GO Enrichment Analysis of Co-expressed Genes with
AT4G39980
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0002191: cap-dependent translational initiation | 0.00E+00 |
| 2 | GO:0070478: nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay | 0.00E+00 |
| 3 | GO:0000478: endonucleolytic cleavage involved in rRNA processing | 0.00E+00 |
| 4 | GO:0043633: polyadenylation-dependent RNA catabolic process | 0.00E+00 |
| 5 | GO:0080056: petal vascular tissue pattern formation | 0.00E+00 |
| 6 | GO:0080057: sepal vascular tissue pattern formation | 0.00E+00 |
| 7 | GO:0006364: rRNA processing | 1.23E-06 |
| 8 | GO:0042273: ribosomal large subunit biogenesis | 1.51E-06 |
| 9 | GO:0019673: GDP-mannose metabolic process | 3.50E-05 |
| 10 | GO:0048453: sepal formation | 3.50E-05 |
| 11 | GO:1902466: positive regulation of histone H3-K27 trimethylation | 3.50E-05 |
| 12 | GO:0031060: regulation of histone methylation | 3.50E-05 |
| 13 | GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic | 3.50E-05 |
| 14 | GO:0006446: regulation of translational initiation | 5.08E-05 |
| 15 | GO:0060149: negative regulation of posttranscriptional gene silencing | 8.78E-05 |
| 16 | GO:0017006: protein-tetrapyrrole linkage | 1.52E-04 |
| 17 | GO:0042351: 'de novo' GDP-L-fucose biosynthetic process | 1.52E-04 |
| 18 | GO:0042780: tRNA 3'-end processing | 1.52E-04 |
| 19 | GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic | 1.52E-04 |
| 20 | GO:0010338: leaf formation | 1.52E-04 |
| 21 | GO:0010305: leaf vascular tissue pattern formation | 1.60E-04 |
| 22 | GO:0006413: translational initiation | 1.62E-04 |
| 23 | GO:0009584: detection of visible light | 2.25E-04 |
| 24 | GO:0010971: positive regulation of G2/M transition of mitotic cell cycle | 2.25E-04 |
| 25 | GO:0051781: positive regulation of cell division | 3.05E-04 |
| 26 | GO:0033320: UDP-D-xylose biosynthetic process | 3.05E-04 |
| 27 | GO:0006090: pyruvate metabolic process | 3.89E-04 |
| 28 | GO:0001731: formation of translation preinitiation complex | 4.78E-04 |
| 29 | GO:0006751: glutathione catabolic process | 4.78E-04 |
| 30 | GO:0016070: RNA metabolic process | 4.78E-04 |
| 31 | GO:0042732: D-xylose metabolic process | 4.78E-04 |
| 32 | GO:0010358: leaf shaping | 4.78E-04 |
| 33 | GO:0009094: L-phenylalanine biosynthetic process | 5.70E-04 |
| 34 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 5.70E-04 |
| 35 | GO:0006875: cellular metal ion homeostasis | 7.68E-04 |
| 36 | GO:0009585: red, far-red light phototransduction | 8.23E-04 |
| 37 | GO:0010093: specification of floral organ identity | 8.71E-04 |
| 38 | GO:0060321: acceptance of pollen | 8.71E-04 |
| 39 | GO:0001510: RNA methylation | 8.71E-04 |
| 40 | GO:0009051: pentose-phosphate shunt, oxidative branch | 9.78E-04 |
| 41 | GO:0010018: far-red light signaling pathway | 1.09E-03 |
| 42 | GO:0006415: translational termination | 1.32E-03 |
| 43 | GO:0006913: nucleocytoplasmic transport | 1.32E-03 |
| 44 | GO:0000266: mitochondrial fission | 1.44E-03 |
| 45 | GO:0006108: malate metabolic process | 1.57E-03 |
| 46 | GO:0010588: cotyledon vascular tissue pattern formation | 1.57E-03 |
| 47 | GO:0009933: meristem structural organization | 1.70E-03 |
| 48 | GO:0048440: carpel development | 1.70E-03 |
| 49 | GO:0009969: xyloglucan biosynthetic process | 1.84E-03 |
| 50 | GO:0009225: nucleotide-sugar metabolic process | 1.84E-03 |
| 51 | GO:0080188: RNA-directed DNA methylation | 1.84E-03 |
| 52 | GO:0042753: positive regulation of circadian rhythm | 1.97E-03 |
| 53 | GO:0051260: protein homooligomerization | 2.41E-03 |
