co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G02120

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
2	GO:0006066: alcohol metabolic process	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0042821: pyridoxal biosynthetic process	0.00E+00
5	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
6	GO:0042820: vitamin B6 catabolic process	0.00E+00
7	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
8	GO:0009773: photosynthetic electron transport in photosystem I	4.78E-11
9	GO:0015979: photosynthesis	1.07E-08
10	GO:0010027: thylakoid membrane organization	1.80E-06
11	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.24E-06
12	GO:0042335: cuticle development	1.05E-05
13	GO:0000038: very long-chain fatty acid metabolic process	2.65E-05
14	GO:0018298: protein-chromophore linkage	6.81E-05
15	GO:0010025: wax biosynthetic process	7.16E-05
16	GO:0006633: fatty acid biosynthetic process	1.56E-04
17	GO:0010196: nonphotochemical quenching	1.99E-04
18	GO:0006810: transport	2.25E-04
19	GO:0033481: galacturonate biosynthetic process	2.65E-04
20	GO:0042371: vitamin K biosynthetic process	2.65E-04
21	GO:1902458: positive regulation of stomatal opening	2.65E-04
22	GO:0071596: ubiquitin-dependent protein catabolic process via the N-end rule pathway	2.65E-04
23	GO:0071588: hydrogen peroxide mediated signaling pathway	2.65E-04
24	GO:0009443: pyridoxal 5'-phosphate salvage	2.65E-04
25	GO:0046520: sphingoid biosynthetic process	2.65E-04
26	GO:0071277: cellular response to calcium ion	2.65E-04
27	GO:0010205: photoinhibition	4.44E-04
28	GO:0097054: L-glutamate biosynthetic process	5.83E-04
29	GO:1903426: regulation of reactive oxygen species biosynthetic process	5.83E-04
30	GO:0010024: phytochromobilin biosynthetic process	5.83E-04
31	GO:0010115: regulation of abscisic acid biosynthetic process	5.83E-04
32	GO:0055114: oxidation-reduction process	5.95E-04
33	GO:0010143: cutin biosynthetic process	8.73E-04
34	GO:0010207: photosystem II assembly	8.73E-04
35	GO:0009416: response to light stimulus	8.99E-04
36	GO:0006696: ergosterol biosynthetic process	9.47E-04
37	GO:0015714: phosphoenolpyruvate transport	9.47E-04
38	GO:0006788: heme oxidation	9.47E-04
39	GO:0006954: inflammatory response	9.47E-04
40	GO:0090391: granum assembly	9.47E-04
41	GO:0006636: unsaturated fatty acid biosynthetic process	1.08E-03
42	GO:0009768: photosynthesis, light harvesting in photosystem I	1.32E-03
43	GO:0006168: adenine salvage	1.35E-03
44	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.35E-03
45	GO:0006166: purine ribonucleoside salvage	1.35E-03
46	GO:0071484: cellular response to light intensity	1.35E-03
47	GO:0080170: hydrogen peroxide transmembrane transport	1.35E-03
48	GO:0006537: glutamate biosynthetic process	1.35E-03
49	GO:0009800: cinnamic acid biosynthetic process	1.35E-03
50	GO:0010037: response to carbon dioxide	1.81E-03
51	GO:0019676: ammonia assimilation cycle	1.81E-03
52	GO:0015976: carbon utilization	1.81E-03
53	GO:0009765: photosynthesis, light harvesting	1.81E-03
54	GO:0045727: positive regulation of translation	1.81E-03
55	GO:0015994: chlorophyll metabolic process	1.81E-03
56	GO:2000122: negative regulation of stomatal complex development	1.81E-03
57	GO:0031122: cytoplasmic microtubule organization	1.81E-03
58	GO:0015713: phosphoglycerate transport	1.81E-03
59	GO:0009658: chloroplast organization	2.15E-03
60	GO:0006564: L-serine biosynthetic process	2.31E-03
61	GO:0045038: protein import into chloroplast thylakoid membrane	2.31E-03
