Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G39800

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
2GO:0071629: ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome0.00E+00
3GO:0015843: methylammonium transport0.00E+00
4GO:0015822: ornithine transport0.00E+00
5GO:0042178: xenobiotic catabolic process0.00E+00
6GO:0010336: gibberellic acid homeostasis0.00E+00
7GO:0009715: chalcone biosynthetic process0.00E+00
8GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene0.00E+00
9GO:0005996: monosaccharide metabolic process0.00E+00
10GO:0090393: sepal giant cell development0.00E+00
11GO:0019464: glycine decarboxylation via glycine cleavage system1.19E-07
12GO:0006546: glycine catabolic process1.19E-07
13GO:0009902: chloroplast relocation2.56E-05
14GO:0080167: response to karrikin3.06E-05
15GO:0016117: carotenoid biosynthetic process8.79E-05
16GO:0007155: cell adhesion1.45E-04
17GO:0015801: aromatic amino acid transport1.84E-04
18GO:0000066: mitochondrial ornithine transport1.84E-04
19GO:0006805: xenobiotic metabolic process1.84E-04
20GO:0019510: S-adenosylhomocysteine catabolic process1.84E-04
21GO:1901349: glucosinolate transport1.84E-04
22GO:1902265: abscisic acid homeostasis1.84E-04
23GO:0090449: phloem glucosinolate loading1.84E-04
24GO:0000272: polysaccharide catabolic process3.60E-04
25GO:0009813: flavonoid biosynthetic process3.84E-04
26GO:0030388: fructose 1,6-bisphosphate metabolic process4.15E-04
27GO:0009629: response to gravity4.15E-04
28GO:0033353: S-adenosylmethionine cycle4.15E-04
29GO:0015786: UDP-glucose transport4.15E-04
30GO:0007154: cell communication4.15E-04
31GO:0015712: hexose phosphate transport4.15E-04
32GO:0019253: reductive pentose-phosphate cycle5.30E-04
33GO:0009833: plant-type primary cell wall biogenesis6.59E-04
34GO:0035436: triose phosphate transmembrane transport6.76E-04
35GO:0006696: ergosterol biosynthetic process6.76E-04
36GO:0044375: regulation of peroxisome size6.76E-04
37GO:0005977: glycogen metabolic process6.76E-04
38GO:0015783: GDP-fucose transport6.76E-04
39GO:0006011: UDP-glucose metabolic process6.76E-04
40GO:0031022: nuclear migration along microfilament6.76E-04
41GO:0017157: regulation of exocytosis6.76E-04
42GO:0006000: fructose metabolic process6.76E-04
43GO:0006810: transport7.83E-04
44GO:0006730: one-carbon metabolic process9.58E-04
45GO:0006168: adenine salvage9.65E-04
46GO:0042823: pyridoxal phosphate biosynthetic process9.65E-04
47GO:0032877: positive regulation of DNA endoreduplication9.65E-04
48GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly9.65E-04
49GO:0006166: purine ribonucleoside salvage9.65E-04
50GO:0072334: UDP-galactose transmembrane transport9.65E-04
51GO:0015696: ammonium transport9.65E-04
52GO:0009963: positive regulation of flavonoid biosynthetic process9.65E-04
53GO:0071555: cell wall organization1.27E-03
54GO:0009694: jasmonic acid metabolic process1.28E-03
55GO:0006542: glutamine biosynthetic process1.28E-03
56GO:0019676: ammonia assimilation cycle1.28E-03
57GO:0048442: sepal development1.28E-03
58GO:0009765: photosynthesis, light harvesting1.28E-03
59GO:0045727: positive regulation of translation1.28E-03
60GO:0072488: ammonium transmembrane transport1.28E-03
61GO:0015713: phosphoglycerate transport1.28E-03
62GO:0044209: AMP salvage1.63E-03
63GO:0016094: polyprenol biosynthetic process1.63E-03
64GO:0019408: dolichol biosynthetic process1.63E-03
65GO:0016120: carotene biosynthetic process1.63E-03
66GO:0071554: cell wall organization or biogenesis1.74E-03
67GO:0010942: positive regulation of cell death2.01E-03
68GO:0010304: PSII associated light-harvesting complex II catabolic process2.01E-03
