co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G40040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0050999: regulation of nitric-oxide synthase activity	0.00E+00
2	GO:0045022: early endosome to late endosome transport	0.00E+00
3	GO:1901799: negative regulation of proteasomal protein catabolic process	0.00E+00
4	GO:0045596: negative regulation of cell differentiation	0.00E+00
5	GO:0070534: protein K63-linked ubiquitination	1.51E-06
6	GO:0006301: postreplication repair	4.00E-06
7	GO:1902000: homogentisate catabolic process	8.78E-05
8	GO:0031648: protein destabilization	8.78E-05
9	GO:0051170: nuclear import	8.78E-05
10	GO:0033523: histone H2B ubiquitination	1.52E-04
11	GO:0045910: negative regulation of DNA recombination	1.52E-04
12	GO:0016032: viral process	2.16E-04
13	GO:0006572: tyrosine catabolic process	2.25E-04
14	GO:0051259: protein oligomerization	2.25E-04
15	GO:0007231: osmosensory signaling pathway	2.25E-04
16	GO:0006914: autophagy	2.46E-04
17	GO:0010222: stem vascular tissue pattern formation	3.05E-04
18	GO:0009652: thigmotropism	3.05E-04
19	GO:0006511: ubiquitin-dependent protein catabolic process	3.09E-04
20	GO:0046907: intracellular transport	3.89E-04
21	GO:0006499: N-terminal protein myristoylation	4.23E-04
22	GO:0006559: L-phenylalanine catabolic process	4.78E-04
23	GO:0006333: chromatin assembly or disassembly	6.66E-04
24	GO:0008272: sulfate transport	6.66E-04
25	GO:0007140: male meiotic nuclear division	7.68E-04
26	GO:0016559: peroxisome fission	7.68E-04
27	GO:0009970: cellular response to sulfate starvation	1.20E-03
28	GO:0071365: cellular response to auxin stimulus	1.44E-03
29	GO:0000266: mitochondrial fission	1.44E-03
30	GO:0010039: response to iron ion	1.84E-03
31	GO:0007033: vacuole organization	1.84E-03
32	GO:0010053: root epidermal cell differentiation	1.84E-03
33	GO:0010228: vegetative to reproductive phase transition of meristem	2.04E-03
34	GO:0006289: nucleotide-excision repair	2.12E-03
35	GO:2000377: regulation of reactive oxygen species metabolic process	2.12E-03
36	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.17E-03
37	GO:0007005: mitochondrion organization	2.56E-03
38	GO:0009294: DNA mediated transformation	2.71E-03
39	GO:0009306: protein secretion	2.87E-03
40	GO:0000226: microtubule cytoskeleton organization	3.20E-03
41	GO:0007059: chromosome segregation	3.53E-03
42	GO:0006623: protein targeting to vacuole	3.70E-03
43	GO:0007264: small GTPase mediated signal transduction	4.06E-03
44	GO:0006464: cellular protein modification process	4.42E-03
45	GO:0006904: vesicle docking involved in exocytosis	4.60E-03
46	GO:0010286: heat acclimation	4.60E-03
47	GO:0015031: protein transport	4.63E-03
48	GO:0006974: cellular response to DNA damage stimulus	5.38E-03
49	GO:0006906: vesicle fusion	5.38E-03
50	GO:0006950: response to stress	5.58E-03
51	GO:0007568: aging	6.61E-03
52	GO:0009910: negative regulation of flower development	6.61E-03
53	GO:0009873: ethylene-activated signaling pathway	7.01E-03
54	GO:0009853: photorespiration	7.05E-03
55	GO:0006887: exocytosis	7.95E-03
56	GO:0006897: endocytosis	7.95E-03
57	GO:0009640: photomorphogenesis	8.41E-03
58	GO:0000209: protein polyubiquitination	8.65E-03
59	GO:0009965: leaf morphogenesis	9.12E-03
60	GO:0010150: leaf senescence	1.96E-02
61	GO:0006979: response to oxidative stress	1.97E-02
