E-03
74	GO:0005515: protein binding	9.40E-03
75	GO:0010181: FMN binding	9.74E-03
76	GO:0004672: protein kinase activity	9.82E-03
77	GO:0102483: scopolin beta-glucosidase activity	1.56E-02
78	GO:0004497: monooxygenase activity	1.62E-02
79	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.09E-02
80	GO:0008422: beta-glucosidase activity	2.12E-02
81	GO:0042393: histone binding	2.18E-02
82	GO:0016298: lipase activity	3.02E-02
83	GO:0016491: oxidoreductase activity	3.17E-02
84	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.55E-02
85	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.55E-02
86	GO:0016874: ligase activity	3.63E-02
87	GO:0015035: protein disulfide oxidoreductase activity	3.86E-02
88	GO:0020037: heme binding	3.96E-02
89	GO:0016829: lyase activity	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0009535: chloroplast thylakoid membrane	5.71E-12
2	GO:0009522: photosystem I	1.68E-10
3	GO:0009941: chloroplast envelope	9.05E-10
4	GO:0010287: plastoglobule	4.85E-09
5	GO:0009534: chloroplast thylakoid	5.30E-08
6	GO:0030076: light-harvesting complex	9.65E-08
7	GO:0009579: thylakoid	7.65E-07
8	GO:0009523: photosystem II	1.14E-06
9	GO:0009507: chloroplast	6.61E-06
10	GO:0009517: PSII associated light-harvesting complex II	1.03E-05
11	GO:0016021: integral component of membrane	1.25E-04
12	GO:0016020: membrane	6.92E-04
13	GO:0030660: Golgi-associated vesicle membrane	7.98E-04
14	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	7.98E-04
15	GO:0009898: cytoplasmic side of plasma membrane	7.98E-04
16	GO:0005798: Golgi-associated vesicle	1.23E-03
17	GO:0009986: cell surface	1.73E-03
18	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	2.00E-03
19	GO:0009538: photosystem I reaction center	2.00E-03
20	GO:0031966: mitochondrial membrane	3.20E-03
21	GO:0005765: lysosomal membrane	3.53E-03
22	GO:0009706: chloroplast inner membrane	4.86E-03
23	GO:0005769: early endosome	5.35E-03
24	GO:0042651: thylakoid membrane	6.15E-03
25	GO:0009570: chloroplast stroma	1.18E-02
26	GO:0031969: chloroplast membrane	1.62E-02
27	GO:0009707: chloroplast outer membrane	1.68E-02
28	GO:0005887: integral component of plasma membrane	3.24E-02
29	GO:0016607: nuclear speck	3.39E-02
30	GO:0010008: endosome membrane	3.39E-02
31	GO:0005783: endoplasmic reticulum	3.67E-02
32	GO:0005789: endoplasmic reticulum membrane	3.80E-02
33	GO:0005623: cell	4.52E-02