Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G01015

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
2GO:0033494: ferulate metabolic process0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0042407: cristae formation0.00E+00
5GO:0007638: mechanosensory behavior0.00E+00
6GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
7GO:0015739: sialic acid transport0.00E+00
8GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
9GO:0015976: carbon utilization9.31E-07
10GO:0015979: photosynthesis1.90E-05
11GO:0006065: UDP-glucuronate biosynthetic process2.51E-05
12GO:0042254: ribosome biogenesis4.99E-05
13GO:0006412: translation5.30E-05
14GO:2000122: negative regulation of stomatal complex development9.64E-05
15GO:0006546: glycine catabolic process9.64E-05
16GO:0010037: response to carbon dioxide9.64E-05
17GO:0006810: transport1.22E-04
18GO:0006833: water transport1.75E-04
19GO:0010190: cytochrome b6f complex assembly2.14E-04
20GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.02E-04
21GO:0060627: regulation of vesicle-mediated transport4.02E-04
22GO:1904966: positive regulation of vitamin E biosynthetic process4.02E-04
23GO:0010442: guard cell morphogenesis4.02E-04
24GO:0071370: cellular response to gibberellin stimulus4.02E-04
25GO:1901599: (-)-pinoresinol biosynthetic process4.02E-04
26GO:1904964: positive regulation of phytol biosynthetic process4.02E-04
27GO:0042371: vitamin K biosynthetic process4.02E-04
28GO:0042742: defense response to bacterium4.44E-04
29GO:0034220: ion transmembrane transport4.68E-04
30GO:0000413: protein peptidyl-prolyl isomerization4.68E-04
31GO:0045490: pectin catabolic process6.00E-04
32GO:0045454: cell redox homeostasis6.50E-04
33GO:0010583: response to cyclopentenone7.34E-04
34GO:0043039: tRNA aminoacylation8.71E-04
35GO:0052541: plant-type cell wall cellulose metabolic process8.71E-04
36GO:0006695: cholesterol biosynthetic process8.71E-04
37GO:1902326: positive regulation of chlorophyll biosynthetic process8.71E-04
38GO:0010069: zygote asymmetric cytokinesis in embryo sac8.71E-04
39GO:0006423: cysteinyl-tRNA aminoacylation8.71E-04
40GO:0030388: fructose 1,6-bisphosphate metabolic process8.71E-04
41GO:2000123: positive regulation of stomatal complex development8.71E-04
42GO:0010424: DNA methylation on cytosine within a CG sequence8.71E-04
43GO:0007267: cell-cell signaling9.28E-04
44GO:0009773: photosynthetic electron transport in photosystem I1.08E-03
45GO:0010411: xyloglucan metabolic process1.32E-03
46GO:0090506: axillary shoot meristem initiation1.41E-03
47GO:0006000: fructose metabolic process1.41E-03
48GO:0006518: peptide metabolic process1.41E-03
49GO:0071492: cellular response to UV-A1.41E-03
50GO:0006696: ergosterol biosynthetic process1.41E-03
51GO:0015840: urea transport1.41E-03
52GO:0055085: transmembrane transport1.50E-03
53GO:0010020: chloroplast fission1.57E-03
54GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.00E-03
55GO:0006241: CTP biosynthetic process2.04E-03
56GO:0080170: hydrogen peroxide transmembrane transport2.04E-03
57GO:0006424: glutamyl-tRNA aminoacylation2.04E-03
58GO:0006165: nucleoside diphosphate phosphorylation2.04E-03
59GO:0006228: UTP biosynthetic process2.04E-03
60GO:0043572: plastid fission2.04E-03
61GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.04E-03
62GO:0007231: osmosensory signaling pathway2.04E-03
63GO:0006418: tRNA aminoacylation for protein translation2.41E-03
64GO:0009735: response to cytokinin2.57E-03
65GO:0061077: chaperone-mediated protein folding2.65E-03
66GO:0019464: glycine decarboxylation via glycine cleavage system2.74E-03
67GO:0009765: photosynthesis, light harvesting2.74E-03
68GO:0006183: GTP biosynthetic process2.74E-03
69GO:0033500: carbohydrate homeostasis2.74E-03
70GO:2000038: regulation of stomatal complex development2.74E-03
71GO:0006808: regulation of nitrogen utilization2.74E-03