62	GO:0006970: response to osmotic stress	2.82E-02
63	GO:0046686: response to cadmium ion	3.05E-02
64	GO:0010200: response to chitin	3.19E-02
65	GO:0016192: vesicle-mediated transport	3.23E-02
66	GO:0045454: cell redox homeostasis	3.54E-02
67	GO:0007165: signal transduction	4.07E-02
68	GO:0006281: DNA repair	4.11E-02

Rank	GO Term	Adjusted P value
1	GO:0051019: mitogen-activated protein kinase binding	0.00E+00
2	GO:0004411: homogentisate 1,2-dioxygenase activity	0.00E+00
3	GO:0019707: protein-cysteine S-acyltransferase activity	3.50E-05
4	GO:0030544: Hsp70 protein binding	3.50E-05
5	GO:0019786: Atg8-specific protease activity	3.50E-05
6	GO:0061630: ubiquitin protein ligase activity	3.57E-05
7	GO:0031625: ubiquitin protein ligase binding	5.58E-05
8	GO:0019779: Atg8 activating enzyme activity	8.78E-05
9	GO:0005515: protein binding	1.96E-04
10	GO:0004792: thiosulfate sulfurtransferase activity	2.25E-04
11	GO:0030527: structural constituent of chromatin	2.25E-04
12	GO:0070628: proteasome binding	3.05E-04
13	GO:0019776: Atg8 ligase activity	3.05E-04
14	GO:0016004: phospholipase activator activity	3.05E-04
15	GO:0005525: GTP binding	4.18E-04
16	GO:0031593: polyubiquitin binding	4.78E-04
17	GO:0008113: peptide-methionine (S)-S-oxide reductase activity	5.70E-04
18	GO:0035091: phosphatidylinositol binding	6.67E-04
19	GO:0003924: GTPase activity	6.94E-04
20	GO:0004842: ubiquitin-protein transferase activity	9.34E-04
21	GO:0043130: ubiquitin binding	2.12E-03
22	GO:0003682: chromatin binding	3.16E-03
23	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.24E-03
24	GO:0003684: damaged DNA binding	4.42E-03
25	GO:0003746: translation elongation factor activity	7.05E-03
26	GO:0000149: SNARE binding	7.49E-03
27	GO:0005484: SNAP receptor activity	8.41E-03
28	GO:0043621: protein self-association	8.88E-03

Rank	GO Term	Adjusted P value
1	GO:0010009: cytoplasmic side of endosome membrane	0.00E+00
2	GO:0031372: UBC13-MMS2 complex	1.51E-06
3	GO:0031901: early endosome membrane	1.78E-05
4	GO:0005775: vacuolar lumen	2.25E-04
5	GO:0005776: autophagosome	3.05E-04
6	GO:0032586: protein storage vacuole membrane	3.05E-04
7	GO:0000421: autophagosome membrane	7.68E-04
8	GO:0000326: protein storage vacuole	8.71E-04
9	GO:0005737: cytoplasm	1.96E-03
10	GO:0005769: early endosome	1.97E-03
11	GO:0045271: respiratory chain complex I	2.26E-03
12	GO:0005741: mitochondrial outer membrane	2.41E-03
13	GO:0031410: cytoplasmic vesicle	2.56E-03
14	GO:0005783: endoplasmic reticulum	2.75E-03
15	GO:0005768: endosome	2.99E-03
16	GO:0005774: vacuolar membrane	3.73E-03
17	GO:0000785: chromatin	4.06E-03
18	GO:0005778: peroxisomal membrane	4.60E-03
19	GO:0000151: ubiquitin ligase complex	5.99E-03
20	GO:0019005: SCF ubiquitin ligase complex	5.99E-03
21	GO:0005829: cytosol	6.05E-03
22	GO:0005773: vacuole	7.13E-03
23	GO:0005819: spindle	7.49E-03
24	GO:0031201: SNARE complex	7.95E-03
25	GO:0031966: mitochondrial membrane	9.86E-03
26	GO:0000502: proteasome complex	1.04E-02
27	GO:0005747: mitochondrial respiratory chain complex I	1.19E-02
28	GO:0016607: nuclear speck	1.19E-02
29	GO:0005794: Golgi apparatus	1.42E-02
30	GO:0009524: phragmoplast	1.62E-02
31	GO:0005789: endoplasmic reticulum membrane	2.99E-02
32	GO:0005874: microtubule	3.04E-02
33	GO:0043231: intracellular membrane-bounded organelle	4.41E-02