GO Enrichment Analysis of Co-expressed Genes with
AT4G39900
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045176: apical protein localization | 0.00E+00 |
| 2 | GO:0006780: uroporphyrinogen III biosynthetic process | 0.00E+00 |
| 3 | GO:0033494: ferulate metabolic process | 0.00E+00 |
| 4 | GO:0006428: isoleucyl-tRNA aminoacylation | 0.00E+00 |
| 5 | GO:0070272: proton-transporting ATP synthase complex biogenesis | 0.00E+00 |
| 6 | GO:0042254: ribosome biogenesis | 3.21E-07 |
| 7 | GO:0006412: translation | 1.05E-06 |
| 8 | GO:0015976: carbon utilization | 1.55E-05 |
| 9 | GO:0000413: protein peptidyl-prolyl isomerization | 5.38E-05 |
| 10 | GO:0032544: plastid translation | 1.17E-04 |
| 11 | GO:0042371: vitamin K biosynthetic process | 1.37E-04 |
| 12 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.37E-04 |
| 13 | GO:0060627: regulation of vesicle-mediated transport | 1.37E-04 |
| 14 | GO:2000123: positive regulation of stomatal complex development | 3.16E-04 |
| 15 | GO:0006695: cholesterol biosynthetic process | 3.16E-04 |
| 16 | GO:0009658: chloroplast organization | 5.26E-04 |
| 17 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 7.44E-04 |
| 18 | GO:0042335: cuticle development | 8.93E-04 |
| 19 | GO:2000122: negative regulation of stomatal complex development | 9.85E-04 |
| 20 | GO:2000038: regulation of stomatal complex development | 9.85E-04 |
| 21 | GO:0010037: response to carbon dioxide | 9.85E-04 |
| 22 | GO:0051322: anaphase | 9.85E-04 |
| 23 | GO:0006869: lipid transport | 1.09E-03 |
| 24 | GO:0010375: stomatal complex patterning | 1.25E-03 |
| 25 | GO:0010190: cytochrome b6f complex assembly | 1.53E-03 |
| 26 | GO:0006014: D-ribose metabolic process | 1.53E-03 |
| 27 | GO:0048827: phyllome development | 1.53E-03 |
| 28 | GO:0042549: photosystem II stabilization | 1.53E-03 |
| 29 | GO:0010358: leaf shaping | 1.53E-03 |
| 30 | GO:0032973: amino acid export | 1.53E-03 |
| 31 | GO:0006633: fatty acid biosynthetic process | 1.60E-03 |
| 32 | GO:0042372: phylloquinone biosynthetic process | 1.83E-03 |
| 33 | GO:0009612: response to mechanical stimulus | 1.83E-03 |
| 34 | GO:0010019: chloroplast-nucleus signaling pathway | 1.83E-03 |
| 35 | GO:0010555: response to mannitol | 1.83E-03 |
| 36 | GO:0010411: xyloglucan metabolic process | 1.97E-03 |
| 37 | GO:0009645: response to low light intensity stimulus | 2.15E-03 |
| 38 | GO:0048528: post-embryonic root development | 2.15E-03 |
| 39 | GO:0043090: amino acid import | 2.15E-03 |
| 40 | GO:0042742: defense response to bacterium | 2.30E-03 |
| 41 | GO:0009642: response to light intensity | 2.49E-03 |
| 42 | GO:0009932: cell tip growth | 2.85E-03 |
| 43 | GO:0009657: plastid organization | 2.85E-03 |
| 44 | GO:0010206: photosystem II repair | 3.22E-03 |
| 45 | GO:0080144: amino acid homeostasis | 3.22E-03 |
| 46 | GO:0033384: geranyl diphosphate biosynthetic process | 3.22E-03 |
| 47 | GO:0045337: farnesyl diphosphate biosynthetic process | 3.22E-03 |
| 48 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.60E-03 |
| 49 | GO:0042546: cell wall biogenesis | 3.68E-03 |
| 50 | GO:0009409: response to cold | 3.91E-03 |
| 51 | GO:0009870: defense response signaling pathway, resistance gene-dependent | 4.00E-03 |
| 52 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.00E-03 |
| 53 | GO:0019684: photosynthesis, light reaction | 4.42E-03 |
| 54 | GO:0009089: lysine biosynthetic process via diaminopimelate | 4.42E-03 |
