co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G01090

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061635: regulation of protein complex stability	0.00E+00
2	GO:0009773: photosynthetic electron transport in photosystem I	5.30E-07
3	GO:0090391: granum assembly	5.94E-07
4	GO:0009772: photosynthetic electron transport in photosystem II	1.45E-05
5	GO:0010196: nonphotochemical quenching	1.45E-05
6	GO:0010027: thylakoid membrane organization	1.84E-05
7	GO:0043686: co-translational protein modification	5.03E-05
8	GO:0035304: regulation of protein dephosphorylation	1.23E-04
9	GO:0010115: regulation of abscisic acid biosynthetic process	1.23E-04
10	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.23E-04
11	GO:0009052: pentose-phosphate shunt, non-oxidative branch	3.09E-04
12	GO:0010021: amylopectin biosynthetic process	4.15E-04
13	GO:0045727: positive regulation of translation	4.15E-04
14	GO:0006564: L-serine biosynthetic process	5.26E-04
15	GO:0045038: protein import into chloroplast thylakoid membrane	5.26E-04
16	GO:0048497: maintenance of floral organ identity	5.26E-04
17	GO:0031365: N-terminal protein amino acid modification	5.26E-04
18	GO:0030308: negative regulation of cell growth	5.26E-04
19	GO:0016120: carotene biosynthetic process	5.26E-04
20	GO:0009913: epidermal cell differentiation	6.44E-04
21	GO:0003006: developmental process involved in reproduction	6.44E-04
22	GO:0006561: proline biosynthetic process	6.44E-04
23	GO:0010304: PSII associated light-harvesting complex II catabolic process	6.44E-04
24	GO:0042549: photosystem II stabilization	6.44E-04
25	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	7.68E-04
26	GO:0006400: tRNA modification	8.97E-04
27	GO:0009395: phospholipid catabolic process	8.97E-04
28	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	8.97E-04
29	GO:0015979: photosynthesis	8.99E-04
30	GO:0006605: protein targeting	1.03E-03
31	GO:0048564: photosystem I assembly	1.03E-03
32	GO:0005978: glycogen biosynthetic process	1.03E-03
33	GO:0032544: plastid translation	1.17E-03
34	GO:0015996: chlorophyll catabolic process	1.17E-03
35	GO:0034765: regulation of ion transmembrane transport	1.32E-03
36	GO:0005982: starch metabolic process	1.47E-03
37	GO:0010205: photoinhibition	1.47E-03
38	GO:0009688: abscisic acid biosynthetic process	1.63E-03
39	GO:0019684: photosynthesis, light reaction	1.79E-03
40	GO:0009750: response to fructose	1.79E-03
41	GO:0016024: CDP-diacylglycerol biosynthetic process	1.96E-03
42	GO:0010628: positive regulation of gene expression	2.14E-03
43	GO:0009735: response to cytokinin	2.26E-03
44	GO:0010207: photosystem II assembly	2.32E-03
45	GO:0010143: cutin biosynthetic process	2.32E-03
46	GO:0045893: positive regulation of transcription, DNA-templated	3.01E-03
47	GO:0009695: jasmonic acid biosynthetic process	3.08E-03
48	GO:0031408: oxylipin biosynthetic process	3.29E-03
49	GO:0040007: growth	3.71E-03
50	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.71E-03
51	GO:0016117: carotenoid biosynthetic process	4.15E-03
52	GO:0080022: primary root development	4.37E-03
53	GO:0000413: protein peptidyl-prolyl isomerization	4.37E-03
54	GO:0042391: regulation of membrane potential	4.37E-03
55	GO:0009958: positive gravitropism	4.60E-03
56	GO:0010182: sugar mediated signaling pathway	4.60E-03
57	GO:0009658: chloroplast organization	4.73E-03
58	GO:0015986: ATP synthesis coupled proton transport	4.83E-03
59	GO:0048825: cotyledon development	5.07E-03
60	GO:0019252: starch biosynthetic process	5.07E-03
61	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	5.32E-03
62	GO:0016032: viral process	5.56E-03
63	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.06E-03
64	GO:0009828: plant-type cell wall loosening	6.07E-03
65	GO:0071805: potassium ion transmembrane transport	6.33E-03
66	GO:0048573: photoperiodism, flowering	7.68E-03
67	GO:0015995: chlorophyll biosynthetic process	7.68E-03
68	GO:0010311: lateral root formation	8.53E-03
69	GO:0008152: metabolic process	9.53E-03
70	GO:0009637: response to blue light	9.73E-03
71	GO:0005975: carbohydrate metabolic process	1.05E-02
72	GO:0055114: oxidation-reduction process	1.15E-02
73	GO:0009664: plant-type cell wall organization	1.37E-02
74	GO:0006364: rRNA processing	1.44E-02
