Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G39830

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042430: indole-containing compound metabolic process0.00E+00
2GO:0006793: phosphorus metabolic process0.00E+00
3GO:0051238: sequestering of metal ion0.00E+00
4GO:0046865: terpenoid transport0.00E+00
5GO:0006182: cGMP biosynthetic process0.00E+00
6GO:0072722: response to amitrole0.00E+00
7GO:0072660: maintenance of protein location in plasma membrane0.00E+00
8GO:0080169: cellular response to boron-containing substance deprivation0.00E+00
9GO:0006468: protein phosphorylation5.82E-09
10GO:0009617: response to bacterium9.99E-09
11GO:0071456: cellular response to hypoxia5.64E-07
12GO:0042742: defense response to bacterium6.74E-07
13GO:0009737: response to abscisic acid7.13E-06
14GO:0009627: systemic acquired resistance1.09E-05
15GO:0055114: oxidation-reduction process2.01E-05
16GO:0006032: chitin catabolic process5.33E-05
17GO:0010193: response to ozone6.16E-05
18GO:0000304: response to singlet oxygen1.46E-04
19GO:0009620: response to fungus1.73E-04
20GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response2.83E-04
21GO:0010421: hydrogen peroxide-mediated programmed cell death3.97E-04
22GO:0033306: phytol metabolic process3.97E-04
23GO:0032491: detection of molecule of fungal origin3.97E-04
24GO:0010230: alternative respiration3.97E-04
25GO:0051775: response to redox state3.97E-04
26GO:0034975: protein folding in endoplasmic reticulum3.97E-04
27GO:0015760: glucose-6-phosphate transport3.97E-04
28GO:0051245: negative regulation of cellular defense response3.97E-04
29GO:0099132: ATP hydrolysis coupled cation transmembrane transport3.97E-04
30GO:0006979: response to oxidative stress4.30E-04
31GO:0051707: response to other organism4.41E-04
32GO:0010120: camalexin biosynthetic process5.59E-04
33GO:0010204: defense response signaling pathway, resistance gene-independent5.59E-04
34GO:0009699: phenylpropanoid biosynthetic process5.59E-04
35GO:0010150: leaf senescence5.79E-04
36GO:0007166: cell surface receptor signaling pathway7.35E-04
37GO:0002240: response to molecule of oomycetes origin8.60E-04
38GO:0044419: interspecies interaction between organisms8.60E-04
39GO:0031349: positive regulation of defense response8.60E-04
40GO:0015712: hexose phosphate transport8.60E-04
41GO:0060919: auxin influx8.60E-04
42GO:0002221: pattern recognition receptor signaling pathway8.60E-04
43GO:0051592: response to calcium ion8.60E-04
44GO:0080151: positive regulation of salicylic acid mediated signaling pathway8.60E-04
45GO:0009805: coumarin biosynthetic process8.60E-04
46GO:0048569: post-embryonic animal organ development8.60E-04
47GO:0090057: root radial pattern formation8.60E-04
48GO:0009866: induced systemic resistance, ethylene mediated signaling pathway8.60E-04
49GO:0010163: high-affinity potassium ion import8.60E-04
50GO:0009751: response to salicylic acid9.21E-04
51GO:0009626: plant-type hypersensitive response9.92E-04
52GO:0000272: polysaccharide catabolic process1.06E-03
53GO:0009624: response to nematode1.19E-03
54GO:0006952: defense response1.23E-03
55GO:0071367: cellular response to brassinosteroid stimulus1.40E-03
56GO:1900140: regulation of seedling development1.40E-03
57GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway1.40E-03
58GO:0035436: triose phosphate transmembrane transport1.40E-03
59GO:0010351: lithium ion transport1.40E-03
60GO:0072661: protein targeting to plasma membrane1.40E-03
61GO:0010476: gibberellin mediated signaling pathway1.40E-03
62GO:0010325: raffinose family oligosaccharide biosynthetic process1.40E-03
63GO:0010272: response to silver ion1.40E-03
64GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway1.40E-03
65GO:0015692: lead ion transport1.40E-03
66GO:0015714: phosphoenolpyruvate transport1.40E-03
67GO:0080168: abscisic acid transport1.40E-03
68GO:0002237: response to molecule of bacterial origin1.54E-03
69GO:0009407: toxin catabolic process1.66E-03
70GO:0070588: calcium ion transmembrane transport1.73E-03
