co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.00E+00
2	GO:0010378: temperature compensation of the circadian clock	0.00E+00
3	GO:0000390: spliceosomal complex disassembly	0.00E+00
4	GO:0009312: oligosaccharide biosynthetic process	0.00E+00
5	GO:0070070: proton-transporting V-type ATPase complex assembly	0.00E+00
6	GO:0000380: alternative mRNA splicing, via spliceosome	2.30E-05
7	GO:0043687: post-translational protein modification	1.30E-04
8	GO:0019673: GDP-mannose metabolic process	1.30E-04
9	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	1.30E-04
10	GO:1990641: response to iron ion starvation	1.30E-04
11	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	1.30E-04
12	GO:1902265: abscisic acid homeostasis	1.30E-04
13	GO:0006811: ion transport	2.14E-04
14	GO:0007623: circadian rhythm	2.30E-04
15	GO:0030003: cellular cation homeostasis	2.99E-04
16	GO:0045948: positive regulation of translational initiation	2.99E-04
17	GO:0006101: citrate metabolic process	2.99E-04
18	GO:0048209: regulation of vesicle targeting, to, from or within Golgi	2.99E-04
19	GO:0001736: establishment of planar polarity	2.99E-04
20	GO:0032509: endosome transport via multivesicular body sorting pathway	2.99E-04
21	GO:0042542: response to hydrogen peroxide	3.43E-04
22	GO:0032012: regulation of ARF protein signal transduction	4.92E-04
23	GO:0006954: inflammatory response	4.92E-04
24	GO:0016255: attachment of GPI anchor to protein	4.92E-04
25	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	4.92E-04
26	GO:0042780: tRNA 3'-end processing	4.92E-04
27	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	4.92E-04
28	GO:0042256: mature ribosome assembly	4.92E-04
29	GO:0051601: exocyst localization	7.04E-04
30	GO:0006882: cellular zinc ion homeostasis	7.04E-04
31	GO:0070072: vacuolar proton-transporting V-type ATPase complex assembly	7.04E-04
32	GO:0019048: modulation by virus of host morphology or physiology	7.04E-04
33	GO:0015749: monosaccharide transport	7.04E-04
34	GO:0010501: RNA secondary structure unwinding	8.26E-04
35	GO:0046323: glucose import	8.87E-04
36	GO:0006878: cellular copper ion homeostasis	9.34E-04
37	GO:0006646: phosphatidylethanolamine biosynthetic process	9.34E-04
38	GO:0009687: abscisic acid metabolic process	9.34E-04
39	GO:0015743: malate transport	9.34E-04
40	GO:0042273: ribosomal large subunit biogenesis	9.34E-04
41	GO:0048544: recognition of pollen	9.50E-04
42	GO:0042752: regulation of circadian rhythm	9.50E-04
43	GO:0018279: protein N-linked glycosylation via asparagine	1.18E-03
44	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.18E-03
45	GO:0007035: vacuolar acidification	1.45E-03
46	GO:0033962: cytoplasmic mRNA processing body assembly	1.73E-03
47	GO:0009942: longitudinal axis specification	1.73E-03
48	GO:0000911: cytokinesis by cell plate formation	1.73E-03
49	GO:0010119: regulation of stomatal movement	2.32E-03
50	GO:0010043: response to zinc ion	2.32E-03
51	GO:0009819: drought recovery	2.36E-03
52	GO:0032508: DNA duplex unwinding	2.36E-03
53	GO:0006102: isocitrate metabolic process	2.36E-03
54	GO:0007155: cell adhesion	2.36E-03
55	GO:0009061: anaerobic respiration	2.36E-03
56	GO:0045087: innate immune response	2.54E-03
57	GO:0009637: response to blue light	2.54E-03
58	GO:0001510: RNA methylation	2.69E-03
59	GO:0006367: transcription initiation from RNA polymerase II promoter	2.69E-03
60	GO:0009880: embryonic pattern specification	2.69E-03
61	GO:0060321: acceptance of pollen	2.69E-03
