co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G01790

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905499: trichome papilla formation	0.00E+00
2	GO:0030397: membrane disassembly	0.00E+00
3	GO:0002184: cytoplasmic translational termination	0.00E+00
4	GO:0090470: shoot organ boundary specification	0.00E+00
5	GO:0061635: regulation of protein complex stability	0.00E+00
6	GO:0007638: mechanosensory behavior	0.00E+00
7	GO:0009773: photosynthetic electron transport in photosystem I	2.68E-09
8	GO:0015979: photosynthesis	4.99E-08
9	GO:0009735: response to cytokinin	1.02E-07
10	GO:0010196: nonphotochemical quenching	2.39E-06
11	GO:0090391: granum assembly	8.31E-06
12	GO:0010027: thylakoid membrane organization	2.42E-05
13	GO:0010025: wax biosynthetic process	4.76E-05
14	GO:0016042: lipid catabolic process	1.42E-04
15	GO:0042335: cuticle development	1.43E-04
16	GO:0010182: sugar mediated signaling pathway	1.59E-04
17	GO:1904966: positive regulation of vitamin E biosynthetic process	2.20E-04
18	GO:0071277: cellular response to calcium ion	2.20E-04
19	GO:1904964: positive regulation of phytol biosynthetic process	2.20E-04
20	GO:0042759: long-chain fatty acid biosynthetic process	2.20E-04
21	GO:0080051: cutin transport	2.20E-04
22	GO:1902458: positive regulation of stomatal opening	2.20E-04
23	GO:0005991: trehalose metabolic process	2.20E-04
24	GO:0071588: hydrogen peroxide mediated signaling pathway	2.20E-04
25	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.20E-04
26	GO:0032544: plastid translation	2.36E-04
27	GO:0015995: chlorophyll biosynthetic process	4.37E-04
28	GO:0006729: tetrahydrobiopterin biosynthetic process	4.90E-04
29	GO:1903426: regulation of reactive oxygen species biosynthetic process	4.90E-04
30	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.90E-04
31	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.90E-04
32	GO:0015908: fatty acid transport	4.90E-04
33	GO:0010115: regulation of abscisic acid biosynthetic process	4.90E-04
34	GO:0006869: lipid transport	6.43E-04
35	GO:0010207: photosystem II assembly	6.76E-04
36	GO:0090506: axillary shoot meristem initiation	7.98E-04
37	GO:0006000: fructose metabolic process	7.98E-04
38	GO:0009062: fatty acid catabolic process	7.98E-04
39	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.14E-03
40	GO:0010371: regulation of gibberellin biosynthetic process	1.14E-03
41	GO:0007231: osmosensory signaling pathway	1.14E-03
42	GO:1901332: negative regulation of lateral root development	1.14E-03
43	GO:0042254: ribosome biogenesis	1.47E-03
44	GO:0034440: lipid oxidation	1.51E-03
45	GO:0010021: amylopectin biosynthetic process	1.51E-03
46	GO:0010222: stem vascular tissue pattern formation	1.51E-03
47	GO:0045727: positive regulation of translation	1.51E-03
48	GO:0015994: chlorophyll metabolic process	1.51E-03
49	GO:0033500: carbohydrate homeostasis	1.51E-03
50	GO:0006564: L-serine biosynthetic process	1.93E-03
51	GO:0010236: plastoquinone biosynthetic process	1.93E-03
52	GO:0045038: protein import into chloroplast thylakoid membrane	1.93E-03
53	GO:0006461: protein complex assembly	1.93E-03
54	GO:0006665: sphingolipid metabolic process	1.93E-03
55	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.08E-03
56	GO:0006561: proline biosynthetic process	2.38E-03
57	GO:0010405: arabinogalactan protein metabolic process	2.38E-03
58	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.38E-03
59	GO:0009913: epidermal cell differentiation	2.38E-03
60	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.38E-03
61	GO:0010189: vitamin E biosynthetic process	2.86E-03
62	GO:0010019: chloroplast-nucleus signaling pathway	2.86E-03
63	GO:0010067: procambium histogenesis	2.86E-03
64	GO:0006400: tRNA modification	3.36E-03
65	GO:0009395: phospholipid catabolic process	3.36E-03
66	GO:0009772: photosynthetic electron transport in photosystem II	3.36E-03
67	GO:0070413: trehalose metabolism in response to stress	3.90E-03
68	GO:0006605: protein targeting	3.90E-03
69	GO:0009704: de-etiolation	3.90E-03
70	GO:2000070: regulation of response to water deprivation	3.90E-03
71	GO:0031540: regulation of anthocyanin biosynthetic process	3.90E-03
72	GO:0008610: lipid biosynthetic process	3.90E-03
73	GO:0030091: protein repair	3.90E-03
74	GO:0018298: protein-chromophore linkage	4.19E-03