72GO:0071486: cellular response to high light intensity2.74E-03
73GO:0042546: cell wall biogenesis2.95E-03
74GO:0009294: DNA mediated transformation3.16E-03
75GO:0019722: calcium-mediated signaling3.44E-03
76GO:0010375: stomatal complex patterning3.51E-03
77GO:0032543: mitochondrial translation3.51E-03
78GO:0016120: carotene biosynthetic process3.51E-03
79GO:0016123: xanthophyll biosynthetic process3.51E-03
80GO:0016117: carotenoid biosynthetic process3.73E-03
81GO:0042335: cuticle development4.03E-03
82GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.35E-03
83GO:0006796: phosphate-containing compound metabolic process4.35E-03
84GO:0016554: cytidine to uridine editing4.35E-03
85GO:0042549: photosystem II stabilization4.35E-03
86GO:0055114: oxidation-reduction process4.48E-03
87GO:0009955: adaxial/abaxial pattern specification5.24E-03
88GO:0042372: phylloquinone biosynthetic process5.24E-03
89GO:0009612: response to mechanical stimulus5.24E-03
90GO:0010067: procambium histogenesis5.24E-03
91GO:0006694: steroid biosynthetic process5.24E-03
92GO:1901259: chloroplast rRNA processing5.24E-03
93GO:0048444: floral organ morphogenesis5.24E-03
94GO:0010555: response to mannitol5.24E-03
95GO:0071554: cell wall organization or biogenesis5.36E-03
96GO:0009658: chloroplast organization5.52E-03
97GO:0009645: response to low light intensity stimulus6.19E-03
98GO:0050790: regulation of catalytic activity6.19E-03
99GO:0007155: cell adhesion7.20E-03
100GO:0030091: protein repair7.20E-03
101GO:0009642: response to light intensity7.20E-03
102GO:0016126: sterol biosynthetic process7.77E-03
103GO:0009932: cell tip growth8.26E-03
104GO:0006002: fructose 6-phosphate metabolic process8.26E-03
105GO:0006526: arginine biosynthetic process8.26E-03
106GO:0009657: plastid organization8.26E-03
107GO:0032544: plastid translation8.26E-03
108GO:0017004: cytochrome complex assembly8.26E-03
109GO:0009808: lignin metabolic process8.26E-03
110GO:0010206: photosystem II repair9.38E-03
111GO:0045337: farnesyl diphosphate biosynthetic process9.38E-03
112GO:0033384: geranyl diphosphate biosynthetic process9.38E-03
113GO:0006783: heme biosynthetic process9.38E-03
114GO:0048589: developmental growth9.38E-03
115GO:0015780: nucleotide-sugar transport9.38E-03
116GO:0009817: defense response to fungus, incompatible interaction1.02E-02
117GO:0018298: protein-chromophore linkage1.02E-02
118GO:0043067: regulation of programmed cell death1.06E-02
119GO:0006779: porphyrin-containing compound biosynthetic process1.06E-02
120GO:0006349: regulation of gene expression by genetic imprinting1.06E-02
121GO:1900865: chloroplast RNA modification1.06E-02
122GO:0006869: lipid transport1.16E-02
123GO:0010119: regulation of stomatal movement1.18E-02
124GO:0009870: defense response signaling pathway, resistance gene-dependent1.18E-02
125GO:0006782: protoporphyrinogen IX biosynthetic process1.18E-02
126GO:0043069: negative regulation of programmed cell death1.18E-02
127GO:0006949: syncytium formation1.18E-02
128GO:0071555: cell wall organization1.22E-02
129GO:0016051: carbohydrate biosynthetic process1.29E-02
130GO:0019684: photosynthesis, light reaction1.30E-02
131GO:0006816: calcium ion transport1.30E-02
132GO:0009089: lysine biosynthetic process via diaminopimelate1.30E-02
133GO:0043085: positive regulation of catalytic activity1.30E-02
134GO:0018119: peptidyl-cysteine S-nitrosylation1.30E-02
135GO:0006415: translational termination1.30E-02
136GO:0009807: lignan biosynthetic process1.30E-02
137GO:0010216: maintenance of DNA methylation1.30E-02
138GO:0006790: sulfur compound metabolic process1.44E-02
139GO:0045037: protein import into chloroplast stroma1.44E-02
140GO:0006631: fatty acid metabolic process1.54E-02
141GO:0005986: sucrose biosynthetic process1.57E-02
142GO:0050826: response to freezing1.57E-02
143GO:0009725: response to hormone1.57E-02