62	GO:0046916: cellular transition metal ion homeostasis	3.04E-03
63	GO:0009409: response to cold	3.37E-03
64	GO:0090332: stomatal closure	3.41E-03
65	GO:0006995: cellular response to nitrogen starvation	3.79E-03
66	GO:0009970: cellular response to sulfate starvation	3.79E-03
67	GO:0048765: root hair cell differentiation	4.18E-03
68	GO:0006816: calcium ion transport	4.18E-03
69	GO:0010102: lateral root morphogenesis	5.00E-03
70	GO:2000012: regulation of auxin polar transport	5.00E-03
71	GO:0010540: basipetal auxin transport	5.44E-03
72	GO:0010030: positive regulation of seed germination	5.88E-03
73	GO:0009969: xyloglucan biosynthetic process	5.88E-03
74	GO:0006406: mRNA export from nucleus	6.81E-03
75	GO:0006825: copper ion transport	7.30E-03
76	GO:0006874: cellular calcium ion homeostasis	7.30E-03
77	GO:0035428: hexose transmembrane transport	8.30E-03
78	GO:0051028: mRNA transport	9.90E-03
79	GO:0042147: retrograde transport, endosome to Golgi	9.90E-03
80	GO:0042391: regulation of membrane potential	1.04E-02
81	GO:0010087: phloem or xylem histogenesis	1.04E-02
82	GO:0015991: ATP hydrolysis coupled proton transport	1.04E-02
83	GO:0015031: protein transport	1.15E-02
84	GO:0015986: ATP synthesis coupled proton transport	1.16E-02
85	GO:0006814: sodium ion transport	1.16E-02
86	GO:0008654: phospholipid biosynthetic process	1.22E-02
87	GO:0006891: intra-Golgi vesicle-mediated transport	1.28E-02
88	GO:0010468: regulation of gene expression	1.29E-02
89	GO:0016032: viral process	1.34E-02
90	GO:0006914: autophagy	1.46E-02
91	GO:0010286: heat acclimation	1.53E-02
92	GO:0009826: unidimensional cell growth	1.61E-02
93	GO:0009651: response to salt stress	1.63E-02
94	GO:0009911: positive regulation of flower development	1.66E-02
95	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.73E-02
96	GO:0006970: response to osmotic stress	1.80E-02
97	GO:0048573: photoperiodism, flowering	1.86E-02
98	GO:0006950: response to stress	1.86E-02
99	GO:0016049: cell growth	1.93E-02
100	GO:0048481: plant ovule development	2.00E-02
101	GO:0018298: protein-chromophore linkage	2.00E-02
102	GO:0010311: lateral root formation	2.07E-02
103	GO:0080167: response to karrikin	2.07E-02
104	GO:0010218: response to far red light	2.15E-02
105	GO:0016192: vesicle-mediated transport	2.18E-02
106	GO:0016051: carbohydrate biosynthetic process	2.37E-02
107	GO:0006099: tricarboxylic acid cycle	2.45E-02
108	GO:0006886: intracellular protein transport	2.56E-02
109	GO:0030001: metal ion transport	2.60E-02
110	GO:0006887: exocytosis	2.68E-02
111	GO:0006897: endocytosis	2.68E-02
112	GO:0009744: response to sucrose	2.84E-02
113	GO:0051707: response to other organism	2.84E-02
114	GO:0009414: response to water deprivation	2.97E-02
115	GO:0006397: mRNA processing	3.19E-02
116	GO:0000165: MAPK cascade	3.25E-02
117	GO:0009846: pollen germination	3.34E-02
118	GO:0009585: red, far-red light phototransduction	3.51E-02
119	GO:0006813: potassium ion transport	3.51E-02
120	GO:0006857: oligopeptide transport	3.68E-02
121	GO:0006417: regulation of translation	3.77E-02
122	GO:0009873: ethylene-activated signaling pathway	3.94E-02
123	GO:0016569: covalent chromatin modification	4.32E-02
124	GO:0009624: response to nematode	4.51E-02
125	GO:0006396: RNA processing	4.60E-02
126	GO:0051726: regulation of cell cycle	4.70E-02
127	GO:0009908: flower development	4.88E-02
128	GO:0006810: transport	4.90E-02
129	GO:0009735: response to cytokinin	4.93E-02
130	GO:0000398: mRNA splicing, via spliceosome	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0010292: GTP:GDP antiporter activity	0.00E+00