| 54 | GO:0016226: iron-sulfur cluster assembly | 2.56E-03 |
| 55 | GO:0010017: red or far-red light signaling pathway | 2.56E-03 |
| 56 | GO:0010082: regulation of root meristem growth | 2.71E-03 |
| 57 | GO:0048443: stamen development | 2.87E-03 |
| 58 | GO:0000413: protein peptidyl-prolyl isomerization | 3.20E-03 |
| 59 | GO:0009639: response to red or far red light | 4.42E-03 |
| 60 | GO:0006886: intracellular protein transport | 4.55E-03 |
| 61 | GO:0001666: response to hypoxia | 4.99E-03 |
| 62 | GO:0006397: mRNA processing | 5.67E-03 |
| 63 | GO:0018298: protein-chromophore linkage | 5.99E-03 |
| 64 | GO:0006260: DNA replication | 9.61E-03 |
| 65 | GO:0009909: regulation of flower development | 1.11E-02 |
| 66 | GO:0006417: regulation of translation | 1.11E-02 |
| 67 | GO:0048367: shoot system development | 1.19E-02 |
| 68 | GO:0009553: embryo sac development | 1.30E-02 |
| 69 | GO:0018105: peptidyl-serine phosphorylation | 1.36E-02 |
| 70 | GO:0009790: embryo development | 1.74E-02 |
| 71 | GO:0040008: regulation of growth | 1.89E-02 |
| 72 | GO:0009451: RNA modification | 1.99E-02 |
| 73 | GO:0009826: unidimensional cell growth | 2.60E-02 |
| 74 | GO:0042254: ribosome biogenesis | 2.71E-02 |
| 75 | GO:0006810: transport | 2.88E-02 |
| 76 | GO:0048366: leaf development | 3.00E-02 |
| 77 | GO:0046777: protein autophosphorylation | 3.27E-02 |
| 78 | GO:0006869: lipid transport | 3.78E-02 |
| 79 | GO:0048364: root development | 4.24E-02 |
| 80 | GO:0009793: embryo development ending in seed dormancy | 4.52E-02 |
| 81 | GO:0009873: ethylene-activated signaling pathway | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0098808: mRNA cap binding | 0.00E+00 |
| 2 | GO:0016428: tRNA (cytosine-5-)-methyltransferase activity | 0.00E+00 |
| 3 | GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity | 0.00E+00 |
| 4 | GO:0008446: GDP-mannose 4,6-dehydratase activity | 3.50E-05 |
| 5 | GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters | 8.78E-05 |
| 6 | GO:0009883: red or far-red light photoreceptor activity | 8.78E-05 |
| 7 | GO:0004839: ubiquitin activating enzyme activity | 8.78E-05 |
| 8 | GO:0070181: small ribosomal subunit rRNA binding | 1.52E-04 |
| 9 | GO:0008020: G-protein coupled photoreceptor activity | 1.52E-04 |
| 10 | GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity | 1.52E-04 |
| 11 | GO:0042781: 3'-tRNA processing endoribonuclease activity | 1.52E-04 |
| 12 | GO:0003729: mRNA binding | 1.71E-04 |
| 13 | GO:0000166: nucleotide binding | 1.87E-04 |
| 14 | GO:0003723: RNA binding | 1.89E-04 |
| 15 | GO:0003743: translation initiation factor activity | 2.22E-04 |
| 16 | GO:0016149: translation release factor activity, codon specific | 2.25E-04 |
| 17 | GO:0003676: nucleic acid binding | 2.25E-04 |
| 18 | GO:0004470: malic enzyme activity | 3.05E-04 |
| 19 | GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor | 3.05E-04 |
| 20 | GO:0047769: arogenate dehydratase activity | 3.05E-04 |
| 21 | GO:0004737: pyruvate decarboxylase activity | 3.05E-04 |
| 22 | GO:0004664: prephenate dehydratase activity | 3.05E-04 |
| 23 | GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity | 3.05E-04 |
| 24 | GO:0008641: small protein activating enzyme activity | 3.89E-04 |
| 25 | GO:0008948: oxaloacetate decarboxylase activity | 3.89E-04 |
| 26 | GO:0030976: thiamine pyrophosphate binding | 4.78E-04 |
| 27 | GO:0048040: UDP-glucuronate decarboxylase activity | 4.78E-04 |
| 28 | GO:0070403: NAD+ binding | 5.70E-04 |
| 29 | GO:0030515: snoRNA binding | 6.66E-04 |
| 30 | GO:0008143: poly(A) binding | 6.66E-04 |