144GO:0006094: gluconeogenesis1.57E-02
145GO:0009767: photosynthetic electron transport chain1.57E-02
146GO:0010143: cutin biosynthetic process1.71E-02
147GO:0010207: photosystem II assembly1.71E-02
148GO:0010223: secondary shoot formation1.71E-02
149GO:0019253: reductive pentose-phosphate cycle1.71E-02
150GO:0009934: regulation of meristem structural organization1.71E-02
151GO:0008643: carbohydrate transport1.81E-02
152GO:0005985: sucrose metabolic process1.86E-02
153GO:0070588: calcium ion transmembrane transport1.86E-02
154GO:0046854: phosphatidylinositol phosphorylation1.86E-02
155GO:0006636: unsaturated fatty acid biosynthetic process2.01E-02
156GO:0006071: glycerol metabolic process2.01E-02
157GO:0009826: unidimensional cell growth2.15E-02
158GO:0019344: cysteine biosynthetic process2.16E-02
159GO:0000027: ribosomal large subunit assembly2.16E-02
160GO:0007010: cytoskeleton organization2.16E-02
161GO:0051302: regulation of cell division2.32E-02
162GO:0010026: trichome differentiation2.32E-02
163GO:0009768: photosynthesis, light harvesting in photosystem I2.32E-02
164GO:0007017: microtubule-based process2.32E-02
165GO:0009793: embryo development ending in seed dormancy2.48E-02
166GO:0080092: regulation of pollen tube growth2.64E-02
167GO:0019748: secondary metabolic process2.64E-02
168GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.81E-02
169GO:0001944: vasculature development2.81E-02
170GO:0010089: xylem development2.99E-02
171GO:0042545: cell wall modification3.11E-02
172GO:0000271: polysaccharide biosynthetic process3.34E-02
173GO:0080022: primary root development3.34E-02
174GO:0010087: phloem or xylem histogenesis3.34E-02
175GO:0006520: cellular amino acid metabolic process3.53E-02
176GO:0045489: pectin biosynthetic process3.53E-02
177GO:0006662: glycerol ether metabolic process3.53E-02
178GO:0010197: polar nucleus fusion3.53E-02
179GO:0019252: starch biosynthetic process3.90E-02
180GO:0002229: defense response to oomycetes4.09E-02
181GO:0016132: brassinosteroid biosynthetic process4.09E-02
182GO:0007264: small GTPase mediated signal transduction4.29E-02
183GO:0006508: proteolysis4.38E-02
184GO:1901657: glycosyl compound metabolic process4.49E-02
185GO:0009828: plant-type cell wall loosening4.69E-02
RankGO TermAdjusted P value
1GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
2GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
3GO:0050613: delta14-sterol reductase activity0.00E+00
4GO:0015136: sialic acid transmembrane transporter activity0.00E+00
5GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
6GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
12GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
13GO:0050614: delta24-sterol reductase activity0.00E+00
14GO:0019843: rRNA binding9.16E-10
15GO:0051920: peroxiredoxin activity6.38E-08
16GO:0016209: antioxidant activity2.25E-07
17GO:0003735: structural constituent of ribosome5.50E-06
18GO:0003979: UDP-glucose 6-dehydrogenase activity2.51E-05
19GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.63E-05
20GO:0004089: carbonate dehydratase activity1.05E-04
21GO:0030570: pectate lyase activity3.40E-04
22GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.02E-04
23GO:0080132: fatty acid alpha-hydroxylase activity4.02E-04
24GO:0003838: sterol 24-C-methyltransferase activity4.02E-04
25GO:0004831: tyrosine-tRNA ligase activity4.02E-04
26GO:0004655: porphobilinogen synthase activity4.02E-04
27GO:0051996: squalene synthase activity4.02E-04
28GO:0042349: guiding stereospecific synthesis activity4.02E-04
29GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.02E-04
30GO:0016762: xyloglucan:xyloglucosyl transferase activity6.76E-04
31GO:0004047: aminomethyltransferase activity8.71E-04
32GO:0004817: cysteine-tRNA ligase activity8.71E-04
33GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.71E-04
34GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase8.71E-04
35GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.71E-04
36GO:0042389: omega-3 fatty acid desaturase activity8.71E-04
37GO:0016722: oxidoreductase activity, oxidizing metal ions9.28E-04
38GO:0015250: water channel activity1.07E-03
39GO:0016168: chlorophyll binding1.15E-03
40GO:0016798: hydrolase activity, acting on glycosyl bonds1.32E-03
41GO:0005504: fatty acid binding1.41E-03
42GO:0017150: tRNA dihydrouridine synthase activity1.41E-03
43GO:0050734: hydroxycinnamoyltransferase activity1.41E-03
44GO:0002161: aminoacyl-tRNA editing activity1.41E-03
45GO:0004148: dihydrolipoyl dehydrogenase activity1.41E-03
46GO:0030267: glyoxylate reductase (NADP) activity1.41E-03
47GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.41E-03
48GO:0004375: glycine dehydrogenase (decarboxylating) activity2.04E-03
49GO:0016149: translation release factor activity, codon specific2.04E-03
50GO:0004550: nucleoside diphosphate kinase activity2.04E-03
51GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.04E-03
52GO:0005528: FK506 binding2.18E-03
53GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.74E-03
54GO:0004045: aminoacyl-tRNA hydrolase activity2.74E-03
55GO:0045430: chalcone isomerase activity2.74E-03
56GO:0043495: protein anchor2.74E-03
57GO:0015204: urea transmembrane transporter activity2.74E-03
58GO:0004659: prenyltransferase activity2.74E-03
59GO:0022891: substrate-specific transmembrane transporter activity3.16E-03
60GO:0004040: amidase activity3.51E-03
61GO:0051287: NAD binding3.58E-03
62GO:0004812: aminoacyl-tRNA ligase activity3.73E-03
63GO:0042802: identical protein binding4.08E-03
64GO:0016208: AMP binding4.35E-03
65GO:0016462: pyrophosphatase activity4.35E-03
66GO:0042578: phosphoric ester hydrolase activity4.35E-03
67GO:0008200: ion channel inhibitor activity4.35E-03
68GO:0051753: mannan synthase activity5.24E-03
69GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.24E-03
70GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.24E-03
71GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.24E-03
72GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.24E-03
73GO:0003886: DNA (cytosine-5-)-methyltransferase activity5.24E-03
74GO:0004601: peroxidase activity5.52E-03
75GO:0030599: pectinesterase activity5.96E-03
76GO:0005338: nucleotide-sugar transmembrane transporter activity6.19E-03
77GO:0004427: inorganic diphosphatase activity6.19E-03
78GO:0019899: enzyme binding6.19E-03
79GO:0005200: structural constituent of cytoskeleton6.91E-03
80GO:0004033: aldo-keto reductase (NADP) activity7.20E-03
81GO:0004564: beta-fructofuranosidase activity7.20E-03
82GO:0016413: O-acetyltransferase activity7.34E-03
83GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water8.26E-03
84GO:0004337: geranyltranstransferase activity9.38E-03
85GO:0008889: glycerophosphodiester phosphodiesterase activity9.38E-03
86GO:0003747: translation release factor activity9.38E-03
87GO:0004575: sucrose alpha-glucosidase activity1.06E-02
88GO:0004222: metalloendopeptidase activity1.12E-02
89GO:0008047: enzyme activator activity1.18E-02
90GO:0005089: Rho guanyl-nucleotide exchange factor activity1.30E-02
91GO:0008794: arsenate reductase (glutaredoxin) activity1.30E-02
92GO:0004161: dimethylallyltranstransferase activity1.30E-02
93GO:0003924: GTPase activity1.38E-02
94GO:0000049: tRNA binding1.44E-02
95GO:0009055: electron carrier activity1.54E-02
96GO:0004565: beta-galactosidase activity1.57E-02
97GO:0031072: heat shock protein binding1.57E-02
98GO:0005262: calcium channel activity1.57E-02
99GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.65E-02
100GO:0004185: serine-type carboxypeptidase activity1.67E-02
101GO:0051537: 2 iron, 2 sulfur cluster binding1.81E-02
102GO:0005507: copper ion binding1.88E-02
103GO:0031409: pigment binding2.01E-02
104GO:0008289: lipid binding2.27E-02