62	GO:0031365: N-terminal protein amino acid modification	2.31E-03
63	GO:0006461: protein complex assembly	2.31E-03
64	GO:0044209: AMP salvage	2.31E-03
65	GO:0080110: sporopollenin biosynthetic process	2.31E-03
66	GO:0010182: sugar mediated signaling pathway	2.36E-03
67	GO:0006561: proline biosynthetic process	2.85E-03
68	GO:0048759: xylem vessel member cell differentiation	2.85E-03
69	GO:0010405: arabinogalactan protein metabolic process	2.85E-03
70	GO:0009913: epidermal cell differentiation	2.85E-03
71	GO:0006559: L-phenylalanine catabolic process	2.85E-03
72	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.85E-03
73	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.85E-03
74	GO:0006596: polyamine biosynthetic process	2.85E-03
75	GO:0000741: karyogamy	2.85E-03
76	GO:0035435: phosphate ion transmembrane transport	2.85E-03
77	GO:0080167: response to karrikin	2.98E-03
78	GO:0010019: chloroplast-nucleus signaling pathway	3.43E-03
79	GO:0042372: phylloquinone biosynthetic process	3.43E-03
80	GO:0071555: cell wall organization	3.62E-03
81	GO:0006400: tRNA modification	4.04E-03
82	GO:0009395: phospholipid catabolic process	4.04E-03
83	GO:0009772: photosynthetic electron transport in photosystem II	4.04E-03
84	GO:0030497: fatty acid elongation	4.04E-03
85	GO:1900057: positive regulation of leaf senescence	4.04E-03
86	GO:0009645: response to low light intensity stimulus	4.04E-03
87	GO:0050829: defense response to Gram-negative bacterium	4.04E-03
88	GO:0010444: guard mother cell differentiation	4.04E-03
89	GO:0006869: lipid transport	4.51E-03
90	GO:0009704: de-etiolation	4.69E-03
91	GO:2000070: regulation of response to water deprivation	4.69E-03
92	GO:0055075: potassium ion homeostasis	4.69E-03
93	GO:0008610: lipid biosynthetic process	4.69E-03
94	GO:0030091: protein repair	4.69E-03
95	GO:0046620: regulation of organ growth	4.69E-03
96	GO:0006605: protein targeting	4.69E-03
97	GO:0010411: xyloglucan metabolic process	4.93E-03
98	GO:0032544: plastid translation	5.37E-03
99	GO:0015996: chlorophyll catabolic process	5.37E-03
100	GO:0007186: G-protein coupled receptor signaling pathway	5.37E-03
101	GO:0009657: plastid organization	5.37E-03
102	GO:0000373: Group II intron splicing	6.09E-03
103	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.09E-03
104	GO:0010206: photosystem II repair	6.09E-03
105	GO:0090333: regulation of stomatal closure	6.09E-03
106	GO:0009409: response to cold	6.56E-03
107	GO:0009638: phototropism	6.83E-03
108	GO:0009688: abscisic acid biosynthetic process	7.61E-03
109	GO:0019538: protein metabolic process	7.61E-03
110	GO:0009750: response to fructose	8.42E-03
111	GO:0018119: peptidyl-cysteine S-nitrosylation	8.42E-03
112	GO:0009073: aromatic amino acid family biosynthetic process	8.42E-03
113	GO:0009926: auxin polar transport	8.94E-03
114	GO:0009744: response to sucrose	8.94E-03
115	GO:0015706: nitrate transport	9.26E-03
116	GO:0016024: CDP-diacylglycerol biosynthetic process	9.26E-03
117	GO:0045037: protein import into chloroplast stroma	9.26E-03
118	GO:0042546: cell wall biogenesis	9.30E-03
119	GO:0006006: glucose metabolic process	1.01E-02
120	GO:0009725: response to hormone	1.01E-02
121	GO:0010628: positive regulation of gene expression	1.01E-02
122	GO:0042254: ribosome biogenesis	1.05E-02
123	GO:0019253: reductive pentose-phosphate cycle	1.10E-02
124	GO:0009735: response to cytokinin	1.12E-02
125	GO:0071732: cellular response to nitric oxide	1.20E-02
126	GO:0009225: nucleotide-sugar metabolic process	1.20E-02