69GO:0006559: L-phenylalanine catabolic process2.01E-03
70GO:0009903: chloroplast avoidance movement2.41E-03
71GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity2.41E-03
72GO:0045926: negative regulation of growth2.41E-03
73GO:0010076: maintenance of floral meristem identity2.41E-03
74GO:0017148: negative regulation of translation2.41E-03
75GO:0006633: fatty acid biosynthetic process2.69E-03
76GO:0008152: metabolic process2.82E-03
77GO:0046686: response to cadmium ion3.06E-03
78GO:0018298: protein-chromophore linkage3.25E-03
79GO:0009817: defense response to fungus, incompatible interaction3.25E-03
80GO:0031540: regulation of anthocyanin biosynthetic process3.28E-03
81GO:0052543: callose deposition in cell wall3.28E-03
82GO:0016559: peroxisome fission3.28E-03
83GO:0009787: regulation of abscisic acid-activated signaling pathway3.28E-03
84GO:0032544: plastid translation3.75E-03
85GO:0006002: fructose 6-phosphate metabolic process3.75E-03
86GO:0022900: electron transport chain3.75E-03
87GO:0009637: response to blue light4.12E-03
88GO:0009853: photorespiration4.12E-03
89GO:0006754: ATP biosynthetic process4.25E-03
90GO:0009056: catabolic process4.25E-03
91GO:0009926: auxin polar transport5.30E-03
92GO:0009744: response to sucrose5.30E-03
93GO:0010192: mucilage biosynthetic process5.30E-03
94GO:0051555: flavonol biosynthetic process5.30E-03
95GO:0048441: petal development5.30E-03
96GO:0042546: cell wall biogenesis5.51E-03
97GO:0018119: peptidyl-cysteine S-nitrosylation5.85E-03
98GO:0009773: photosynthetic electron transport in photosystem I5.85E-03
99GO:0009636: response to toxic substance5.95E-03
100GO:0009611: response to wounding6.00E-03
101GO:0009725: response to hormone7.03E-03
102GO:0006094: gluconeogenesis7.03E-03
103GO:0009767: photosynthetic electron transport chain7.03E-03
104GO:0005986: sucrose biosynthetic process7.03E-03
105GO:0030048: actin filament-based movement7.03E-03
106GO:0009809: lignin biosynthetic process7.14E-03
107GO:0010224: response to UV-B7.39E-03
108GO:0010223: secondary shoot formation7.64E-03
109GO:0009887: animal organ morphogenesis7.64E-03
110GO:0009934: regulation of meristem structural organization7.64E-03
111GO:0048768: root hair cell tip growth7.64E-03
112GO:0048440: carpel development7.64E-03
113GO:0006857: oligopeptide transport7.64E-03
114GO:0007031: peroxisome organization8.27E-03
115GO:0042343: indole glucosinolate metabolic process8.27E-03
116GO:0006096: glycolytic process8.44E-03
117GO:0006833: water transport8.93E-03
118GO:0005975: carbohydrate metabolic process9.79E-03
119GO:0042545: cell wall modification9.87E-03
120GO:0009624: response to nematode1.02E-02
121GO:0009695: jasmonic acid biosynthetic process1.03E-02
122GO:0009768: photosynthesis, light harvesting in photosystem I1.03E-02
123GO:0003333: amino acid transmembrane transport1.10E-02
124GO:0098542: defense response to other organism1.10E-02
125GO:0031408: oxylipin biosynthetic process1.10E-02
126GO:0006366: transcription from RNA polymerase II promoter1.10E-02
127GO:0009411: response to UV1.25E-02
128GO:0009294: DNA mediated transformation1.25E-02
129GO:0048443: stamen development1.32E-02
130GO:0019722: calcium-mediated signaling1.32E-02
131GO:0034220: ion transmembrane transport1.48E-02
132GO:0015991: ATP hydrolysis coupled proton transport1.48E-02
133GO:0042631: cellular response to water deprivation1.48E-02
134GO:0042335: cuticle development1.48E-02
135GO:0009741: response to brassinosteroid1.56E-02
136GO:0006520: cellular amino acid metabolic process1.56E-02
137GO:0045489: pectin biosynthetic process1.56E-02