2	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
3	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
4	GO:1990446: U1 snRNP binding	0.00E+00
5	GO:0005272: sodium channel activity	0.00E+00
6	GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity	0.00E+00
7	GO:0004576: oligosaccharyl transferase activity	1.40E-05
8	GO:0016274: protein-arginine N-methyltransferase activity	1.30E-04
9	GO:0009679: hexose:proton symporter activity	1.30E-04
10	GO:0046870: cadmium ion binding	1.30E-04
11	GO:0008446: GDP-mannose 4,6-dehydratase activity	1.30E-04
12	GO:0001047: core promoter binding	2.99E-04
13	GO:0032791: lead ion binding	2.99E-04
14	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	2.99E-04
15	GO:0004609: phosphatidylserine decarboxylase activity	2.99E-04
16	GO:0003994: aconitate hydratase activity	2.99E-04
17	GO:0004839: ubiquitin activating enzyme activity	2.99E-04
18	GO:0003923: GPI-anchor transamidase activity	2.99E-04
19	GO:0042781: 3'-tRNA processing endoribonuclease activity	4.92E-04
20	GO:0004096: catalase activity	4.92E-04
21	GO:0019829: cation-transporting ATPase activity	4.92E-04
22	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	7.04E-04
23	GO:0048027: mRNA 5'-UTR binding	7.04E-04
24	GO:0009044: xylan 1,4-beta-xylosidase activity	9.34E-04
25	GO:0005253: anion channel activity	9.34E-04
26	GO:0005086: ARF guanyl-nucleotide exchange factor activity	9.34E-04
27	GO:0003729: mRNA binding	1.05E-03
28	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.18E-03
29	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.18E-03
30	GO:0010294: abscisic acid glucosyltransferase activity	1.18E-03
31	GO:0015145: monosaccharide transmembrane transporter activity	1.18E-03
32	GO:0008641: small protein activating enzyme activity	1.18E-03
33	GO:0000293: ferric-chelate reductase activity	1.45E-03
34	GO:0031369: translation initiation factor binding	1.45E-03
35	GO:0051117: ATPase binding	1.45E-03
36	GO:0008375: acetylglucosaminyltransferase activity	1.72E-03
37	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.73E-03
38	GO:0005261: cation channel activity	1.73E-03
39	GO:0003730: mRNA 3'-UTR binding	1.73E-03
40	GO:0015140: malate transmembrane transporter activity	2.04E-03
41	GO:0009881: photoreceptor activity	2.04E-03
42	GO:0004525: ribonuclease III activity	2.36E-03
43	GO:0005337: nucleoside transmembrane transporter activity	2.36E-03
44	GO:0003697: single-stranded DNA binding	2.54E-03
45	GO:0005375: copper ion transmembrane transporter activity	2.69E-03
46	GO:0005267: potassium channel activity	2.69E-03
47	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	3.79E-03
48	GO:0015020: glucuronosyltransferase activity	3.79E-03
49	GO:0046961: proton-transporting ATPase activity, rotational mechanism	4.18E-03
50	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.00E-03
51	GO:0005262: calcium channel activity	5.00E-03
52	GO:0005217: intracellular ligand-gated ion channel activity	5.88E-03
53	GO:0004970: ionotropic glutamate receptor activity	5.88E-03
54	GO:0030552: cAMP binding	5.88E-03
55	GO:0030553: cGMP binding	5.88E-03
56	GO:0005515: protein binding	6.04E-03
57	GO:0008026: ATP-dependent helicase activity	6.59E-03
58	GO:0005216: ion channel activity	7.30E-03
59	GO:0004707: MAP kinase activity	7.79E-03
60	GO:0015144: carbohydrate transmembrane transporter activity	9.32E-03
61	GO:0003727: single-stranded RNA binding	9.35E-03