| 55 | GO:0000038: very long-chain fatty acid metabolic process | 4.42E-03 |
| 56 | GO:0009773: photosynthetic electron transport in photosystem I | 4.42E-03 |
| 57 | GO:0006415: translational termination | 4.42E-03 |
| 58 | GO:0042538: hyperosmotic salinity response | 4.43E-03 |
| 59 | GO:0045037: protein import into chloroplast stroma | 4.85E-03 |
| 60 | GO:0006006: glucose metabolic process | 5.30E-03 |
| 61 | GO:0010229: inflorescence development | 5.30E-03 |
| 62 | GO:0010207: photosystem II assembly | 5.76E-03 |
| 63 | GO:0010540: basipetal auxin transport | 5.76E-03 |
| 64 | GO:0010143: cutin biosynthetic process | 5.76E-03 |
| 65 | GO:0010020: chloroplast fission | 5.76E-03 |
| 66 | GO:0019253: reductive pentose-phosphate cycle | 5.76E-03 |
| 67 | GO:0006636: unsaturated fatty acid biosynthetic process | 6.71E-03 |
| 68 | GO:0006833: water transport | 6.71E-03 |
| 69 | GO:0019344: cysteine biosynthetic process | 7.22E-03 |
| 70 | GO:0000027: ribosomal large subunit assembly | 7.22E-03 |
| 71 | GO:0006418: tRNA aminoacylation for protein translation | 7.73E-03 |
| 72 | GO:0061077: chaperone-mediated protein folding | 8.26E-03 |
| 73 | GO:0019748: secondary metabolic process | 8.79E-03 |
| 74 | GO:0009790: embryo development | 9.88E-03 |
| 75 | GO:0006284: base-excision repair | 9.92E-03 |
| 76 | GO:0034220: ion transmembrane transport | 1.11E-02 |
| 77 | GO:0000226: microtubule cytoskeleton organization | 1.11E-02 |
| 78 | GO:0048868: pollen tube development | 1.17E-02 |
| 79 | GO:0009741: response to brassinosteroid | 1.17E-02 |
| 80 | GO:0010268: brassinosteroid homeostasis | 1.17E-02 |
| 81 | GO:0009735: response to cytokinin | 1.25E-02 |
| 82 | GO:0048825: cotyledon development | 1.29E-02 |
| 83 | GO:0019252: starch biosynthetic process | 1.29E-02 |
| 84 | GO:0000302: response to reactive oxygen species | 1.36E-02 |
| 85 | GO:0016132: brassinosteroid biosynthetic process | 1.36E-02 |
| 86 | GO:0071554: cell wall organization or biogenesis | 1.36E-02 |
| 87 | GO:0009416: response to light stimulus | 1.40E-02 |
| 88 | GO:0010583: response to cyclopentenone | 1.42E-02 |
| 89 | GO:0016125: sterol metabolic process | 1.55E-02 |
| 90 | GO:0006810: transport | 1.62E-02 |
| 91 | GO:0007267: cell-cell signaling | 1.62E-02 |
| 92 | GO:0000910: cytokinesis | 1.69E-02 |
| 93 | GO:0009826: unidimensional cell growth | 1.75E-02 |
| 94 | GO:0010027: thylakoid membrane organization | 1.76E-02 |
| 95 | GO:0009911: positive regulation of flower development | 1.76E-02 |
| 96 | GO:0006457: protein folding | 1.94E-02 |
| 97 | GO:0015995: chlorophyll biosynthetic process | 1.98E-02 |
| 98 | GO:0048481: plant ovule development | 2.12E-02 |
| 99 | GO:0048366: leaf development | 2.14E-02 |
| 100 | GO:0000160: phosphorelay signal transduction system | 2.20E-02 |
| 101 | GO:0006811: ion transport | 2.28E-02 |
| 102 | GO:0010119: regulation of stomatal movement | 2.36E-02 |
| 103 | GO:0009631: cold acclimation | 2.36E-02 |
| 104 | GO:0009867: jasmonic acid mediated signaling pathway | 2.51E-02 |
| 105 | GO:0016051: carbohydrate biosynthetic process | 2.51E-02 |
| 106 | GO:0015979: photosynthesis | 2.57E-02 |
| 107 | GO:0034599: cellular response to oxidative stress | 2.60E-02 |
| 108 | GO:0045454: cell redox homeostasis | 2.70E-02 |
| 109 | GO:0008283: cell proliferation | 3.01E-02 |
| 110 | GO:0071555: cell wall organization | 3.39E-02 |
| 111 | GO:0009736: cytokinin-activated signaling pathway | 3.72E-02 |
| 112 | GO:0006813: potassium ion transport | 3.72E-02 |