138GO:0015986: ATP synthesis coupled proton transport1.64E-02
139GO:0007059: chromosome segregation1.64E-02
140GO:0019252: starch biosynthetic process1.73E-02
141GO:0045490: pectin catabolic process1.76E-02
142GO:0007623: circadian rhythm1.76E-02
143GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.81E-02
144GO:0007264: small GTPase mediated signal transduction1.90E-02
145GO:0010583: response to cyclopentenone1.90E-02
146GO:0019761: glucosinolate biosynthetic process1.90E-02
147GO:0048235: pollen sperm cell differentiation1.90E-02
148GO:0010090: trichome morphogenesis1.99E-02
149GO:0007267: cell-cell signaling2.17E-02
150GO:0051607: defense response to virus2.26E-02
151GO:0009416: response to light stimulus2.35E-02
152GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.45E-02
153GO:0010029: regulation of seed germination2.45E-02
154GO:0042128: nitrate assimilation2.55E-02
155GO:0051301: cell division2.62E-02
156GO:0048573: photoperiodism, flowering2.64E-02
157GO:0030244: cellulose biosynthetic process2.84E-02
158GO:0009832: plant-type cell wall biogenesis2.94E-02
159GO:0010218: response to far red light3.05E-02
160GO:0007049: cell cycle3.05E-02
161GO:0009407: toxin catabolic process3.05E-02
162GO:0007568: aging3.15E-02
163GO:0010119: regulation of stomatal movement3.15E-02
164GO:0006865: amino acid transport3.26E-02
165GO:0016051: carbohydrate biosynthetic process3.36E-02
166GO:0009867: jasmonic acid mediated signaling pathway3.36E-02
167GO:0006839: mitochondrial transport3.69E-02
168GO:0010114: response to red light4.03E-02
169GO:0008283: cell proliferation4.03E-02
170GO:0000165: MAPK cascade4.61E-02
171GO:0006364: rRNA processing4.98E-02
172GO:0006486: protein glycosylation4.98E-02
RankGO TermAdjusted P value
1GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
2GO:0046905: phytoene synthase activity0.00E+00
3GO:0050505: hydroquinone glucosyltransferase activity0.00E+00
4GO:0030795: jasmonate O-methyltransferase activity0.00E+00
5GO:0102078: methyl jasmonate methylesterase activity0.00E+00
6GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity0.00E+00
7GO:1990055: phenylacetaldehyde synthase activity0.00E+00
8GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
9GO:0050281: serine-glyoxylate transaminase activity0.00E+00
10GO:0016719: carotene 7,8-desaturase activity0.00E+00
11GO:0016210: naringenin-chalcone synthase activity0.00E+00
12GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
13GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity0.00E+00
14GO:0004760: serine-pyruvate transaminase activity0.00E+00
15GO:0004375: glycine dehydrogenase (decarboxylating) activity4.05E-08
16GO:0045430: chalcone isomerase activity2.56E-05
17GO:0051996: squalene synthase activity1.84E-04
18GO:0010313: phytochrome binding1.84E-04
19GO:0090448: glucosinolate:proton symporter activity1.84E-04
20GO:0004837: tyrosine decarboxylase activity1.84E-04
21GO:0047259: glucomannan 4-beta-mannosyltransferase activity1.84E-04
22GO:0004013: adenosylhomocysteinase activity1.84E-04
23GO:0004310: farnesyl-diphosphate farnesyltransferase activity4.15E-04
24GO:0048531: beta-1,3-galactosyltransferase activity4.15E-04
25GO:0008967: phosphoglycolate phosphatase activity4.15E-04
26GO:0004618: phosphoglycerate kinase activity4.15E-04
27GO:0010297: heteropolysaccharide binding4.15E-04
28GO:0004047: aminomethyltransferase activity4.15E-04
29GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity4.15E-04
30GO:0015173: aromatic amino acid transmembrane transporter activity4.15E-04
31GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.15E-04
32GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity4.15E-04
33GO:0000064: L-ornithine transmembrane transporter activity4.15E-04
34GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity4.15E-04
35GO:0016757: transferase activity, transferring glycosyl groups5.31E-04
36GO:0003983: UTP:glucose-1-phosphate uridylyltransferase activity6.76E-04
37GO:0071917: triose-phosphate transmembrane transporter activity6.76E-04
38GO:0005457: GDP-fucose transmembrane transporter activity6.76E-04
39GO:0003913: DNA photolyase activity6.76E-04
40GO:0004148: dihydrolipoyl dehydrogenase activity6.76E-04
41GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity6.76E-04
42GO:0048027: mRNA 5'-UTR binding9.65E-04
43GO:0003999: adenine phosphoribosyltransferase activity9.65E-04
44GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity9.65E-04
45GO:0005460: UDP-glucose transmembrane transporter activity9.65E-04
46GO:0015120: phosphoglycerate transmembrane transporter activity1.28E-03
47GO:0019905: syntaxin binding1.28E-03
48GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.28E-03
49GO:0008453: alanine-glyoxylate transaminase activity1.28E-03
50GO:0017137: Rab GTPase binding1.63E-03
51GO:0004356: glutamate-ammonia ligase activity1.63E-03
52GO:0005459: UDP-galactose transmembrane transporter activity1.63E-03
53GO:0045547: dehydrodolichyl diphosphate synthase activity1.63E-03
54GO:0002094: polyprenyltransferase activity1.63E-03
55GO:0005275: amine transmembrane transporter activity1.63E-03
56GO:0016787: hydrolase activity1.78E-03
57GO:0042578: phosphoric ester hydrolase activity2.01E-03
58GO:0008519: ammonium transmembrane transporter activity2.01E-03
59GO:0080030: methyl indole-3-acetate esterase activity2.01E-03
60GO:0000210: NAD+ diphosphatase activity2.01E-03
61GO:0102229: amylopectin maltohydrolase activity2.01E-03
62GO:0016413: O-acetyltransferase activity2.36E-03
63GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.41E-03
64GO:0051753: mannan synthase activity2.41E-03
65GO:0016161: beta-amylase activity2.41E-03
66GO:0043295: glutathione binding2.83E-03
67GO:0016621: cinnamoyl-CoA reductase activity2.83E-03
68GO:0009881: photoreceptor activity2.83E-03
69GO:0015297: antiporter activity2.85E-03
70GO:0008194: UDP-glycosyltransferase activity3.49E-03
71GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism4.25E-03
72GO:0030955: potassium ion binding4.76E-03
73GO:0004743: pyruvate kinase activity4.76E-03
74GO:0004860: protein kinase inhibitor activity5.85E-03
75GO:0046961: proton-transporting ATPase activity, rotational mechanism5.85E-03
76GO:0004089: carbonate dehydratase activity7.03E-03
77GO:0008083: growth factor activity7.64E-03
78GO:0042973: glucan endo-1,3-beta-D-glucosidase activity7.64E-03
79GO:0045330: aspartyl esterase activity7.91E-03
80GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity8.93E-03
81GO:0031409: pigment binding8.93E-03
82GO:0102336: 3-oxo-arachidoyl-CoA synthase activity8.93E-03
83GO:0102337: 3-oxo-cerotoyl-CoA synthase activity8.93E-03
84GO:0080043: quercetin 3-O-glucosyltransferase activity9.28E-03
85GO:0080044: quercetin 7-O-glucosyltransferase activity9.28E-03
86GO:0030599: pectinesterase activity9.58E-03
87GO:0001046: core promoter sequence-specific DNA binding9.60E-03
88GO:0051087: chaperone binding1.03E-02
89GO:0035251: UDP-glucosyltransferase activity1.10E-02
90GO:0004176: ATP-dependent peptidase activity1.10E-02
91GO:0016758: transferase activity, transferring hexosyl groups1.24E-02
92GO:0016760: cellulose synthase (UDP-forming) activity1.25E-02
93GO:0004499: N,N-dimethylaniline monooxygenase activity1.32E-02
94GO:0005355: glucose transmembrane transporter activity1.64E-02