127	GO:0010167: response to nitrate	1.20E-02
128	GO:0006833: water transport	1.29E-02
129	GO:0006857: oligopeptide transport	1.29E-02
130	GO:0005992: trehalose biosynthetic process	1.39E-02
131	GO:0006487: protein N-linked glycosylation	1.39E-02
132	GO:0000027: ribosomal large subunit assembly	1.39E-02
133	GO:0006096: glycolytic process	1.43E-02
134	GO:0007017: microtubule-based process	1.49E-02
135	GO:0016998: cell wall macromolecule catabolic process	1.59E-02
136	GO:0061077: chaperone-mediated protein folding	1.59E-02
137	GO:0031408: oxylipin biosynthetic process	1.59E-02
138	GO:0030245: cellulose catabolic process	1.70E-02
139	GO:0016226: iron-sulfur cluster assembly	1.70E-02
140	GO:0071369: cellular response to ethylene stimulus	1.81E-02
141	GO:0055085: transmembrane transport	1.84E-02
142	GO:0009306: protein secretion	1.92E-02
143	GO:0010584: pollen exine formation	1.92E-02
144	GO:0042127: regulation of cell proliferation	1.92E-02
145	GO:0032259: methylation	2.09E-02
146	GO:0034220: ion transmembrane transport	2.15E-02
147	GO:0010087: phloem or xylem histogenesis	2.15E-02
148	GO:0010197: polar nucleus fusion	2.26E-02
149	GO:0015986: ATP synthesis coupled proton transport	2.38E-02
150	GO:0005975: carbohydrate metabolic process	2.41E-02
151	GO:0042744: hydrogen peroxide catabolic process	2.46E-02
152	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.63E-02
153	GO:0000302: response to reactive oxygen species	2.63E-02
154	GO:1901657: glycosyl compound metabolic process	2.88E-02
155	GO:0071281: cellular response to iron ion	2.88E-02
156	GO:0016126: sterol biosynthetic process	3.42E-02
157	GO:0042128: nitrate assimilation	3.70E-02
158	GO:0006979: response to oxidative stress	3.70E-02
159	GO:0000160: phosphorelay signal transduction system	4.28E-02
160	GO:0010218: response to far red light	4.43E-02
161	GO:0009826: unidimensional cell growth	4.43E-02
162	GO:0009407: toxin catabolic process	4.43E-02
163	GO:0010119: regulation of stomatal movement	4.58E-02
164	GO:0009631: cold acclimation	4.58E-02
165	GO:0009637: response to blue light	4.88E-02
166	GO:0009853: photorespiration	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:1990534: thermospermine oxidase activity	0.00E+00
4	GO:0051738: xanthophyll binding	0.00E+00
5	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
6	GO:0046577: long-chain-alcohol oxidase activity	0.00E+00
7	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
8	GO:0010487: thermospermine synthase activity	0.00E+00
9	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
10	GO:0016168: chlorophyll binding	2.09E-06
11	GO:0043495: protein anchor	4.76E-05
12	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	7.16E-05
13	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	7.16E-05
14	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	7.16E-05
15	GO:0005528: FK506 binding	8.41E-05
16	GO:0022891: substrate-specific transmembrane transporter activity	1.47E-04
17	GO:0019899: enzyme binding	1.99E-04
18	GO:0016768: spermine synthase activity	2.65E-04
19	GO:0016041: glutamate synthase (ferredoxin) activity	2.65E-04
20	GO:0004328: formamidase activity	2.65E-04
21	GO:0000170: sphingosine hydroxylase activity	2.65E-04
22	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.65E-04
23	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.65E-04
24	GO:0008568: microtubule-severing ATPase activity	2.65E-04
25	GO:0045485: omega-6 fatty acid desaturase activity	2.65E-04
26	GO:0047746: chlorophyllase activity	5.83E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	5.83E-04