| 31 | GO:0016831: carboxy-lyase activity | 6.66E-04 |
| 32 | GO:0009881: photoreceptor activity | 6.66E-04 |
| 33 | GO:0043022: ribosome binding | 7.68E-04 |
| 34 | GO:0003724: RNA helicase activity | 8.71E-04 |
| 35 | GO:0003747: translation release factor activity | 9.78E-04 |
| 36 | GO:0000155: phosphorelay sensor kinase activity | 1.57E-03 |
| 37 | GO:0003887: DNA-directed DNA polymerase activity | 1.97E-03 |
| 38 | GO:0051536: iron-sulfur cluster binding | 2.12E-03 |
| 39 | GO:0008408: 3'-5' exonuclease activity | 2.41E-03 |
| 40 | GO:0004527: exonuclease activity | 3.36E-03 |
| 41 | GO:0030276: clathrin binding | 3.36E-03 |
| 42 | GO:0042803: protein homodimerization activity | 4.62E-03 |
| 43 | GO:0016597: amino acid binding | 4.80E-03 |
| 44 | GO:0009931: calcium-dependent protein serine/threonine kinase activity | 5.38E-03 |
| 45 | GO:0004004: ATP-dependent RNA helicase activity | 5.58E-03 |
| 46 | GO:0004683: calmodulin-dependent protein kinase activity | 5.58E-03 |
| 47 | GO:0008422: beta-glucosidase activity | 7.49E-03 |
| 48 | GO:0051539: 4 iron, 4 sulfur cluster binding | 7.72E-03 |
| 49 | GO:0042393: histone binding | 7.72E-03 |
| 50 | GO:0005198: structural molecule activity | 9.12E-03 |
| 51 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 9.36E-03 |
| 52 | GO:0051287: NAD binding | 9.61E-03 |
| 53 | GO:0015171: amino acid transmembrane transporter activity | 1.11E-02 |
| 54 | GO:0008026: ATP-dependent helicase activity | 1.38E-02 |
| 55 | GO:0005525: GTP binding | 1.59E-02 |
| 56 | GO:0005509: calcium ion binding | 1.81E-02 |
| 57 | GO:0003824: catalytic activity | 2.15E-02 |
| 58 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 2.32E-02 |
| 59 | GO:0042802: identical protein binding | 2.32E-02 |
| 60 | GO:0008168: methyltransferase activity | 2.60E-02 |
| 61 | GO:0000287: magnesium ion binding | 2.64E-02 |
| 62 | GO:0003682: chromatin binding | 2.78E-02 |
| 63 | GO:0005524: ATP binding | 3.38E-02 |
| 64 | GO:0004871: signal transducer activity | 3.66E-02 |
| 65 | GO:0003924: GTPase activity | 4.11E-02 |
| 66 | GO:0004519: endonuclease activity | 4.36E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0055087: Ski complex | 0.00E+00 |
| 2 | GO:0005850: eukaryotic translation initiation factor 2 complex | 0.00E+00 |
| 3 | GO:0005829: cytosol | 1.96E-06 |
| 4 | GO:0033290: eukaryotic 48S preinitiation complex | 5.84E-06 |
| 5 | GO:0030687: preribosome, large subunit precursor | 8.12E-06 |
| 6 | GO:0043614: multi-eIF complex | 3.50E-05 |
| 7 | GO:0032040: small-subunit processome | 3.77E-05 |
| 8 | GO:0000176: nuclear exosome (RNase complex) | 1.52E-04 |
| 9 | GO:0005730: nucleolus | 2.20E-04 |
| 10 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.64E-04 |
| 11 | GO:0016282: eukaryotic 43S preinitiation complex | 4.78E-04 |
| 12 | GO:0005851: eukaryotic translation initiation factor 2B complex | 4.78E-04 |
| 13 | GO:0034399: nuclear periphery | 7.68E-04 |
| 14 | GO:0005680: anaphase-promoting complex | 9.78E-04 |
| 15 | GO:0010494: cytoplasmic stress granule | 9.78E-04 |
| 16 | GO:0005634: nucleus | 1.76E-03 |
| 17 | GO:0005622: intracellular | 2.90E-03 |
| 18 | GO:0032580: Golgi cisterna membrane | 4.42E-03 |
| 19 | GO:0009506: plasmodesma | 8.40E-03 |
| 20 | GO:0016607: nuclear speck | 1.19E-02 |
| 21 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.41E-02 |
| 22 | GO:0005654: nucleoplasm | 1.53E-02 |
| 23 | GO:0005774: vacuolar membrane | 1.65E-02 |
| 24 | GO:0005618: cell wall | 1.96E-02 |
| 25 | GO:0046658: anchored component of plasma membrane | 2.39E-02 |
| 26 | GO:0022625: cytosolic large ribosomal subunit | 3.23E-02 |