71GO:0080167: response to karrikin1.82E-03
72GO:0010200: response to chitin1.93E-03
73GO:0006612: protein targeting to membrane2.02E-03
74GO:0010104: regulation of ethylene-activated signaling pathway2.02E-03
75GO:0010148: transpiration2.02E-03
76GO:0006882: cellular zinc ion homeostasis2.02E-03
77GO:0001676: long-chain fatty acid metabolic process2.02E-03
78GO:0046836: glycolipid transport2.02E-03
79GO:0010116: positive regulation of abscisic acid biosynthetic process2.02E-03
80GO:0019438: aromatic compound biosynthetic process2.02E-03
81GO:0006099: tricarboxylic acid cycle2.09E-03
82GO:0006874: cellular calcium ion homeostasis2.36E-03
83GO:0016998: cell wall macromolecule catabolic process2.60E-03
84GO:0042542: response to hydrogen peroxide2.60E-03
85GO:0080142: regulation of salicylic acid biosynthetic process2.71E-03
86GO:0015713: phosphoglycerate transport2.71E-03
87GO:0010109: regulation of photosynthesis2.71E-03
88GO:0060548: negative regulation of cell death2.71E-03
89GO:0009939: positive regulation of gibberellic acid mediated signaling pathway2.71E-03
90GO:0006536: glutamate metabolic process2.71E-03
91GO:0010363: regulation of plant-type hypersensitive response2.71E-03
92GO:0009744: response to sucrose2.73E-03
93GO:0050832: defense response to fungus2.79E-03
94GO:0031348: negative regulation of defense response2.84E-03
95GO:0009636: response to toxic substance3.17E-03
96GO:0006855: drug transmembrane transport3.33E-03
97GO:0034052: positive regulation of plant-type hypersensitive response3.47E-03
98GO:0045487: gibberellin catabolic process3.47E-03
99GO:0009697: salicylic acid biosynthetic process3.47E-03
100GO:0046686: response to cadmium ion3.80E-03
101GO:0010154: fruit development4.26E-03
102GO:0010315: auxin efflux4.29E-03
103GO:0002238: response to molecule of fungal origin4.29E-03
104GO:0009643: photosynthetic acclimation4.29E-03
105GO:0006561: proline biosynthetic process4.29E-03
106GO:0015691: cadmium ion transport4.29E-03
107GO:0060918: auxin transport4.29E-03
108GO:0048544: recognition of pollen4.58E-03
109GO:0061025: membrane fusion4.58E-03
110GO:0009749: response to glucose4.91E-03
111GO:0006096: glycolytic process4.95E-03
112GO:0000911: cytokinesis by cell plate formation5.17E-03
113GO:0009612: response to mechanical stimulus5.17E-03
114GO:0009094: L-phenylalanine biosynthetic process5.17E-03
115GO:0048444: floral organ morphogenesis5.17E-03
116GO:0010555: response to mannitol5.17E-03
117GO:2000067: regulation of root morphogenesis5.17E-03
118GO:0071470: cellular response to osmotic stress5.17E-03
119GO:0000302: response to reactive oxygen species5.26E-03
120GO:0002229: defense response to oomycetes5.26E-03
121GO:0030026: cellular manganese ion homeostasis6.11E-03
122GO:0050829: defense response to Gram-negative bacterium6.11E-03
123GO:1902074: response to salt6.11E-03
124GO:0043090: amino acid import6.11E-03
125GO:1900056: negative regulation of leaf senescence6.11E-03
126GO:0009787: regulation of abscisic acid-activated signaling pathway7.10E-03
127GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline7.10E-03
128GO:0009819: drought recovery7.10E-03
129GO:2000070: regulation of response to water deprivation7.10E-03
130GO:0048658: anther wall tapetum development7.10E-03
131GO:0031540: regulation of anthocyanin biosynthetic process7.10E-03
132GO:0006102: isocitrate metabolic process7.10E-03
133GO:0010928: regulation of auxin mediated signaling pathway7.10E-03
134GO:0030091: protein repair7.10E-03
135GO:0009615: response to virus7.61E-03
136GO:0009816: defense response to bacterium, incompatible interaction8.06E-03
137GO:0007186: G-protein coupled receptor signaling pathway8.15E-03
138GO:0010262: somatic embryogenesis8.15E-03
139GO:0010497: plasmodesmata-mediated intercellular transport8.15E-03
140GO:0043562: cellular response to nitrogen levels8.15E-03
141GO:0022900: electron transport chain8.15E-03
142GO:0001558: regulation of cell growth8.15E-03
143GO:0080144: amino acid homeostasis9.25E-03
144GO:0034765: regulation of ion transmembrane transport9.25E-03
