GO Enrichment Analysis of Co-expressed Genes with
AT4G40060
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015995: chlorophyll biosynthetic process | 7.37E-06 |
| 2 | GO:0015979: photosynthesis | 2.56E-05 |
| 3 | GO:0051180: vitamin transport | 2.88E-05 |
| 4 | GO:0030974: thiamine pyrophosphate transport | 2.88E-05 |
| 5 | GO:0043255: regulation of carbohydrate biosynthetic process | 7.28E-05 |
| 6 | GO:0010115: regulation of abscisic acid biosynthetic process | 7.28E-05 |
| 7 | GO:0001736: establishment of planar polarity | 7.28E-05 |
| 8 | GO:0010024: phytochromobilin biosynthetic process | 7.28E-05 |
| 9 | GO:0015893: drug transport | 7.28E-05 |
| 10 | GO:0009735: response to cytokinin | 1.03E-04 |
| 11 | GO:0015714: phosphoenolpyruvate transport | 1.27E-04 |
| 12 | GO:0006788: heme oxidation | 1.27E-04 |
| 13 | GO:0071484: cellular response to light intensity | 1.89E-04 |
| 14 | GO:0010021: amylopectin biosynthetic process | 2.57E-04 |
| 15 | GO:0045727: positive regulation of translation | 2.57E-04 |
| 16 | GO:0015713: phosphoglycerate transport | 2.57E-04 |
| 17 | GO:0016120: carotene biosynthetic process | 3.30E-04 |
| 18 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 4.06E-04 |
| 19 | GO:0010337: regulation of salicylic acid metabolic process | 4.06E-04 |
| 20 | GO:0006561: proline biosynthetic process | 4.06E-04 |
| 21 | GO:0042549: photosystem II stabilization | 4.06E-04 |
| 22 | GO:0007035: vacuolar acidification | 4.06E-04 |
| 23 | GO:1900057: positive regulation of leaf senescence | 5.68E-04 |
| 24 | GO:0009395: phospholipid catabolic process | 5.68E-04 |
| 25 | GO:0009772: photosynthetic electron transport in photosystem II | 5.68E-04 |
| 26 | GO:0005978: glycogen biosynthetic process | 6.55E-04 |
| 27 | GO:0032544: plastid translation | 7.44E-04 |
| 28 | GO:0010206: photosystem II repair | 8.35E-04 |
| 29 | GO:0005982: starch metabolic process | 9.29E-04 |
| 30 | GO:0006032: chitin catabolic process | 1.03E-03 |
| 31 | GO:0009688: abscisic acid biosynthetic process | 1.03E-03 |
| 32 | GO:0048829: root cap development | 1.03E-03 |
| 33 | GO:0009750: response to fructose | 1.13E-03 |
| 34 | GO:0018119: peptidyl-cysteine S-nitrosylation | 1.13E-03 |
| 35 | GO:0048765: root hair cell differentiation | 1.13E-03 |
| 36 | GO:0009773: photosynthetic electron transport in photosystem I | 1.13E-03 |
| 37 | GO:0016024: CDP-diacylglycerol biosynthetic process | 1.23E-03 |
| 38 | GO:0009718: anthocyanin-containing compound biosynthetic process | 1.34E-03 |
| 39 | GO:0010207: photosystem II assembly | 1.45E-03 |
| 40 | GO:0010143: cutin biosynthetic process | 1.45E-03 |
| 41 | GO:0010053: root epidermal cell differentiation | 1.56E-03 |
| 42 | GO:0009825: multidimensional cell growth | 1.56E-03 |
| 43 | GO:0010167: response to nitrate | 1.56E-03 |
| 44 | GO:0009695: jasmonic acid biosynthetic process | 1.92E-03 |
| 45 | GO:0031408: oxylipin biosynthetic process | 2.04E-03 |
| 46 | GO:0003333: amino acid transmembrane transport | 2.04E-03 |
| 47 | GO:0016998: cell wall macromolecule catabolic process | 2.04E-03 |
| 48 | GO:0015992: proton transport | 2.04E-03 |
| 49 | GO:0016117: carotenoid biosynthetic process | 2.57E-03 |
