Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G39460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
2GO:0045176: apical protein localization0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0033494: ferulate metabolic process0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0090470: shoot organ boundary specification0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0042821: pyridoxal biosynthetic process0.00E+00
10GO:0042820: vitamin B6 catabolic process0.00E+00
11GO:0042493: response to drug0.00E+00
12GO:0042371: vitamin K biosynthetic process0.00E+00
13GO:1905499: trichome papilla formation0.00E+00
14GO:0006399: tRNA metabolic process0.00E+00
15GO:0002184: cytoplasmic translational termination0.00E+00
16GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
17GO:0006412: translation5.04E-14
18GO:0032544: plastid translation1.12E-13
19GO:0015979: photosynthesis4.14E-12
20GO:0042254: ribosome biogenesis8.52E-12
21GO:0010027: thylakoid membrane organization3.35E-07
22GO:0009658: chloroplast organization4.47E-07
23GO:0009773: photosynthetic electron transport in photosystem I1.80E-06
24GO:0042549: photosystem II stabilization3.80E-06
25GO:0009735: response to cytokinin5.06E-06
26GO:0015976: carbon utilization9.33E-05
27GO:0010207: photosystem II assembly1.21E-04
28GO:0015995: chlorophyll biosynthetic process1.62E-04
29GO:0010025: wax biosynthetic process1.68E-04
30GO:0042372: phylloquinone biosynthetic process2.80E-04
31GO:0010196: nonphotochemical quenching3.62E-04
32GO:0009443: pyridoxal 5'-phosphate salvage3.94E-04
33GO:0043489: RNA stabilization3.94E-04
34GO:1904966: positive regulation of vitamin E biosynthetic process3.94E-04
35GO:0000481: maturation of 5S rRNA3.94E-04
36GO:1904964: positive regulation of phytol biosynthetic process3.94E-04
37GO:0042759: long-chain fatty acid biosynthetic process3.94E-04
38GO:0034337: RNA folding3.94E-04
39GO:0071588: hydrogen peroxide mediated signaling pathway3.94E-04
40GO:0042335: cuticle development4.50E-04
41GO:0006353: DNA-templated transcription, termination4.53E-04
42GO:0042761: very long-chain fatty acid biosynthetic process7.83E-04
43GO:0010115: regulation of abscisic acid biosynthetic process8.55E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process8.55E-04
45GO:0034755: iron ion transmembrane transport8.55E-04
46GO:0001736: establishment of planar polarity8.55E-04
47GO:0006568: tryptophan metabolic process8.55E-04
48GO:0010024: phytochromobilin biosynthetic process8.55E-04
49GO:0010270: photosystem II oxygen evolving complex assembly8.55E-04
50GO:0043085: positive regulation of catalytic activity1.05E-03
51GO:0016024: CDP-diacylglycerol biosynthetic process1.20E-03
52GO:0006006: glucose metabolic process1.36E-03
53GO:0090391: granum assembly1.39E-03
54GO:0006518: peptide metabolic process1.39E-03
55GO:0010581: regulation of starch biosynthetic process1.39E-03
56GO:0006788: heme oxidation1.39E-03
57GO:0071492: cellular response to UV-A1.39E-03
58GO:0009817: defense response to fungus, incompatible interaction1.44E-03
59GO:0010143: cutin biosynthetic process1.53E-03
60GO:0010020: chloroplast fission1.53E-03
61GO:0009650: UV protection2.00E-03
62GO:0006424: glutamyl-tRNA aminoacylation2.00E-03
63GO:0051016: barbed-end actin filament capping2.00E-03
64GO:0010088: phloem development2.00E-03
65GO:0006986: response to unfolded protein2.00E-03
66GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.00E-03
67GO:2001141: regulation of RNA biosynthetic process2.00E-03
68GO:0010371: regulation of gibberellin biosynthetic process2.00E-03
69GO:0051085: chaperone mediated protein folding requiring cofactor2.00E-03