| 113 | GO:0006096: glycolytic process | 4.19E-02 |
| 114 | GO:0006396: RNA processing | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:0004852: uroporphyrinogen-III synthase activity | 0.00E+00 |
| 4 | GO:0004822: isoleucine-tRNA ligase activity | 0.00E+00 |
| 5 | GO:0019843: rRNA binding | 6.04E-10 |
| 6 | GO:0003735: structural constituent of ribosome | 4.69E-08 |
| 7 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.05E-05 |
| 8 | GO:0051920: peroxiredoxin activity | 5.36E-05 |
| 9 | GO:0016209: antioxidant activity | 9.31E-05 |
| 10 | GO:0010012: steroid 22-alpha hydroxylase activity | 1.37E-04 |
| 11 | GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | 1.37E-04 |
| 12 | GO:0004089: carbonate dehydratase activity | 3.14E-04 |
| 13 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 3.16E-04 |
| 14 | GO:0042389: omega-3 fatty acid desaturase activity | 3.16E-04 |
| 15 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.16E-04 |
| 16 | GO:0008289: lipid binding | 4.35E-04 |
| 17 | GO:0030267: glyoxylate reductase (NADP) activity | 5.20E-04 |
| 18 | GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | 5.20E-04 |
| 19 | GO:0050734: hydroxycinnamoyltransferase activity | 5.20E-04 |
| 20 | GO:0002161: aminoacyl-tRNA editing activity | 5.20E-04 |
| 21 | GO:0016149: translation release factor activity, codon specific | 7.44E-04 |
| 22 | GO:0008097: 5S rRNA binding | 7.44E-04 |
| 23 | GO:0001872: (1->3)-beta-D-glucan binding | 7.44E-04 |
| 24 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.17E-03 |
| 25 | GO:0008725: DNA-3-methyladenine glycosylase activity | 1.25E-03 |
| 26 | GO:0009922: fatty acid elongase activity | 1.25E-03 |
| 27 | GO:0004040: amidase activity | 1.25E-03 |
| 28 | GO:0016208: AMP binding | 1.53E-03 |
| 29 | GO:0016688: L-ascorbate peroxidase activity | 1.53E-03 |
| 30 | GO:0004130: cytochrome-c peroxidase activity | 1.53E-03 |
| 31 | GO:0051753: mannan synthase activity | 1.83E-03 |
| 32 | GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity | 1.83E-03 |
| 33 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.83E-03 |
| 34 | GO:0004747: ribokinase activity | 1.83E-03 |
| 35 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 1.97E-03 |
| 36 | GO:0008865: fructokinase activity | 2.49E-03 |
| 37 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.85E-03 |
| 38 | GO:0003747: translation release factor activity | 3.22E-03 |
| 39 | GO:0004337: geranyltranstransferase activity | 3.22E-03 |
| 40 | GO:0004161: dimethylallyltranstransferase activity | 4.42E-03 |
| 41 | GO:0000049: tRNA binding | 4.85E-03 |
| 42 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 6.71E-03 |
| 43 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 6.71E-03 |
| 44 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 6.71E-03 |
| 45 | GO:0005528: FK506 binding | 7.22E-03 |
| 46 | GO:0008324: cation transmembrane transporter activity | 7.73E-03 |
| 47 | GO:0004812: aminoacyl-tRNA ligase activity | 1.05E-02 |
| 48 | GO:0008080: N-acetyltransferase activity | 1.17E-02 |
| 49 | GO:0008017: microtubule binding | 1.22E-02 |
| 50 | GO:0019901: protein kinase binding | 1.29E-02 |
| 51 | GO:0000156: phosphorelay response regulator activity | 1.49E-02 |
| 52 | GO:0042802: identical protein binding | 1.49E-02 |
| 53 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.62E-02 |
| 54 | GO:0016413: O-acetyltransferase activity | 1.69E-02 |