145GO:0019432: triglyceride biosynthetic process9.25E-03
146GO:0010112: regulation of systemic acquired resistance9.25E-03
147GO:0009056: catabolic process9.25E-03
148GO:0009651: response to salt stress9.49E-03
149GO:0045454: cell redox homeostasis9.76E-03
150GO:0009817: defense response to fungus, incompatible interaction9.96E-03
151GO:0008219: cell death9.96E-03
152GO:2000280: regulation of root development1.04E-02
153GO:0007064: mitotic sister chromatid cohesion1.16E-02
154GO:0009870: defense response signaling pathway, resistance gene-dependent1.16E-02
155GO:0009688: abscisic acid biosynthetic process1.16E-02
156GO:0043069: negative regulation of programmed cell death1.16E-02
157GO:0055062: phosphate ion homeostasis1.16E-02
158GO:0010162: seed dormancy process1.16E-02
159GO:0009682: induced systemic resistance1.29E-02
160GO:0009750: response to fructose1.29E-02
161GO:0009807: lignan biosynthetic process1.29E-02
162GO:0006816: calcium ion transport1.29E-02
163GO:0015706: nitrate transport1.42E-02
164GO:0002213: defense response to insect1.42E-02
165GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.42E-02
166GO:0006790: sulfur compound metabolic process1.42E-02
167GO:0006006: glucose metabolic process1.55E-02
168GO:0006807: nitrogen compound metabolic process1.55E-02
169GO:2000028: regulation of photoperiodism, flowering1.55E-02
170GO:0055046: microgametogenesis1.55E-02
171GO:0009718: anthocyanin-containing compound biosynthetic process1.55E-02
172GO:0006094: gluconeogenesis1.55E-02
173GO:0010540: basipetal auxin transport1.69E-02
174GO:0046688: response to copper ion1.83E-02
175GO:0010167: response to nitrate1.83E-02
176GO:0046854: phosphatidylinositol phosphorylation1.83E-02
177GO:0042343: indole glucosinolate metabolic process1.83E-02
178GO:0031347: regulation of defense response1.98E-02
179GO:0009409: response to cold2.10E-02
180GO:0080147: root hair cell development2.13E-02
181GO:0000027: ribosomal large subunit assembly2.13E-02
182GO:0009863: salicylic acid mediated signaling pathway2.13E-02
183GO:2000377: regulation of reactive oxygen species metabolic process2.13E-02
184GO:0005992: trehalose biosynthetic process2.13E-02
185GO:0010224: response to UV-B2.29E-02
186GO:0006825: copper ion transport2.29E-02
187GO:0051302: regulation of cell division2.29E-02
188GO:0048278: vesicle docking2.44E-02
189GO:0098542: defense response to other organism2.44E-02
190GO:0010431: seed maturation2.44E-02
191GO:0019748: secondary metabolic process2.61E-02
192GO:0009814: defense response, incompatible interaction2.61E-02
193GO:0071215: cellular response to abscisic acid stimulus2.77E-02
194GO:0009686: gibberellin biosynthetic process2.77E-02
195GO:0071369: cellular response to ethylene stimulus2.77E-02
196GO:0009625: response to insect2.77E-02
197GO:0010227: floral organ abscission2.77E-02
198GO:0006012: galactose metabolic process2.77E-02
199GO:0009561: megagametogenesis2.94E-02
200GO:0042147: retrograde transport, endosome to Golgi3.12E-02
201GO:0044550: secondary metabolite biosynthetic process3.19E-02
202GO:0080022: primary root development3.29E-02
203GO:0042391: regulation of membrane potential3.29E-02
204GO:0042631: cellular response to water deprivation3.29E-02
205GO:0009958: positive gravitropism3.48E-02
206GO:0006814: sodium ion transport3.66E-02
207GO:0009646: response to absence of light3.66E-02
208GO:0010183: pollen tube guidance3.85E-02
209GO:0006891: intra-Golgi vesicle-mediated transport4.04E-02
210GO:0032502: developmental process4.23E-02
211GO:0009630: gravitropism4.23E-02
212GO:0032259: methylation4.41E-02
213GO:0030163: protein catabolic process4.43E-02
214GO:0009639: response to red or far red light4.63E-02
215GO:0006464: cellular protein modification process4.63E-02
216GO:0009408: response to heat4.65E-02
RankGO TermAdjusted P value
1GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
2GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
3GO:0008843: endochitinase activity0.00E+00
4GO:0035885: exochitinase activity0.00E+00