62	GO:0005249: voltage-gated potassium channel activity	1.04E-02
63	GO:0030551: cyclic nucleotide binding	1.04E-02
64	GO:0005351: sugar:proton symporter activity	1.05E-02
65	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.10E-02
66	GO:0005355: glucose transmembrane transporter activity	1.16E-02
67	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.37E-02
68	GO:0004004: ATP-dependent RNA helicase activity	1.86E-02
69	GO:0005507: copper ion binding	1.97E-02
70	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.00E-02
71	GO:0050897: cobalt ion binding	2.22E-02
72	GO:0008422: beta-glucosidase activity	2.52E-02
73	GO:0000149: SNARE binding	2.52E-02
74	GO:0051539: 4 iron, 4 sulfur cluster binding	2.60E-02
75	GO:0003723: RNA binding	2.64E-02
76	GO:0004722: protein serine/threonine phosphatase activity	2.72E-02
77	GO:0005509: calcium ion binding	2.77E-02
78	GO:0005524: ATP binding	3.26E-02
79	GO:0005215: transporter activity	3.47E-02
80	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.51E-02
81	GO:0003690: double-stranded DNA binding	3.60E-02
82	GO:0015171: amino acid transmembrane transporter activity	3.77E-02
83	GO:0080043: quercetin 3-O-glucosyltransferase activity	4.23E-02
84	GO:0080044: quercetin 7-O-glucosyltransferase activity	4.23E-02
85	GO:0016874: ligase activity	4.32E-02
86	GO:0016887: ATPase activity	4.72E-02
87	GO:0004672: protein kinase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0031981: nuclear lumen	0.00E+00
2	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
3	GO:0010008: endosome membrane	6.66E-05
4	GO:0005783: endoplasmic reticulum	8.05E-05
5	GO:0016021: integral component of membrane	9.69E-05
6	GO:0012510: trans-Golgi network transport vesicle membrane	1.30E-04
7	GO:0032777: Piccolo NuA4 histone acetyltransferase complex	2.99E-04
8	GO:0005795: Golgi stack	3.67E-04
9	GO:0042765: GPI-anchor transamidase complex	4.92E-04
10	GO:0005777: peroxisome	7.38E-04
11	GO:0005776: autophagosome	9.34E-04
12	GO:0016471: vacuolar proton-transporting V-type ATPase complex	9.34E-04
13	GO:0008250: oligosaccharyltransferase complex	1.18E-03
14	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.18E-03
15	GO:0005851: eukaryotic translation initiation factor 2B complex	1.45E-03
16	GO:0000932: P-body	1.55E-03
17	GO:0009705: plant-type vacuole membrane	1.63E-03
18	GO:0005794: Golgi apparatus	1.65E-03
19	GO:0016363: nuclear matrix	1.73E-03
20	GO:0030687: preribosome, large subunit precursor	2.04E-03
21	GO:0010494: cytoplasmic stress granule	3.04E-03
22	GO:0005886: plasma membrane	3.16E-03
23	GO:0005665: DNA-directed RNA polymerase II, core complex	4.58E-03
24	GO:0009506: plasmodesma	4.79E-03
25	GO:0005578: proteinaceous extracellular matrix	5.00E-03
26	GO:0005802: trans-Golgi network	5.61E-03
27	GO:0005768: endosome	6.82E-03
28	GO:0005618: cell wall	7.20E-03
29	GO:0031410: cytoplasmic vesicle	8.30E-03
30	GO:0005744: mitochondrial inner membrane presequence translocase complex	9.35E-03
31	GO:0031965: nuclear membrane	1.22E-02
32	GO:0000145: exocyst	1.34E-02
33	GO:0005789: endoplasmic reticulum membrane	1.52E-02
34	GO:0048046: apoplast	1.87E-02
35	GO:0000325: plant-type vacuole	2.22E-02
36	GO:0000786: nucleosome	2.29E-02
37	GO:0005622: intracellular	2.60E-02
38	GO:0031902: late endosome membrane	2.68E-02
39	GO:0005856: cytoskeleton	3.08E-02
40	GO:0031966: mitochondrial membrane	3.34E-02
41	GO:0016020: membrane	3.51E-02
42	GO:0005773: vacuole	3.53E-02
43	GO:0009505: plant-type cell wall	4.04E-02
44	GO:0000139: Golgi membrane	4.44E-02