105GO:0043424: protein histidine kinase binding2.32E-02
106GO:0008324: cation transmembrane transporter activity2.32E-02
107GO:0004176: ATP-dependent peptidase activity2.48E-02
108GO:0033612: receptor serine/threonine kinase binding2.48E-02
109GO:0045330: aspartyl esterase activity2.50E-02
110GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.64E-02
111GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.75E-02
112GO:0004650: polygalacturonase activity2.93E-02
113GO:0008514: organic anion transmembrane transporter activity2.99E-02
114GO:0005102: receptor binding3.16E-02
115GO:0047134: protein-disulfide reductase activity3.16E-02
116GO:0015035: protein disulfide oxidoreductase activity3.30E-02
117GO:0004791: thioredoxin-disulfide reductase activity3.71E-02
118GO:0004871: signal transducer activity3.90E-02
119GO:0004872: receptor activity3.90E-02
120GO:0019901: protein kinase binding3.90E-02
121GO:0048038: quinone binding4.09E-02
122GO:0016740: transferase activity4.32E-02
123GO:0016829: lyase activity4.33E-02
124GO:0000156: phosphorelay response regulator activity4.49E-02
125GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.49E-02
126GO:0016759: cellulose synthase activity4.69E-02
127GO:0008483: transaminase activity4.90E-02
128GO:0008237: metallopeptidase activity4.90E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast2.22E-29
4GO:0009570: chloroplast stroma7.05E-27
5GO:0009535: chloroplast thylakoid membrane2.17E-19
6GO:0009941: chloroplast envelope4.05E-18
7GO:0009543: chloroplast thylakoid lumen6.42E-14
8GO:0048046: apoplast5.88E-13
9GO:0009579: thylakoid2.67E-12
10GO:0031977: thylakoid lumen2.08E-10
11GO:0031225: anchored component of membrane2.26E-10
12GO:0046658: anchored component of plasma membrane1.15E-09
13GO:0009505: plant-type cell wall5.55E-08
14GO:0009654: photosystem II oxygen evolving complex3.49E-07
15GO:0009534: chloroplast thylakoid2.75E-06
16GO:0005618: cell wall2.77E-06
17GO:0005576: extracellular region1.12E-05
18GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.20E-05
19GO:0005840: ribosome3.31E-05
20GO:0019898: extrinsic component of membrane5.62E-05
21GO:0030095: chloroplast photosystem II1.26E-04
22GO:0009344: nitrite reductase complex [NAD(P)H]4.02E-04
23GO:0042170: plastid membrane8.71E-04
24GO:0010319: stromule9.28E-04
25GO:0005773: vacuole1.14E-03
26GO:0000311: plastid large ribosomal subunit1.23E-03
27GO:0016020: membrane1.46E-03
28GO:0015934: large ribosomal subunit1.80E-03
29GO:0005775: vacuolar lumen2.04E-03
30GO:0005960: glycine cleavage complex2.04E-03
31GO:0042651: thylakoid membrane2.41E-03
32GO:0010168: ER body4.35E-03
33GO:0009523: photosystem II5.01E-03
34GO:0009533: chloroplast stromal thylakoid6.19E-03
35GO:0042807: central vacuole6.19E-03
36GO:0009706: chloroplast inner membrane6.44E-03
37GO:0031969: chloroplast membrane7.65E-03
38GO:0010287: plastoglobule8.01E-03
39GO:0009539: photosystem II reaction center8.26E-03
40GO:0000326: protein storage vacuole8.26E-03
41GO:0045298: tubulin complex9.38E-03
42GO:0005763: mitochondrial small ribosomal subunit9.38E-03
43GO:0022626: cytosolic ribosome9.47E-03
44GO:0009506: plasmodesma1.04E-02
45GO:0016324: apical plasma membrane1.18E-02
46GO:0000325: plant-type vacuole1.18E-02
47GO:0031012: extracellular matrix1.57E-02
48GO:0009536: plastid1.81E-02
49GO:0030176: integral component of endoplasmic reticulum membrane1.86E-02
50GO:0030076: light-harvesting complex1.86E-02
51GO:0005875: microtubule associated complex2.01E-02
52GO:0005886: plasma membrane2.08E-02
53GO:0005758: mitochondrial intermembrane space2.16E-02
54GO:0005887: integral component of plasma membrane2.18E-02
55GO:0015935: small ribosomal subunit2.48E-02
56GO:0009532: plastid stroma2.48E-02
57GO:0005874: microtubule2.82E-02
58GO:0009522: photosystem I3.71E-02
59GO:0005778: peroxisomal membrane4.90E-02
Gene type



Gene DE type