5GO:0050269: coniferyl-aldehyde dehydrogenase activity0.00E+00
6GO:0004674: protein serine/threonine kinase activity9.11E-08
7GO:0005524: ATP binding4.82E-07
8GO:0016301: kinase activity1.44E-06
9GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity5.35E-05
10GO:0050660: flavin adenine dinucleotide binding6.77E-05
11GO:0005388: calcium-transporting ATPase activity1.02E-04
12GO:0008061: chitin binding1.45E-04
13GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.51E-04
14GO:0050661: NADP binding3.62E-04
15GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.97E-04
16GO:0051287: NAD binding5.94E-04
17GO:0004775: succinate-CoA ligase (ADP-forming) activity8.60E-04
18GO:0015036: disulfide oxidoreductase activity8.60E-04
19GO:0004776: succinate-CoA ligase (GDP-forming) activity8.60E-04
20GO:0004634: phosphopyruvate hydratase activity8.60E-04
21GO:0010331: gibberellin binding8.60E-04
22GO:0045543: gibberellin 2-beta-dioxygenase activity8.60E-04
23GO:0015152: glucose-6-phosphate transmembrane transporter activity8.60E-04
24GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity8.60E-04
25GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity8.60E-04
26GO:0004568: chitinase activity9.20E-04
27GO:0008171: O-methyltransferase activity9.20E-04
28GO:0005509: calcium ion binding1.09E-03
29GO:0009055: electron carrier activity1.09E-03
30GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity1.40E-03
31GO:0004148: dihydrolipoyl dehydrogenase activity1.40E-03
32GO:0031683: G-protein beta/gamma-subunit complex binding1.40E-03
33GO:0004383: guanylate cyclase activity1.40E-03
34GO:0071917: triose-phosphate transmembrane transporter activity1.40E-03
35GO:0001664: G-protein coupled receptor binding1.40E-03
36GO:0016531: copper chaperone activity1.40E-03
37GO:0030145: manganese ion binding1.76E-03
38GO:0005507: copper ion binding1.85E-03
39GO:0004449: isocitrate dehydrogenase (NAD+) activity2.02E-03
40GO:0004351: glutamate decarboxylase activity2.02E-03
41GO:0017089: glycolipid transporter activity2.02E-03
42GO:0008276: protein methyltransferase activity2.02E-03
43GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity2.02E-03
44GO:0035529: NADH pyrophosphatase activity2.02E-03
45GO:0005516: calmodulin binding2.09E-03
46GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.47E-03
47GO:0004364: glutathione transferase activity2.60E-03
48GO:0043495: protein anchor2.71E-03
49GO:0009916: alternative oxidase activity2.71E-03
50GO:0015120: phosphoglycerate transmembrane transporter activity2.71E-03
51GO:0015368: calcium:cation antiporter activity2.71E-03
52GO:0047769: arogenate dehydratase activity2.71E-03
53GO:0004664: prephenate dehydratase activity2.71E-03
54GO:0051861: glycolipid binding2.71E-03
55GO:0015369: calcium:proton antiporter activity2.71E-03
56GO:0010328: auxin influx transmembrane transporter activity2.71E-03
57GO:0004499: N,N-dimethylaniline monooxygenase activity3.37E-03
58GO:0047631: ADP-ribose diphosphatase activity3.47E-03
59GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity3.47E-03
60GO:0045431: flavonol synthase activity3.47E-03
61GO:0000210: NAD+ diphosphatase activity4.29E-03
62GO:0004029: aldehyde dehydrogenase (NAD) activity4.29E-03
63GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity4.29E-03
64GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity4.29E-03
65GO:0004866: endopeptidase inhibitor activity4.29E-03
66GO:0045735: nutrient reservoir activity4.95E-03
67GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.17E-03
68GO:0102391: decanoate--CoA ligase activity5.17E-03
69GO:0004144: diacylglycerol O-acyltransferase activity5.17E-03
70GO:0004656: procollagen-proline 4-dioxygenase activity5.17E-03
71GO:0003978: UDP-glucose 4-epimerase activity5.17E-03
72GO:0008113: peptide-methionine (S)-S-oxide reductase activity5.17E-03
73GO:0005242: inward rectifier potassium channel activity5.17E-03
74GO:0051920: peroxiredoxin activity5.17E-03
75GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.17E-03
76GO:0030246: carbohydrate binding5.30E-03