70GO:0009152: purine ribonucleotide biosynthetic process2.00E-03
71GO:0046653: tetrahydrofolate metabolic process2.00E-03
72GO:0010239: chloroplast mRNA processing2.00E-03
73GO:0045454: cell redox homeostasis2.46E-03
74GO:2000122: negative regulation of stomatal complex development2.69E-03
75GO:0042991: transcription factor import into nucleus2.69E-03
76GO:0010037: response to carbon dioxide2.69E-03
77GO:0071486: cellular response to high light intensity2.69E-03
78GO:0045727: positive regulation of translation2.69E-03
79GO:0010227: floral organ abscission3.07E-03
80GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.07E-03
81GO:0019722: calcium-mediated signaling3.33E-03
82GO:0009306: protein secretion3.33E-03
83GO:0032543: mitochondrial translation3.44E-03
84GO:0006564: L-serine biosynthetic process3.44E-03
85GO:0010236: plastoquinone biosynthetic process3.44E-03
86GO:0031365: N-terminal protein amino acid modification3.44E-03
87GO:0006461: protein complex assembly3.44E-03
88GO:0006665: sphingolipid metabolic process3.44E-03
89GO:0000413: protein peptidyl-prolyl isomerization3.91E-03
90GO:0006655: phosphatidylglycerol biosynthetic process4.26E-03
91GO:0010190: cytochrome b6f complex assembly4.26E-03
92GO:0006828: manganese ion transport4.26E-03
93GO:0006561: proline biosynthetic process4.26E-03
94GO:0048827: phyllome development4.26E-03
95GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.26E-03
96GO:0000470: maturation of LSU-rRNA4.26E-03
97GO:0048825: cotyledon development4.86E-03
98GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.13E-03
99GO:0006694: steroid biosynthetic process5.13E-03
100GO:1901259: chloroplast rRNA processing5.13E-03
101GO:0010019: chloroplast-nucleus signaling pathway5.13E-03
102GO:0006400: tRNA modification6.06E-03
103GO:0009772: photosynthetic electron transport in photosystem II6.06E-03
104GO:0051693: actin filament capping6.06E-03
105GO:0009828: plant-type cell wall loosening6.31E-03
106GO:0007267: cell-cell signaling6.71E-03
107GO:0030091: protein repair7.05E-03
108GO:0006605: protein targeting7.05E-03
109GO:0042255: ribosome assembly7.05E-03
110GO:0032508: DNA duplex unwinding7.05E-03
111GO:0048564: photosystem I assembly7.05E-03
112GO:0055114: oxidation-reduction process7.33E-03
113GO:0019430: removal of superoxide radicals8.09E-03
114GO:0009657: plastid organization8.09E-03
115GO:0009808: lignin metabolic process8.09E-03
116GO:0071482: cellular response to light stimulus8.09E-03
117GO:0000902: cell morphogenesis9.18E-03
118GO:0009051: pentose-phosphate shunt, oxidative branch9.18E-03
119GO:0009793: embryo development ending in seed dormancy9.37E-03
120GO:0018298: protein-chromophore linkage9.86E-03
121GO:0010380: regulation of chlorophyll biosynthetic process1.03E-02
122GO:0006779: porphyrin-containing compound biosynthetic process1.03E-02
123GO:0009631: cold acclimation1.14E-02
124GO:0006782: protoporphyrinogen IX biosynthetic process1.15E-02
125GO:0009688: abscisic acid biosynthetic process1.15E-02
126GO:0048829: root cap development1.15E-02
127GO:0006949: syncytium formation1.15E-02
128GO:0009637: response to blue light1.25E-02
129GO:0016042: lipid catabolic process1.26E-02
130GO:0006816: calcium ion transport1.28E-02
131GO:0009073: aromatic amino acid family biosynthetic process1.28E-02
132GO:0008285: negative regulation of cell proliferation1.28E-02
133GO:0006879: cellular iron ion homeostasis1.28E-02
134GO:0006352: DNA-templated transcription, initiation1.28E-02
135GO:0006415: translational termination1.28E-02
136GO:0009750: response to fructose1.28E-02
137GO:0048765: root hair cell differentiation1.28E-02
138GO:0034599: cellular response to oxidative stress1.31E-02