| 50 | GO:0009958: positive gravitropism | 2.84E-03 |
| 51 | GO:0010182: sugar mediated signaling pathway | 2.84E-03 |
| 52 | GO:0015986: ATP synthesis coupled proton transport | 2.99E-03 |
| 53 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.99E-03 |
| 54 | GO:0019252: starch biosynthetic process | 3.13E-03 |
| 55 | GO:0009408: response to heat | 4.25E-03 |
| 56 | GO:0030244: cellulose biosynthetic process | 5.05E-03 |
| 57 | GO:0010311: lateral root formation | 5.22E-03 |
| 58 | GO:0006865: amino acid transport | 5.76E-03 |
| 59 | GO:0009734: auxin-activated signaling pathway | 5.97E-03 |
| 60 | GO:0006839: mitochondrial transport | 6.50E-03 |
| 61 | GO:0009926: auxin polar transport | 7.08E-03 |
| 62 | GO:0045893: positive regulation of transcription, DNA-templated | 8.62E-03 |
| 63 | GO:0009809: lignin biosynthetic process | 8.71E-03 |
| 64 | GO:0006364: rRNA processing | 8.71E-03 |
| 65 | GO:0006096: glycolytic process | 9.79E-03 |
| 66 | GO:0042545: cell wall modification | 1.09E-02 |
| 67 | GO:0009624: response to nematode | 1.12E-02 |
| 68 | GO:0009742: brassinosteroid mediated signaling pathway | 1.16E-02 |
| 69 | GO:0009414: response to water deprivation | 1.49E-02 |
| 70 | GO:0006633: fatty acid biosynthetic process | 1.54E-02 |
| 71 | GO:0040008: regulation of growth | 1.59E-02 |
| 72 | GO:0045490: pectin catabolic process | 1.64E-02 |
| 73 | GO:0009733: response to auxin | 1.71E-02 |
| 74 | GO:0006810: transport | 2.24E-02 |
| 75 | GO:0009658: chloroplast organization | 2.24E-02 |
| 76 | GO:0009723: response to ethylene | 2.48E-02 |
| 77 | GO:0032259: methylation | 3.34E-02 |
| 78 | GO:0016310: phosphorylation | 3.74E-02 |
| 79 | GO:0009873: ethylene-activated signaling pathway | 4.13E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 2 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 3 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 4 | GO:0004321: fatty-acyl-CoA synthase activity | 2.88E-05 |
| 5 | GO:0090422: thiamine pyrophosphate transporter activity | 2.88E-05 |
| 6 | GO:0015121: phosphoenolpyruvate:phosphate antiporter activity | 2.88E-05 |
| 7 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 7.28E-05 |
| 8 | GO:0043169: cation binding | 1.27E-04 |
| 9 | GO:0016851: magnesium chelatase activity | 1.89E-04 |
| 10 | GO:0004392: heme oxygenase (decyclizing) activity | 2.57E-04 |
| 11 | GO:0015120: phosphoglycerate transmembrane transporter activity | 2.57E-04 |
| 12 | GO:0010011: auxin binding | 2.57E-04 |
| 13 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 2.57E-04 |
| 14 | GO:0010328: auxin influx transmembrane transporter activity | 2.57E-04 |
| 15 | GO:0052793: pectin acetylesterase activity | 2.57E-04 |
| 16 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 4.06E-04 |
| 17 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 4.06E-04 |
| 18 | GO:0016207: 4-coumarate-CoA ligase activity | 8.35E-04 |
| 19 | GO:0004568: chitinase activity | 1.03E-03 |
| 20 | GO:0046961: proton-transporting ATPase activity, rotational mechanism | 1.13E-03 |
| 21 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.34E-03 |
| 22 | GO:0008266: poly(U) RNA binding | 1.45E-03 |
