co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39510

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035304: regulation of protein dephosphorylation	7.70E-06
2	GO:0042549: photosystem II stabilization	5.52E-05
3	GO:0010019: chloroplast-nucleus signaling pathway	6.80E-05
4	GO:0010078: maintenance of root meristem identity	9.62E-05
5	GO:0043562: cellular response to nitrogen levels	1.11E-04
6	GO:0010205: photoinhibition	1.44E-04
7	GO:0019684: photosynthesis, light reaction	1.78E-04
8	GO:0043085: positive regulation of catalytic activity	1.78E-04
9	GO:0009684: indoleacetic acid biosynthetic process	1.78E-04
10	GO:0010588: cotyledon vascular tissue pattern formation	2.14E-04
11	GO:0010207: photosystem II assembly	2.33E-04
12	GO:0048467: gynoecium development	2.33E-04
13	GO:0010030: positive regulation of seed germination	2.52E-04
14	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.16E-04
15	GO:0080022: primary root development	4.37E-04
16	GO:0010087: phloem or xylem histogenesis	4.37E-04
17	GO:0042631: cellular response to water deprivation	4.37E-04
18	GO:0009958: positive gravitropism	4.60E-04
19	GO:0048825: cotyledon development	5.05E-04
20	GO:0009851: auxin biosynthetic process	5.05E-04
21	GO:0015995: chlorophyll biosynthetic process	7.44E-04
22	GO:0048527: lateral root development	8.71E-04
23	GO:0009585: red, far-red light phototransduction	1.32E-03
24	GO:0048367: shoot system development	1.50E-03
25	GO:0009723: response to ethylene	3.54E-03
26	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.80E-03
27	GO:0016042: lipid catabolic process	4.74E-03
28	GO:0009908: flower development	6.71E-03
29	GO:0006468: protein phosphorylation	6.81E-03
30	GO:0035556: intracellular signal transduction	7.47E-03
31	GO:0042742: defense response to bacterium	1.18E-02
32	GO:0005975: carbohydrate metabolic process	1.59E-02
33	GO:0007275: multicellular organism development	1.91E-02
34	GO:0009793: embryo development ending in seed dormancy	2.14E-02

Rank	GO Term	Adjusted P value
1	GO:0046906: tetrapyrrole binding	2.75E-06
2	GO:0010242: oxygen evolving activity	2.75E-06
3	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	7.70E-06
4	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	7.70E-06
5	GO:0016846: carbon-sulfur lyase activity	4.33E-05
6	GO:0019899: enzyme binding	8.18E-05
7	GO:0004565: beta-galactosidase activity	2.14E-04
8	GO:0008266: poly(U) RNA binding	2.33E-04
9	GO:0019901: protein kinase binding	5.05E-04
10	GO:0016788: hydrolase activity, acting on ester bonds	3.25E-03
11	GO:0052689: carboxylic ester hydrolase activity	3.97E-03
12	GO:0004674: protein serine/threonine kinase activity	4.34E-03
13	GO:0009055: electron carrier activity	5.08E-03
14	GO:0005507: copper ion binding	9.21E-03
15	GO:0005509: calcium ion binding	1.11E-02
16	GO:0004672: protein kinase activity	1.55E-02
17	GO:0005515: protein binding	2.43E-02
18	GO:0003676: nucleic acid binding	3.24E-02

Rank	GO Term	Adjusted P value
1	GO:0031977: thylakoid lumen	1.95E-05
2	GO:0009543: chloroplast thylakoid lumen	6.09E-05
3	GO:0030095: chloroplast photosystem II	2.33E-04
4	GO:0009654: photosystem II oxygen evolving complex	3.11E-04
5	GO:0019898: extrinsic component of membrane	5.05E-04
6	GO:0009579: thylakoid	5.59E-04
7	GO:0009706: chloroplast inner membrane	1.66E-03
8	GO:0010287: plastoglobule	1.86E-03
9	GO:0009535: chloroplast thylakoid membrane	2.00E-03
10	GO:0031969: chloroplast membrane	3.71E-03
11	GO:0009570: chloroplast stroma	5.77E-03
12	GO:0009534: chloroplast thylakoid	8.21E-03
13	GO:0016021: integral component of membrane	1.36E-02
14	GO:0009536: plastid	1.36E-02
15	GO:0009505: plant-type cell wall	1.38E-02
16	GO:0005789: endoplasmic reticulum membrane	1.59E-02
17	GO:0009507: chloroplast	2.87E-02
18	GO:0048046: apoplast	2.96E-02
19	GO:0009941: chloroplast envelope	3.56E-02
20	GO:0005773: vacuole	3.88E-02