139GO:0010152: pollen maturation1.41E-02
140GO:0006457: protein folding1.52E-02
141GO:0010628: positive regulation of gene expression1.54E-02
142GO:0010229: inflorescence development1.54E-02
143GO:0030036: actin cytoskeleton organization1.54E-02
144GO:0009725: response to hormone1.54E-02
145GO:0010114: response to red light1.62E-02
146GO:0007015: actin filament organization1.68E-02
147GO:0019253: reductive pentose-phosphate cycle1.68E-02
148GO:0010540: basipetal auxin transport1.68E-02
149GO:0007030: Golgi organization1.82E-02
150GO:0019762: glucosinolate catabolic process1.96E-02
151GO:0009664: plant-type cell wall organization2.04E-02
152GO:0009826: unidimensional cell growth2.07E-02
153GO:0000027: ribosomal large subunit assembly2.11E-02
154GO:0007010: cytoskeleton organization2.11E-02
155GO:0006364: rRNA processing2.19E-02
156GO:0006418: tRNA aminoacylation for protein translation2.27E-02
157GO:0009768: photosynthesis, light harvesting in photosystem I2.27E-02
158GO:0010073: meristem maintenance2.27E-02
159GO:0006810: transport2.40E-02
160GO:0003333: amino acid transmembrane transport2.43E-02
161GO:0030245: cellulose catabolic process2.59E-02
162GO:0009411: response to UV2.75E-02
163GO:0010091: trichome branching2.92E-02
164GO:0009416: response to light stimulus3.10E-02
165GO:0042742: defense response to bacterium3.23E-02
166GO:0080022: primary root development3.27E-02
167GO:0008033: tRNA processing3.27E-02
168GO:0009958: positive gravitropism3.45E-02
169GO:0006662: glycerol ether metabolic process3.45E-02
170GO:0010182: sugar mediated signaling pathway3.45E-02
171GO:0007018: microtubule-based movement3.63E-02
172GO:0009556: microsporogenesis3.82E-02
173GO:0006869: lipid transport3.98E-02
174GO:0000302: response to reactive oxygen species4.01E-02
175GO:0016132: brassinosteroid biosynthetic process4.01E-02
176GO:0032502: developmental process4.20E-02
177GO:0042744: hydrogen peroxide catabolic process4.42E-02
178GO:0009790: embryo development4.53E-02
179GO:0071805: potassium ion transmembrane transport4.79E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0010301: xanthoxin dehydrogenase activity0.00E+00
3GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
4GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
5GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
8GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
9GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
10GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
11GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
12GO:0050614: delta24-sterol reductase activity0.00E+00
13GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
14GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
15GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
16GO:0019843: rRNA binding9.28E-27
17GO:0003735: structural constituent of ribosome5.87E-16
18GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.44E-08
19GO:0005528: FK506 binding9.36E-06
20GO:0008266: poly(U) RNA binding1.21E-04
21GO:0016788: hydrolase activity, acting on ester bonds2.79E-04
22GO:0051920: peroxiredoxin activity2.80E-04
23GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity3.94E-04
24GO:0030794: (S)-coclaurine-N-methyltransferase activity3.94E-04
25GO:0004425: indole-3-glycerol-phosphate synthase activity3.94E-04
26GO:0004033: aldo-keto reductase (NADP) activity4.53E-04
27GO:0016209: antioxidant activity4.53E-04
28GO:0016630: protochlorophyllide reductase activity8.55E-04
29GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity8.55E-04
30GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.55E-04
31GO:0004617: phosphoglycerate dehydrogenase activity8.55E-04