28	GO:0018708: thiol S-methyltransferase activity	5.83E-04
29	GO:0042284: sphingolipid delta-4 desaturase activity	5.83E-04
30	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.83E-04
31	GO:0008967: phosphoglycolate phosphatase activity	5.83E-04
32	GO:0016491: oxidoreductase activity	5.99E-04
33	GO:0004565: beta-galactosidase activity	7.76E-04
34	GO:0070402: NADPH binding	9.47E-04
35	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	9.47E-04
36	GO:0050734: hydroxycinnamoyltransferase activity	9.47E-04
37	GO:0045548: phenylalanine ammonia-lyase activity	9.47E-04
38	GO:0031409: pigment binding	1.08E-03
39	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.35E-03
40	GO:0001872: (1->3)-beta-D-glucan binding	1.35E-03
41	GO:0003999: adenine phosphoribosyltransferase activity	1.35E-03
42	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.35E-03
43	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.55E-03
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.56E-03
45	GO:0004392: heme oxygenase (decyclizing) activity	1.81E-03
46	GO:0015120: phosphoglycerate transmembrane transporter activity	1.81E-03
47	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.81E-03
48	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.81E-03
49	GO:0052793: pectin acetylesterase activity	1.81E-03
50	GO:0004506: squalene monooxygenase activity	1.81E-03
51	GO:0050378: UDP-glucuronate 4-epimerase activity	1.81E-03
52	GO:0016788: hydrolase activity, acting on ester bonds	2.21E-03
53	GO:0051538: 3 iron, 4 sulfur cluster binding	2.31E-03
54	GO:0009922: fatty acid elongase activity	2.31E-03
55	GO:0050662: coenzyme binding	2.53E-03
56	GO:0016688: L-ascorbate peroxidase activity	2.85E-03
57	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.85E-03
58	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.85E-03
59	GO:0004130: cytochrome-c peroxidase activity	2.85E-03
60	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.85E-03
61	GO:0016208: AMP binding	2.85E-03
62	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.90E-03
63	GO:0016746: transferase activity, transferring acyl groups	3.04E-03
64	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.43E-03
65	GO:0051753: mannan synthase activity	3.43E-03
66	GO:0052689: carboxylic ester hydrolase activity	3.47E-03
67	GO:0019843: rRNA binding	3.90E-03
68	GO:0008235: metalloexopeptidase activity	4.04E-03
69	GO:0030674: protein binding, bridging	4.69E-03
70	GO:0004033: aldo-keto reductase (NADP) activity	4.69E-03
71	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.93E-03
72	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.37E-03
73	GO:0015112: nitrate transmembrane transporter activity	6.83E-03
74	GO:0004805: trehalose-phosphatase activity	7.61E-03
75	GO:0042802: identical protein binding	7.98E-03
76	GO:0004177: aminopeptidase activity	8.42E-03
77	GO:0008168: methyltransferase activity	9.77E-03
78	GO:0015293: symporter activity	1.01E-02
79	GO:0004089: carbonate dehydratase activity	1.01E-02
80	GO:0015114: phosphate ion transmembrane transporter activity	1.01E-02
81	GO:0008081: phosphoric diester hydrolase activity	1.01E-02
82	GO:0004022: alcohol dehydrogenase (NAD) activity	1.01E-02
83	GO:0051287: NAD binding	1.08E-02
84	GO:0008131: primary amine oxidase activity	1.10E-02
85	GO:0008266: poly(U) RNA binding	1.10E-02
86	GO:0008146: sulfotransferase activity	1.20E-02
87	GO:0003824: catalytic activity	1.39E-02
88	GO:0051536: iron-sulfur cluster binding	1.39E-02