75	GO:0009742: brassinosteroid mediated signaling pathway	1.92E-02
76	GO:0009845: seed germination	2.29E-02
77	GO:0042744: hydrogen peroxide catabolic process	2.37E-02
78	GO:0040008: regulation of growth	2.63E-02
79	GO:0009451: RNA modification	2.76E-02
80	GO:0007166: cell surface receptor signaling pathway	2.99E-02
81	GO:0009826: unidimensional cell growth	3.61E-02
82	GO:0080167: response to karrikin	4.32E-02
83	GO:0006810: transport	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0045436: lycopene beta cyclase activity	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0004321: fatty-acyl-CoA synthase activity	5.03E-05
5	GO:0034256: chlorophyll(ide) b reductase activity	5.03E-05
6	GO:0010242: oxygen evolving activity	5.03E-05
7	GO:0042586: peptide deformylase activity	5.03E-05
8	GO:0008266: poly(U) RNA binding	8.62E-05
9	GO:0003844: 1,4-alpha-glucan branching enzyme activity	1.23E-04
10	GO:0016630: protochlorophyllide reductase activity	1.23E-04
11	GO:0004617: phosphoglycerate dehydrogenase activity	1.23E-04
12	GO:0004751: ribose-5-phosphate isomerase activity	2.11E-04
13	GO:0043169: cation binding	2.11E-04
14	GO:0016597: amino acid binding	4.40E-04
15	GO:0003959: NADPH dehydrogenase activity	5.26E-04
16	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	6.44E-04
17	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	6.44E-04
18	GO:0005242: inward rectifier potassium channel activity	7.68E-04
19	GO:0016207: 4-coumarate-CoA ligase activity	1.32E-03
20	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	1.63E-03
21	GO:0004022: alcohol dehydrogenase (NAD) activity	2.14E-03
22	GO:0004565: beta-galactosidase activity	2.14E-03
23	GO:0019843: rRNA binding	2.24E-03
24	GO:0043424: protein histidine kinase binding	3.08E-03
25	GO:0005249: voltage-gated potassium channel activity	4.37E-03
26	GO:0030551: cyclic nucleotide binding	4.37E-03
27	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	4.60E-03
28	GO:0050662: coenzyme binding	4.83E-03
29	GO:0005509: calcium ion binding	5.58E-03
30	GO:0016791: phosphatase activity	6.07E-03
31	GO:0016491: oxidoreductase activity	8.76E-03
32	GO:0003746: translation elongation factor activity	9.73E-03
33	GO:0003993: acid phosphatase activity	1.00E-02
34	GO:0051539: 4 iron, 4 sulfur cluster binding	1.07E-02
35	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.30E-02
36	GO:0051287: NAD binding	1.33E-02
37	GO:0005515: protein binding	1.62E-02
38	GO:0016874: ligase activity	1.77E-02
39	GO:0016746: transferase activity, transferring acyl groups	1.88E-02
40	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.03E-02
41	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.20E-02
42	GO:0005525: GTP binding	2.53E-02
43	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.59E-02
44	GO:0042802: identical protein binding	3.23E-02
45	GO:0003824: catalytic activity	3.42E-02
46	GO:0004601: peroxidase activity	3.71E-02
47	GO:0016788: hydrolase activity, acting on ester bonds	3.76E-02
48	GO:0004672: protein kinase activity	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009507: chloroplast	7.57E-15
3	GO:0009535: chloroplast thylakoid membrane	6.12E-14
4	GO:0009534: chloroplast thylakoid	5.15E-13
5	GO:0009579: thylakoid	4.89E-10
6	GO:0009570: chloroplast stroma	1.32E-08
7	GO:0031977: thylakoid lumen	2.52E-08
8	GO:0009543: chloroplast thylakoid lumen	3.49E-07
9	GO:0009654: photosystem II oxygen evolving complex	2.41E-06
10	GO:0019898: extrinsic component of membrane	8.80E-06
11	GO:0030095: chloroplast photosystem II	8.62E-05
12	GO:0009941: chloroplast envelope	1.80E-04
13	GO:0010287: plastoglobule	2.03E-04
14	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	6.44E-04
15	GO:0009533: chloroplast stromal thylakoid	8.97E-04
16	GO:0009501: amyloplast	1.03E-03
17	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	1.17E-03
18	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.32E-03
19	GO:0005578: proteinaceous extracellular matrix	2.14E-03
20	GO:0000312: plastid small ribosomal subunit	2.32E-03
21	GO:0010319: stromule	6.33E-03
22	GO:0009505: plant-type cell wall	8.23E-03
23	GO:0048046: apoplast	3.16E-02
24	GO:0022627: cytosolic small ribosomal subunit	3.32E-02
25	GO:0005618: cell wall	3.51E-02
26	GO:0016020: membrane	3.62E-02
27	GO:0031969: chloroplast membrane	4.32E-02