32GO:0008047: enzyme activator activity9.10E-04
33GO:0016168: chlorophyll binding1.11E-03
34GO:0004089: carbonate dehydratase activity1.36E-03
35GO:0070330: aromatase activity1.39E-03
36GO:0050734: hydroxycinnamoyltransferase activity1.39E-03
37GO:0002161: aminoacyl-tRNA editing activity1.39E-03
38GO:0030267: glyoxylate reductase (NADP) activity1.39E-03
39GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.39E-03
40GO:0070402: NADPH binding1.39E-03
41GO:0008864: formyltetrahydrofolate deformylase activity1.39E-03
42GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.39E-03
43GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.39E-03
44GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.39E-03
45GO:0016149: translation release factor activity, codon specific2.00E-03
46GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity2.00E-03
47GO:0016851: magnesium chelatase activity2.00E-03
48GO:0043023: ribosomal large subunit binding2.00E-03
49GO:0008097: 5S rRNA binding2.00E-03
50GO:0001872: (1->3)-beta-D-glucan binding2.00E-03
51GO:0052689: carboxylic ester hydrolase activity2.14E-03
52GO:0016987: sigma factor activity2.69E-03
53GO:0010328: auxin influx transmembrane transporter activity2.69E-03
54GO:0043495: protein anchor2.69E-03
55GO:0004392: heme oxygenase (decyclizing) activity2.69E-03
56GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.69E-03
57GO:0004659: prenyltransferase activity2.69E-03
58GO:0001053: plastid sigma factor activity2.69E-03
59GO:0010011: auxin binding2.69E-03
60GO:0004345: glucose-6-phosphate dehydrogenase activity2.69E-03
61GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed2.69E-03
62GO:0030570: pectate lyase activity3.07E-03
63GO:0022891: substrate-specific transmembrane transporter activity3.07E-03
64GO:0005509: calcium ion binding3.28E-03
65GO:0003959: NADPH dehydrogenase activity3.44E-03
66GO:0018685: alkane 1-monooxygenase activity3.44E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor3.44E-03
68GO:0004040: amidase activity3.44E-03
69GO:0009922: fatty acid elongase activity3.44E-03
70GO:0042802: identical protein binding3.90E-03
71GO:0016208: AMP binding4.26E-03
72GO:0004130: cytochrome-c peroxidase activity4.26E-03
73GO:0016688: L-ascorbate peroxidase activity4.26E-03
74GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.26E-03
75GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.26E-03
76GO:0050662: coenzyme binding4.53E-03
77GO:0004791: thioredoxin-disulfide reductase activity4.53E-03
78GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.13E-03
79GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.13E-03
80GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.13E-03
81GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor5.93E-03
82GO:0019899: enzyme binding6.06E-03
83GO:0008235: metalloexopeptidase activity6.06E-03
84GO:0052747: sinapyl alcohol dehydrogenase activity7.05E-03
85GO:0043022: ribosome binding7.05E-03
86GO:0004714: transmembrane receptor protein tyrosine kinase activity7.05E-03
87GO:0003747: translation release factor activity9.18E-03
88GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors9.18E-03
89GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity9.86E-03
90GO:0005381: iron ion transmembrane transporter activity1.03E-02
91GO:0005384: manganese ion transmembrane transporter activity1.03E-02
92GO:0047617: acyl-CoA hydrolase activity1.03E-02
93GO:0004871: signal transducer activity1.03E-02
94GO:0004177: aminopeptidase activity1.28E-02
95GO:0016740: transferase activity1.37E-02
96GO:0000049: tRNA binding1.41E-02
97GO:0045551: cinnamyl-alcohol dehydrogenase activity1.41E-02