75	GO:0010311: lateral root formation	4.40E-03
76	GO:0006002: fructose 6-phosphate metabolic process	4.47E-03
77	GO:0015996: chlorophyll catabolic process	4.47E-03
78	GO:0007186: G-protein coupled receptor signaling pathway	4.47E-03
79	GO:0009657: plastid organization	4.47E-03
80	GO:0090305: nucleic acid phosphodiester bond hydrolysis	5.06E-03
81	GO:0034765: regulation of ion transmembrane transport	5.06E-03
82	GO:0090333: regulation of stomatal closure	5.06E-03
83	GO:0034599: cellular response to oxidative stress	5.54E-03
84	GO:0042761: very long-chain fatty acid biosynthetic process	5.68E-03
85	GO:0009688: abscisic acid biosynthetic process	6.32E-03
86	GO:0009750: response to fructose	6.98E-03
87	GO:0000038: very long-chain fatty acid metabolic process	6.98E-03
88	GO:0006816: calcium ion transport	6.98E-03
89	GO:0008285: negative regulation of cell proliferation	6.98E-03
90	GO:0043085: positive regulation of catalytic activity	6.98E-03
91	GO:0009658: chloroplast organization	7.29E-03
92	GO:0016024: CDP-diacylglycerol biosynthetic process	7.68E-03
93	GO:0045037: protein import into chloroplast stroma	7.68E-03
94	GO:0010229: inflorescence development	8.39E-03
95	GO:0006094: gluconeogenesis	8.39E-03
96	GO:0005986: sucrose biosynthetic process	8.39E-03
97	GO:0010588: cotyledon vascular tissue pattern formation	8.39E-03
98	GO:0019253: reductive pentose-phosphate cycle	9.13E-03
99	GO:0010223: secondary shoot formation	9.13E-03
100	GO:0048467: gynoecium development	9.13E-03
101	GO:0010143: cutin biosynthetic process	9.13E-03
102	GO:0080167: response to karrikin	9.58E-03
103	GO:0070588: calcium ion transmembrane transport	9.90E-03
104	GO:0005985: sucrose metabolic process	9.90E-03
105	GO:0042023: DNA endoreduplication	1.07E-02
106	GO:0019762: glucosinolate catabolic process	1.07E-02
107	GO:0005992: trehalose biosynthetic process	1.15E-02
108	GO:0000027: ribosomal large subunit assembly	1.15E-02
109	GO:0045454: cell redox homeostasis	1.21E-02
110	GO:0009768: photosynthesis, light harvesting in photosystem I	1.23E-02
111	GO:0010073: meristem maintenance	1.23E-02
112	GO:0019953: sexual reproduction	1.23E-02
113	GO:0007017: microtubule-based process	1.23E-02
114	GO:0009695: jasmonic acid biosynthetic process	1.23E-02
115	GO:0009409: response to cold	1.25E-02
116	GO:0016998: cell wall macromolecule catabolic process	1.32E-02
117	GO:0009269: response to desiccation	1.32E-02
118	GO:0031408: oxylipin biosynthetic process	1.32E-02
119	GO:0030245: cellulose catabolic process	1.40E-02
120	GO:0016226: iron-sulfur cluster assembly	1.40E-02
121	GO:0040007: growth	1.49E-02
122	GO:0001944: vasculature development	1.49E-02
123	GO:0010227: floral organ abscission	1.49E-02
124	GO:0009306: protein secretion	1.58E-02
125	GO:0010089: xylem development	1.58E-02
126	GO:0010091: trichome branching	1.58E-02
127	GO:0019722: calcium-mediated signaling	1.58E-02
128	GO:0055114: oxidation-reduction process	1.66E-02
129	GO:0000413: protein peptidyl-prolyl isomerization	1.77E-02
130	GO:0010087: phloem or xylem histogenesis	1.77E-02
131	GO:0042391: regulation of membrane potential	1.77E-02
132	GO:0006662: glycerol ether metabolic process	1.87E-02
133	GO:0042744: hydrogen peroxide catabolic process	1.88E-02
134	GO:0009790: embryo development	1.93E-02
135	GO:0015986: ATP synthesis coupled proton transport	1.97E-02
136	GO:0019252: starch biosynthetic process	2.07E-02
137	GO:0006635: fatty acid beta-oxidation	2.17E-02
138	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.17E-02
139	GO:0002229: defense response to oomycetes	2.17E-02
140	GO:0000302: response to reactive oxygen species	2.17E-02
141	GO:0045490: pectin catabolic process	2.28E-02
142	GO:0071555: cell wall organization	2.47E-02
143	GO:0042742: defense response to bacterium	2.47E-02
144	GO:0010252: auxin homeostasis	2.49E-02
145	GO:0007267: cell-cell signaling	2.60E-02
146	GO:0071805: potassium ion transmembrane transport	2.60E-02
147	GO:0009737: response to abscisic acid	2.71E-02
148	GO:0009816: defense response to bacterium, incompatible interaction	2.94E-02
149	GO:0009627: systemic acquired resistance	3.05E-02
150	GO:0010411: xyloglucan metabolic process	3.17E-02
151	GO:0009817: defense response to fungus, incompatible interaction	3.41E-02