77GO:0004467: long-chain fatty acid-CoA ligase activity6.11E-03
78GO:0015035: protein disulfide oxidoreductase activity6.51E-03
79GO:0015491: cation:cation antiporter activity7.10E-03
80GO:0004714: transmembrane receptor protein tyrosine kinase activity7.10E-03
81GO:0016209: antioxidant activity7.10E-03
82GO:0030247: polysaccharide binding8.98E-03
83GO:0004683: calmodulin-dependent protein kinase activity8.98E-03
84GO:0004672: protein kinase activity9.17E-03
85GO:0008757: S-adenosylmethionine-dependent methyltransferase activity9.46E-03
86GO:0015112: nitrate transmembrane transporter activity1.04E-02
87GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.04E-02
88GO:0015238: drug transmembrane transporter activity1.05E-02
89GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.10E-02
90GO:0015020: glucuronosyltransferase activity1.16E-02
91GO:0015297: antiporter activity1.19E-02
92GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.27E-02
93GO:0004129: cytochrome-c oxidase activity1.29E-02
94GO:0008794: arsenate reductase (glutaredoxin) activity1.29E-02
95GO:0008559: xenobiotic-transporting ATPase activity1.29E-02
96GO:0004022: alcohol dehydrogenase (NAD) activity1.55E-02
97GO:0010329: auxin efflux transmembrane transporter activity1.55E-02
98GO:0005315: inorganic phosphate transmembrane transporter activity1.55E-02
99GO:0005262: calcium channel activity1.55E-02
100GO:0005484: SNAP receptor activity1.64E-02
101GO:0003712: transcription cofactor activity1.83E-02
102GO:0004970: ionotropic glutamate receptor activity1.83E-02
103GO:0005217: intracellular ligand-gated ion channel activity1.83E-02
104GO:0004190: aspartic-type endopeptidase activity1.83E-02
105GO:0004867: serine-type endopeptidase inhibitor activity1.83E-02
106GO:0016491: oxidoreductase activity1.99E-02
107GO:0016298: lipase activity2.29E-02
108GO:0004298: threonine-type endopeptidase activity2.44E-02
109GO:0033612: receptor serine/threonine kinase binding2.44E-02
110GO:0046872: metal ion binding2.64E-02
111GO:0004497: monooxygenase activity2.87E-02
112GO:0003756: protein disulfide isomerase activity2.94E-02
113GO:0030551: cyclic nucleotide binding3.29E-02
114GO:0005249: voltage-gated potassium channel activity3.29E-02
115GO:0030170: pyridoxal phosphate binding4.36E-02
116GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.43E-02
117GO:0008237: metallopeptidase activity4.83E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane8.37E-09
2GO:0048046: apoplast2.72E-05
3GO:0016021: integral component of membrane4.42E-05
4GO:0005901: caveola8.60E-04
5GO:0000015: phosphopyruvate hydratase complex8.60E-04
6GO:0031314: extrinsic component of mitochondrial inner membrane8.60E-04
7GO:0005740: mitochondrial envelope9.20E-04
8GO:0005618: cell wall2.53E-03
9GO:0005783: endoplasmic reticulum2.62E-03
10GO:0030660: Golgi-associated vesicle membrane2.71E-03
11GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane2.71E-03
12GO:0005746: mitochondrial respiratory chain3.47E-03
13GO:0005576: extracellular region4.29E-03
14GO:0009504: cell plate4.91E-03
15GO:0031225: anchored component of membrane7.08E-03
16GO:0045273: respiratory chain complex II7.10E-03
17GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)7.10E-03
18GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane7.10E-03
19GO:0019773: proteasome core complex, alpha-subunit complex8.15E-03
20GO:0005765: lysosomal membrane1.29E-02
21GO:0008541: proteasome regulatory particle, lid subcomplex1.29E-02
22GO:0005829: cytosol1.94E-02
23GO:0031966: mitochondrial membrane2.06E-02
24GO:0005758: mitochondrial intermembrane space2.13E-02
25GO:0000502: proteasome complex2.21E-02
26GO:0070469: respiratory chain2.29E-02
27GO:0005741: mitochondrial outer membrane2.44E-02
28GO:0005839: proteasome core complex2.44E-02
29GO:0005747: mitochondrial respiratory chain complex I2.70E-02
30GO:0005770: late endosome3.48E-02
31GO:0016592: mediator complex4.23E-02
32GO:0071944: cell periphery4.43E-02
33GO:0005759: mitochondrial matrix4.92E-02
Gene type



Gene DE type