98GO:0050661: NADP binding1.43E-02
99GO:0004565: beta-galactosidase activity1.54E-02
100GO:0004022: alcohol dehydrogenase (NAD) activity1.54E-02
101GO:0015095: magnesium ion transmembrane transporter activity1.54E-02
102GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.57E-02
103GO:0003723: RNA binding1.68E-02
104GO:0043621: protein self-association1.75E-02
105GO:0051537: 2 iron, 2 sulfur cluster binding1.75E-02
106GO:0016491: oxidoreductase activity1.95E-02
107GO:0051287: NAD binding1.96E-02
108GO:0031409: pigment binding1.96E-02
109GO:0015079: potassium ion transmembrane transporter activity2.27E-02
110GO:0051087: chaperone binding2.27E-02
111GO:0033612: receptor serine/threonine kinase binding2.43E-02
112GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.67E-02
113GO:0008810: cellulase activity2.75E-02
114GO:0003727: single-stranded RNA binding2.92E-02
115GO:0047134: protein-disulfide reductase activity3.09E-02
116GO:0004812: aminoacyl-tRNA ligase activity3.09E-02
117GO:0016746: transferase activity, transferring acyl groups3.21E-02
118GO:0008080: N-acetyltransferase activity3.45E-02
119GO:0016829: lyase activity4.21E-02
120GO:0051015: actin filament binding4.39E-02
121GO:0016791: phosphatase activity4.59E-02
122GO:0016722: oxidoreductase activity, oxidizing metal ions4.79E-02
123GO:0016597: amino acid binding5.00E-02
124GO:0009055: electron carrier activity5.00E-02
RankGO TermAdjusted P value
1GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0009507: chloroplast2.69E-64
4GO:0009570: chloroplast stroma1.20E-45
5GO:0009941: chloroplast envelope9.72E-36
6GO:0009535: chloroplast thylakoid membrane3.27E-31
7GO:0009579: thylakoid1.03E-24
8GO:0009543: chloroplast thylakoid lumen9.89E-22
9GO:0009534: chloroplast thylakoid3.22E-18
10GO:0031977: thylakoid lumen7.19E-17
11GO:0005840: ribosome7.97E-17
12GO:0009654: photosystem II oxygen evolving complex6.34E-09
13GO:0019898: extrinsic component of membrane7.91E-08
14GO:0030095: chloroplast photosystem II4.47E-06
15GO:0042651: thylakoid membrane1.17E-05
16GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.05E-05
17GO:0016020: membrane3.45E-05
18GO:0009523: photosystem II5.31E-05
19GO:0000311: plastid large ribosomal subunit8.22E-05
20GO:0048046: apoplast9.25E-05
21GO:0009533: chloroplast stromal thylakoid3.62E-04
22GO:0009515: granal stacked thylakoid3.94E-04
23GO:0009923: fatty acid elongase complex3.94E-04
24GO:0009547: plastid ribosome3.94E-04
25GO:0031969: chloroplast membrane4.23E-04
26GO:0008290: F-actin capping protein complex8.55E-04
27GO:0046658: anchored component of plasma membrane9.33E-04
28GO:0010007: magnesium chelatase complex1.39E-03
29GO:0000312: plastid small ribosomal subunit1.53E-03
30GO:0015935: small ribosomal subunit2.57E-03
31GO:0009986: cell surface6.06E-03
32GO:0009536: plastid6.09E-03
33GO:0009505: plant-type cell wall6.39E-03
34GO:0010319: stromule6.71E-03
35GO:0031225: anchored component of membrane6.94E-03
36GO:0010287: plastoglobule7.70E-03
37GO:0015934: large ribosomal subunit1.14E-02
38GO:0005884: actin filament1.28E-02
39GO:0005618: cell wall1.40E-02
40GO:0032040: small-subunit processome1.41E-02
41GO:0030076: light-harvesting complex1.82E-02
42GO:0043234: protein complex1.96E-02
43GO:0005875: microtubule associated complex1.96E-02
44GO:0009532: plastid stroma2.43E-02
45GO:0005874: microtubule2.72E-02
46GO:0022625: cytosolic large ribosomal subunit3.02E-02
47GO:0005871: kinesin complex3.09E-02
48GO:0009706: chloroplast inner membrane3.11E-02
49GO:0005770: late endosome3.45E-02
50GO:0009522: photosystem I3.63E-02
51GO:0009295: nucleoid4.79E-02
52GO:0005778: peroxisomal membrane4.79E-02
Gene type



Gene DE type