89	GO:0005215: transporter activity	1.41E-02
90	GO:0043424: protein histidine kinase binding	1.49E-02
91	GO:0004871: signal transducer activity	1.80E-02
92	GO:0008810: cellulase activity	1.81E-02
93	GO:0008514: organic anion transmembrane transporter activity	1.92E-02
94	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.26E-02
95	GO:0009055: electron carrier activity	2.41E-02
96	GO:0004872: receptor activity	2.51E-02
97	GO:0048038: quinone binding	2.63E-02
98	GO:0004518: nuclease activity	2.76E-02
99	GO:0015297: antiporter activity	2.85E-02
100	GO:0000156: phosphorelay response regulator activity	2.88E-02
101	GO:0016791: phosphatase activity	3.02E-02
102	GO:0005200: structural constituent of cytoskeleton	3.15E-02
103	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.15E-02
104	GO:0016597: amino acid binding	3.28E-02
105	GO:0008289: lipid binding	3.33E-02
106	GO:0015250: water channel activity	3.42E-02
107	GO:0008375: acetylglucosaminyltransferase activity	3.70E-02
108	GO:0102483: scopolin beta-glucosidase activity	3.84E-02
109	GO:0030247: polysaccharide binding	3.84E-02
110	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.13E-02
111	GO:0015238: drug transmembrane transporter activity	4.28E-02
112	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.43E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009507: chloroplast	5.40E-20
3	GO:0009535: chloroplast thylakoid membrane	2.25E-18
4	GO:0009579: thylakoid	6.87E-11
5	GO:0009941: chloroplast envelope	3.92E-10
6	GO:0009543: chloroplast thylakoid lumen	1.14E-09
7	GO:0009534: chloroplast thylakoid	1.18E-08
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.50E-07
9	GO:0009570: chloroplast stroma	1.16E-06
10	GO:0030095: chloroplast photosystem II	1.24E-06
11	GO:0048046: apoplast	4.70E-06
12	GO:0031977: thylakoid lumen	1.05E-05
13	GO:0009523: photosystem II	1.68E-05
14	GO:0016021: integral component of membrane	5.68E-05
15	GO:0042651: thylakoid membrane	9.78E-05
16	GO:0009515: granal stacked thylakoid	2.65E-04
17	GO:0009782: photosystem I antenna complex	2.65E-04
18	GO:0046658: anchored component of plasma membrane	3.25E-04
19	GO:0010287: plastoglobule	6.29E-04
20	GO:0009528: plastid inner membrane	9.47E-04
21	GO:0030076: light-harvesting complex	9.75E-04
22	GO:0009654: photosystem II oxygen evolving complex	1.32E-03
23	GO:0015630: microtubule cytoskeleton	1.35E-03
24	GO:0009527: plastid outer membrane	1.81E-03
25	GO:0009517: PSII associated light-harvesting complex II	1.81E-03
26	GO:0019898: extrinsic component of membrane	2.71E-03
27	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.85E-03
28	GO:0031969: chloroplast membrane	2.98E-03
29	GO:0016020: membrane	3.07E-03
30	GO:0010319: stromule	3.73E-03
31	GO:0009533: chloroplast stromal thylakoid	4.04E-03
32	GO:0008180: COP9 signalosome	6.09E-03
33	GO:0031225: anchored component of membrane	7.52E-03
34	GO:0009532: plastid stroma	1.59E-02
35	GO:0009706: chloroplast inner membrane	1.72E-02
36	GO:0005886: plasma membrane	1.74E-02
37	GO:0005618: cell wall	2.08E-02
38	GO:0009522: photosystem I	2.38E-02
39	GO:0005789: endoplasmic reticulum membrane	2.44E-02
40	GO:0032580: Golgi cisterna membrane	3.02E-02
41	GO:0005778: peroxisomal membrane	3.15E-02
42	GO:0030529: intracellular ribonucleoprotein complex	3.42E-02
43	GO:0005840: ribosome	3.92E-02
44	GO:0019005: SCF ubiquitin ligase complex	4.13E-02
45	GO:0009707: chloroplast outer membrane	4.13E-02
46	GO:0000151: ubiquitin ligase complex	4.13E-02
47	GO:0015934: large ribosomal subunit	4.58E-02