| 55 | GO:0015250: water channel activity | 1.76E-02 |
| 56 | GO:0004601: peroxidase activity | 1.82E-02 |
| 57 | GO:0030247: polysaccharide binding | 1.98E-02 |
| 58 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 1.99E-02 |
| 59 | GO:0008236: serine-type peptidase activity | 2.05E-02 |
| 60 | GO:0030145: manganese ion binding | 2.36E-02 |
| 61 | GO:0052689: carboxylic ester hydrolase activity | 2.49E-02 |
| 62 | GO:0050661: NADP binding | 2.76E-02 |
| 63 | GO:0004871: signal transducer activity | 2.83E-02 |
| 64 | GO:0004185: serine-type carboxypeptidase activity | 3.01E-02 |
| 65 | GO:0005509: calcium ion binding | 3.07E-02 |
| 66 | GO:0051537: 2 iron, 2 sulfur cluster binding | 3.19E-02 |
| 67 | GO:0005198: structural molecule activity | 3.27E-02 |
| 68 | GO:0003924: GTPase activity | 3.32E-02 |
| 69 | GO:0051287: NAD binding | 3.45E-02 |
| 70 | GO:0009055: electron carrier activity | 3.56E-02 |
| 71 | GO:0003777: microtubule motor activity | 4.00E-02 |
| 72 | GO:0015171: amino acid transmembrane transporter activity | 4.00E-02 |
| 73 | GO:0045735: nutrient reservoir activity | 4.19E-02 |
| 74 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 4.29E-02 |
| 75 | GO:0004650: polygalacturonase activity | 4.49E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0044391: ribosomal subunit | 0.00E+00 |
| 2 | GO:0009570: chloroplast stroma | 5.11E-18 |
| 3 | GO:0009507: chloroplast | 6.80E-18 |
| 4 | GO:0009941: chloroplast envelope | 8.55E-13 |
| 5 | GO:0031977: thylakoid lumen | 1.03E-11 |
| 6 | GO:0009543: chloroplast thylakoid lumen | 6.04E-10 |
| 7 | GO:0009579: thylakoid | 9.24E-10 |
| 8 | GO:0009535: chloroplast thylakoid membrane | 8.67E-09 |
| 9 | GO:0005840: ribosome | 1.84E-08 |
| 10 | GO:0048046: apoplast | 1.13E-06 |
| 11 | GO:0046658: anchored component of plasma membrane | 3.40E-06 |
| 12 | GO:0031225: anchored component of membrane | 5.72E-05 |
| 13 | GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex | 1.37E-04 |
| 14 | GO:0009534: chloroplast thylakoid | 1.89E-04 |
| 15 | GO:0000311: plastid large ribosomal subunit | 2.75E-04 |
| 16 | GO:0042170: plastid membrane | 3.16E-04 |
| 17 | GO:0030095: chloroplast photosystem II | 3.55E-04 |
| 18 | GO:0009654: photosystem II oxygen evolving complex | 5.43E-04 |
| 19 | GO:0019898: extrinsic component of membrane | 1.10E-03 |
| 20 | GO:0072686: mitotic spindle | 1.25E-03 |
| 21 | GO:0010319: stromule | 1.50E-03 |
| 22 | GO:0005819: spindle | 3.00E-03 |
| 23 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.22E-03 |
| 24 | GO:0000922: spindle pole | 3.22E-03 |
| 25 | GO:0009505: plant-type cell wall | 3.42E-03 |
| 26 | GO:0005874: microtubule | 3.94E-03 |
| 27 | GO:0055028: cortical microtubule | 4.00E-03 |
| 28 | GO:0009574: preprophase band | 5.30E-03 |
| 29 | GO:0031012: extracellular matrix | 5.30E-03 |
| 30 | GO:0005875: microtubule associated complex | 6.71E-03 |
| 31 | GO:0009706: chloroplast inner membrane | 6.76E-03 |
| 32 | GO:0042651: thylakoid membrane | 7.73E-03 |
| 33 | GO:0015935: small ribosomal subunit | 8.26E-03 |
| 34 | GO:0009532: plastid stroma | 8.26E-03 |
| 35 | GO:0016020: membrane | 1.10E-02 |
| 36 | GO:0005770: late endosome | 1.17E-02 |
| 37 | GO:0005778: peroxisomal membrane | 1.62E-02 |
| 38 | GO:0015934: large ribosomal subunit | 2.36E-02 |
| 39 | GO:0005618: cell wall | 2.50E-02 |
| 40 | GO:0005886: plasma membrane | 2.63E-02 |
| 41 | GO:0009506: plasmodesma | 3.52E-02 |
| 42 | GO:0005576: extracellular region | 4.08E-02 |