95GO:0050662: coenzyme binding1.64E-02
96GO:0004872: receptor activity1.73E-02
97GO:0019901: protein kinase binding1.73E-02
98GO:0048038: quinone binding1.81E-02
99GO:0004518: nuclease activity1.90E-02
100GO:0005215: transporter activity1.96E-02
101GO:0016759: cellulose synthase activity2.07E-02
102GO:0008237: metallopeptidase activity2.17E-02
103GO:0008483: transaminase activity2.17E-02
104GO:0016597: amino acid binding2.26E-02
105GO:0015250: water channel activity2.35E-02
106GO:0016168: chlorophyll binding2.45E-02
107GO:0030247: polysaccharide binding2.64E-02
108GO:0005096: GTPase activator activity2.94E-02
109GO:0016740: transferase activity3.01E-02
110GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.05E-02
111GO:0004222: metalloendopeptidase activity3.05E-02
112GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.15E-02
113GO:0050897: cobalt ion binding3.15E-02
114GO:0050660: flavin adenine dinucleotide binding3.16E-02
115GO:0003993: acid phosphatase activity3.47E-02
116GO:0050661: NADP binding3.69E-02
117GO:0052689: carboxylic ester hydrolase activity3.74E-02
118GO:0004364: glutathione transferase activity3.92E-02
119GO:0051537: 2 iron, 2 sulfur cluster binding4.26E-02
120GO:0051287: NAD binding4.61E-02
RankGO TermAdjusted P value
1GO:0097708: intracellular vesicle0.00E+00
2GO:0009507: chloroplast8.43E-10
3GO:0005960: glycine cleavage complex4.05E-08
4GO:0009570: chloroplast stroma2.89E-05
5GO:0009941: chloroplast envelope2.91E-05
6GO:0009344: nitrite reductase complex [NAD(P)H]1.84E-04
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.21E-04
8GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain4.15E-04
9GO:0000427: plastid-encoded plastid RNA polymerase complex4.15E-04
10GO:0042406: extrinsic component of endoplasmic reticulum membrane6.76E-04
11GO:0009509: chromoplast6.76E-04
12GO:0016020: membrane1.27E-03
13GO:0005794: Golgi apparatus1.31E-03
14GO:0010287: plastoglobule1.88E-03
15GO:0009579: thylakoid1.88E-03
16GO:0009534: chloroplast thylakoid1.91E-03
17GO:0048046: apoplast1.91E-03
18GO:0009535: chloroplast thylakoid membrane1.96E-03
19GO:0009505: plant-type cell wall1.99E-03
20GO:0010319: stromule2.23E-03
21GO:0005779: integral component of peroxisomal membrane3.75E-03
22GO:0005765: lysosomal membrane5.85E-03
23GO:0048471: perinuclear region of cytoplasm5.85E-03
24GO:0031012: extracellular matrix7.03E-03
25GO:0019013: viral nucleocapsid7.03E-03
26GO:0030095: chloroplast photosystem II7.64E-03
27GO:0005753: mitochondrial proton-transporting ATP synthase complex8.27E-03
28GO:0030076: light-harvesting complex8.27E-03
29GO:0009654: photosystem II oxygen evolving complex1.03E-02
30GO:0009543: chloroplast thylakoid lumen1.28E-02
31GO:0005623: cell1.31E-02
32GO:0016021: integral component of membrane1.62E-02
33GO:0009522: photosystem I1.64E-02
34GO:0005887: integral component of plasma membrane1.68E-02
35GO:0009523: photosystem II1.73E-02
36GO:0019898: extrinsic component of membrane1.73E-02
37GO:0009705: plant-type vacuole membrane1.76E-02
38GO:0071944: cell periphery1.99E-02
39GO:0005778: peroxisomal membrane2.17E-02
40GO:0005783: endoplasmic reticulum2.24E-02
41GO:0046658: anchored component of plasma membrane2.34E-02
42GO:0000139: Golgi membrane2.64E-02
43GO:0005777: peroxisome2.79E-02
44GO:0009707: chloroplast outer membrane2.84E-02
45GO:0031969: chloroplast membrane3.39E-02
46GO:0005819: spindle3.58E-02
47GO:0009506: plasmodesma3.73E-02
48GO:0031902: late endosome membrane3.80E-02
49GO:0031225: anchored component of membrane4.08E-02
50GO:0005743: mitochondrial inner membrane4.63E-02
Gene type



Gene DE type