152	GO:0000160: phosphorelay signal transduction system	3.53E-02
153	GO:0009832: plant-type cell wall biogenesis	3.53E-02
154	GO:0010218: response to far red light	3.66E-02
155	GO:0009407: toxin catabolic process	3.66E-02
156	GO:0009631: cold acclimation	3.78E-02
157	GO:0009637: response to blue light	4.03E-02
158	GO:0006810: transport	4.32E-02
159	GO:0009640: photomorphogenesis	4.83E-02
160	GO:0010114: response to red light	4.83E-02
161	GO:0008283: cell proliferation	4.83E-02
162	GO:0042546: cell wall biogenesis	4.97E-02
163	GO:0006412: translation	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:1990534: thermospermine oxidase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
5	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
6	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
7	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
8	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
9	GO:0016788: hydrolase activity, acting on ester bonds	3.57E-05
10	GO:0019843: rRNA binding	5.43E-05
11	GO:0052689: carboxylic ester hydrolase activity	7.60E-05
12	GO:0051920: peroxiredoxin activity	1.13E-04
13	GO:0016209: antioxidant activity	1.91E-04
14	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.20E-04
15	GO:1990136: linoleate 9S-lipoxygenase activity	2.20E-04
16	GO:0015245: fatty acid transporter activity	2.20E-04
17	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.20E-04
18	GO:0008809: carnitine racemase activity	2.20E-04
19	GO:0047746: chlorophyllase activity	4.90E-04
20	GO:0004617: phosphoglycerate dehydrogenase activity	4.90E-04
21	GO:0033201: alpha-1,4-glucan synthase activity	4.90E-04
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.90E-04
23	GO:0016630: protochlorophyllide reductase activity	4.90E-04
24	GO:0004373: glycogen (starch) synthase activity	7.98E-04
25	GO:0005528: FK506 binding	9.27E-04
26	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.12E-03
27	GO:0016851: magnesium chelatase activity	1.14E-03
28	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.14E-03
29	GO:0043023: ribosomal large subunit binding	1.14E-03
30	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.14E-03
31	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.14E-03
32	GO:0030570: pectate lyase activity	1.33E-03
33	GO:0004659: prenyltransferase activity	1.51E-03
34	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.51E-03
35	GO:0009011: starch synthase activity	1.51E-03
36	GO:0043495: protein anchor	1.51E-03
37	GO:0009922: fatty acid elongase activity	1.93E-03
38	GO:0003959: NADPH dehydrogenase activity	1.93E-03
39	GO:0016746: transferase activity, transferring acyl groups	2.17E-03
40	GO:0016688: L-ascorbate peroxidase activity	2.38E-03
41	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.38E-03
42	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.38E-03
43	GO:0004130: cytochrome-c peroxidase activity	2.38E-03
44	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.38E-03
45	GO:0016791: phosphatase activity	2.70E-03
46	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.86E-03
47	GO:0005242: inward rectifier potassium channel activity	2.86E-03
48	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.86E-03
49	GO:0019899: enzyme binding	3.36E-03
50	GO:0016168: chlorophyll binding	3.40E-03
51	GO:0052747: sinapyl alcohol dehydrogenase activity	3.90E-03
52	GO:0004033: aldo-keto reductase (NADP) activity	3.90E-03
53	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	5.06E-03
54	GO:0008289: lipid binding	5.92E-03
55	GO:0030234: enzyme regulator activity	6.32E-03
56	GO:0008047: enzyme activator activity	6.32E-03
57	GO:0004601: peroxidase activity	7.29E-03
58	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.68E-03
59	GO:0004022: alcohol dehydrogenase (NAD) activity	8.39E-03
60	GO:0031072: heat shock protein binding	8.39E-03
61	GO:0005262: calcium channel activity	8.39E-03
62	GO:0004565: beta-galactosidase activity	8.39E-03
63	GO:0008131: primary amine oxidase activity	9.13E-03
64	GO:0008266: poly(U) RNA binding	9.13E-03
65	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.07E-02
66	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.07E-02
67	GO:0031409: pigment binding	1.07E-02
68	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.07E-02
69	GO:0045735: nutrient reservoir activity	1.09E-02