| 23 | GO:0008146: sulfotransferase activity | 1.56E-03 |
| 24 | GO:0005215: transporter activity | 2.82E-03 |
| 25 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 2.84E-03 |
| 26 | GO:0050662: coenzyme binding | 2.99E-03 |
| 27 | GO:0016791: phosphatase activity | 3.73E-03 |
| 28 | GO:0004672: protein kinase activity | 4.04E-03 |
| 29 | GO:0030247: polysaccharide binding | 4.71E-03 |
| 30 | GO:0003993: acid phosphatase activity | 6.13E-03 |
| 31 | GO:0016887: ATPase activity | 6.56E-03 |
| 32 | GO:0015293: symporter activity | 7.68E-03 |
| 33 | GO:0003690: double-stranded DNA binding | 8.92E-03 |
| 34 | GO:0015171: amino acid transmembrane transporter activity | 9.36E-03 |
| 35 | GO:0045330: aspartyl esterase activity | 9.36E-03 |
| 36 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 9.92E-03 |
| 37 | GO:0016874: ligase activity | 1.07E-02 |
| 38 | GO:0030599: pectinesterase activity | 1.07E-02 |
| 39 | GO:0003779: actin binding | 1.09E-02 |
| 40 | GO:0016746: transferase activity, transferring acyl groups | 1.14E-02 |
| 41 | GO:0019843: rRNA binding | 1.31E-02 |
| 42 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 1.33E-02 |
| 43 | GO:0046910: pectinesterase inhibitor activity | 1.56E-02 |
| 44 | GO:0015297: antiporter activity | 1.59E-02 |
| 45 | GO:0042802: identical protein binding | 1.95E-02 |
| 46 | GO:0046983: protein dimerization activity | 2.04E-02 |
| 47 | GO:0016788: hydrolase activity, acting on ester bonds | 2.27E-02 |
| 48 | GO:0052689: carboxylic ester hydrolase activity | 2.80E-02 |
| 49 | GO:0009055: electron carrier activity | 3.62E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010240: plastid pyruvate dehydrogenase complex | 0.00E+00 |
| 2 | GO:0009579: thylakoid | 5.85E-07 |
| 3 | GO:0009534: chloroplast thylakoid | 1.28E-05 |
| 4 | GO:0030095: chloroplast photosystem II | 3.80E-05 |
| 5 | GO:0009507: chloroplast | 5.77E-05 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 7.85E-05 |
| 7 | GO:0010007: magnesium chelatase complex | 1.27E-04 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 2.30E-04 |
| 9 | GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain | 3.30E-04 |
| 10 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 4.06E-04 |
| 11 | GO:0031977: thylakoid lumen | 4.50E-04 |
| 12 | GO:0009986: cell surface | 5.68E-04 |
| 13 | GO:0009501: amyloplast | 6.55E-04 |
| 14 | GO:0008180: COP9 signalosome | 8.35E-04 |
| 15 | GO:0010287: plastoglobule | 1.07E-03 |
| 16 | GO:0009570: chloroplast stroma | 1.57E-03 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 1.92E-03 |
| 18 | GO:0031969: chloroplast membrane | 2.89E-03 |
| 19 | GO:0019898: extrinsic component of membrane | 3.13E-03 |
| 20 | GO:0010319: stromule | 3.89E-03 |
| 21 | GO:0009941: chloroplast envelope | 4.03E-03 |
| 22 | GO:0019005: SCF ubiquitin ligase complex | 5.05E-03 |
| 23 | GO:0000502: proteasome complex | 8.71E-03 |
| 24 | GO:0005768: endosome | 1.37E-02 |
| 25 | GO:0009505: plant-type cell wall | 1.91E-02 |
| 26 | GO:0005886: plasma membrane | 2.41E-02 |
| 27 | GO:0005794: Golgi apparatus | 3.02E-02 |
| 28 | GO:0005743: mitochondrial inner membrane | 3.27E-02 |