70	GO:0051536: iron-sulfur cluster binding	1.15E-02
71	GO:0033612: receptor serine/threonine kinase binding	1.32E-02
72	GO:0004176: ATP-dependent peptidase activity	1.32E-02
73	GO:0046872: metal ion binding	1.46E-02
74	GO:0022891: substrate-specific transmembrane transporter activity	1.49E-02
75	GO:0008810: cellulase activity	1.49E-02
76	GO:0047134: protein-disulfide reductase activity	1.68E-02
77	GO:0005102: receptor binding	1.68E-02
78	GO:0009055: electron carrier activity	1.72E-02
79	GO:0005249: voltage-gated potassium channel activity	1.77E-02
80	GO:0030551: cyclic nucleotide binding	1.77E-02
81	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.87E-02
82	GO:0004791: thioredoxin-disulfide reductase activity	1.97E-02
83	GO:0050662: coenzyme binding	1.97E-02
84	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.17E-02
85	GO:0048038: quinone binding	2.17E-02
86	GO:0004518: nuclease activity	2.28E-02
87	GO:0000156: phosphorelay response regulator activity	2.38E-02
88	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.38E-02
89	GO:0003735: structural constituent of ribosome	2.42E-02
90	GO:0016759: cellulose synthase activity	2.49E-02
91	GO:0005200: structural constituent of cytoskeleton	2.60E-02
92	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.60E-02
93	GO:0016597: amino acid binding	2.71E-02
94	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.90E-02
95	GO:0042802: identical protein binding	2.90E-02
96	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.05E-02
97	GO:0004683: calmodulin-dependent protein kinase activity	3.17E-02
98	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.17E-02
99	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.29E-02
100	GO:0008168: methyltransferase activity	3.39E-02
101	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.41E-02
102	GO:0016491: oxidoreductase activity	3.69E-02
103	GO:0030145: manganese ion binding	3.78E-02
104	GO:0003993: acid phosphatase activity	4.16E-02
105	GO:0004672: protein kinase activity	4.32E-02
106	GO:0051539: 4 iron, 4 sulfur cluster binding	4.43E-02
107	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.54E-02
108	GO:0030246: carbohydrate binding	4.65E-02
109	GO:0004364: glutathione transferase activity	4.69E-02
110	GO:0005507: copper ion binding	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009535: chloroplast thylakoid membrane	3.08E-22
3	GO:0009507: chloroplast	6.14E-21
4	GO:0009534: chloroplast thylakoid	2.11E-19
5	GO:0009570: chloroplast stroma	1.02E-11
6	GO:0009579: thylakoid	1.14E-11
7	GO:0048046: apoplast	3.22E-10
8	GO:0009941: chloroplast envelope	2.33E-09
9	GO:0009543: chloroplast thylakoid lumen	9.07E-09
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.45E-06
11	GO:0010319: stromule	1.91E-05
12	GO:0031977: thylakoid lumen	8.96E-05
13	GO:0009533: chloroplast stromal thylakoid	1.49E-04
14	GO:0046658: anchored component of plasma membrane	1.94E-04
15	GO:0009923: fatty acid elongase complex	2.20E-04
16	GO:0010287: plastoglobule	4.16E-04
17	GO:0030095: chloroplast photosystem II	6.76E-04
18	GO:0009528: plastid inner membrane	7.98E-04
19	GO:0010007: magnesium chelatase complex	7.98E-04
20	GO:0009897: external side of plasma membrane	7.98E-04
21	GO:0009654: photosystem II oxygen evolving complex	1.02E-03
22	GO:0042651: thylakoid membrane	1.02E-03
23	GO:0015630: microtubule cytoskeleton	1.14E-03
24	GO:0009527: plastid outer membrane	1.51E-03
25	GO:0005618: cell wall	1.55E-03
26	GO:0009523: photosystem II	2.09E-03
27	GO:0019898: extrinsic component of membrane	2.09E-03
28	GO:0005576: extracellular region	2.18E-03
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.38E-03
30	GO:0016021: integral component of membrane	2.70E-03
31	GO:0009505: plant-type cell wall	3.31E-03
32	GO:0009501: amyloplast	3.90E-03
33	GO:0031225: anchored component of membrane	4.70E-03
34	GO:0005840: ribosome	8.04E-03
35	GO:0005578: proteinaceous extracellular matrix	8.39E-03
36	GO:0030076: light-harvesting complex	9.90E-03
37	GO:0009536: plastid	1.06E-02
38	GO:0009706: chloroplast inner membrane	1.32E-02
39	GO:0009532: plastid stroma	1.32E-02
40	GO:0009522: photosystem I	1.97E-02
41	GO:0009707: chloroplast outer membrane	3.41E-02
42	GO:0005874: microtubule	4.21E-02
43	GO:0031969: chloroplast membrane	4.36E-02