Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G39180

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032889: regulation of vacuole fusion, non-autophagic0.00E+00
2GO:0060560: developmental growth involved in morphogenesis0.00E+00
3GO:0012502: induction of programmed cell death0.00E+00
4GO:0009738: abscisic acid-activated signaling pathway3.21E-05
5GO:0016197: endosomal transport1.13E-04
6GO:0035542: regulation of SNARE complex assembly1.13E-04
7GO:0030003: cellular cation homeostasis1.13E-04
8GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process1.95E-04
9GO:0009663: plasmodesma organization1.95E-04
10GO:0032456: endocytic recycling2.85E-04
11GO:0006646: phosphatidylethanolamine biosynthetic process3.84E-04
12GO:0015743: malate transport3.84E-04
13GO:1903830: magnesium ion transmembrane transport3.84E-04
14GO:0010508: positive regulation of autophagy3.84E-04
15GO:0043097: pyrimidine nucleoside salvage4.88E-04
16GO:0006206: pyrimidine nucleobase metabolic process5.98E-04
17GO:0009737: response to abscisic acid6.47E-04
18GO:0045926: negative regulation of growth7.13E-04
19GO:0015693: magnesium ion transport8.33E-04
20GO:0010078: maintenance of root meristem identity9.57E-04
21GO:0009819: drought recovery9.57E-04
22GO:0009408: response to heat1.07E-03
23GO:0071482: cellular response to light stimulus1.09E-03
24GO:0001510: RNA methylation1.09E-03
25GO:0005982: starch metabolic process1.36E-03
26GO:0090332: stomatal closure1.36E-03
27GO:0010215: cellulose microfibril organization1.51E-03
28GO:0006816: calcium ion transport1.66E-03
29GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.81E-03
30GO:0050826: response to freezing1.98E-03
31GO:0007034: vacuolar transport2.14E-03
32GO:0007033: vacuole organization2.31E-03
33GO:0034976: response to endoplasmic reticulum stress2.49E-03
34GO:0045893: positive regulation of transcription, DNA-templated2.60E-03
35GO:0009695: jasmonic acid biosynthetic process2.85E-03
36GO:0016575: histone deacetylation2.85E-03
37GO:0006874: cellular calcium ion homeostasis2.85E-03
38GO:0006457: protein folding3.02E-03
39GO:0051260: protein homooligomerization3.04E-03
40GO:0061077: chaperone-mediated protein folding3.04E-03
41GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.43E-03
42GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.83E-03
43GO:0042147: retrograde transport, endosome to Golgi3.83E-03
44GO:0000413: protein peptidyl-prolyl isomerization4.04E-03
45GO:0000226: microtubule cytoskeleton organization4.04E-03
46GO:0006814: sodium ion transport4.47E-03
47GO:0009749: response to glucose4.68E-03
48GO:0008654: phospholipid biosynthetic process4.68E-03
49GO:0006635: fatty acid beta-oxidation4.91E-03
50GO:0006914: autophagy5.60E-03
51GO:0009788: negative regulation of abscisic acid-activated signaling pathway6.57E-03
52GO:0010029: regulation of seed germination6.57E-03
53GO:0006950: response to stress7.08E-03
54GO:0030244: cellulose biosynthetic process7.60E-03
55GO:0009817: defense response to fungus, incompatible interaction7.60E-03
56GO:0009409: response to cold7.81E-03
57GO:0006811: ion transport8.14E-03
58GO:0030001: metal ion transport9.82E-03
59GO:0006897: endocytosis1.01E-02
60GO:0042542: response to hydrogen peroxide1.04E-02
61GO:0009644: response to high light intensity1.13E-02
62GO:0042538: hyperosmotic salinity response1.26E-02
63GO:0006813: potassium ion transport1.32E-02
64GO:0009416: response to light stimulus1.37E-02
65GO:0009058: biosynthetic process2.07E-02
66GO:0009845: seed germination2.10E-02
67GO:0006633: fatty acid biosynthetic process2.34E-02
68GO:0040008: regulation of growth2.42E-02
69GO:0010228: vegetative to reproductive phase transition of meristem2.59E-02
70GO:0009739: response to gibberellin2.71E-02
71GO:0009414: response to water deprivation2.71E-02
72GO:0006470: protein dephosphorylation2.75E-02
73GO:0009617: response to bacterium2.84E-02
74GO:0045944: positive regulation of transcription from RNA polymerase II promoter3.23E-02
75GO:0009826: unidimensional cell growth3.32E-02
76GO:0015031: protein transport3.52E-02
77GO:0006970: response to osmotic stress3.60E-02
78GO:0007049: cell cycle3.69E-02
79GO:0016192: vesicle-mediated transport4.13E-02
80GO:0045454: cell redox homeostasis4.52E-02
81GO:0006886: intracellular protein transport4.63E-02
RankGO TermAdjusted P value
1GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
2GO:0005272: sodium channel activity0.00E+00
3GO:0008692: 3-hydroxybutyryl-CoA epimerase activity4.60E-05
4GO:0004609: phosphatidylserine decarboxylase activity1.13E-04
5GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity1.13E-04
6GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding1.13E-04
7GO:0004180: carboxypeptidase activity1.95E-04
8GO:0004165: dodecenoyl-CoA delta-isomerase activity2.85E-04
9GO:0004300: enoyl-CoA hydratase activity2.85E-04
10GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity2.85E-04
11GO:0005253: anion channel activity3.84E-04
12GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.88E-04
13GO:2001070: starch binding5.98E-04
14GO:0004849: uridine kinase activity7.13E-04
15GO:0005261: cation channel activity7.13E-04
16GO:0015140: malate transmembrane transporter activity8.33E-04
17GO:0005509: calcium ion binding8.66E-04
18GO:0005267: potassium channel activity1.09E-03
19GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.09E-03
20GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.22E-03
21GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity1.51E-03
22GO:0015095: magnesium ion transmembrane transporter activity1.98E-03
23GO:0005262: calcium channel activity1.98E-03
24GO:0004970: ionotropic glutamate receptor activity2.31E-03
25GO:0005217: intracellular ligand-gated ion channel activity2.31E-03
26GO:0004407: histone deacetylase activity2.67E-03
27GO:0051087: chaperone binding2.85E-03
28GO:0043424: protein histidine kinase binding2.85E-03
29GO:0043565: sequence-specific DNA binding2.98E-03
30GO:0019706: protein-cysteine S-palmitoyltransferase activity3.04E-03
31GO:0003756: protein disulfide isomerase activity3.63E-03
32GO:0046873: metal ion transmembrane transporter activity4.25E-03
33GO:0004722: protein serine/threonine phosphatase activity6.83E-03
34GO:0008236: serine-type peptidase activity7.34E-03
35GO:0005198: structural molecule activity1.16E-02
36GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.19E-02
37GO:0003779: actin binding1.66E-02
38GO:0005516: calmodulin binding2.06E-02
39GO:0008565: protein transporter activity2.26E-02
40GO:0016757: transferase activity, transferring glycosyl groups2.51E-02
41GO:0044212: transcription regulatory region DNA binding2.77E-02
42GO:0003824: catalytic activity3.04E-02
43GO:0008168: methyltransferase activity3.32E-02
44GO:0003682: chromatin binding3.55E-02
RankGO TermAdjusted P value
1GO:0043036: starch grain1.13E-04
2GO:0030897: HOPS complex1.13E-04
3GO:0005768: endosome1.27E-04
4GO:0000815: ESCRT III complex7.13E-04
5GO:0010008: endosome membrane1.38E-03
6GO:0005765: lysosomal membrane1.66E-03
7GO:0043234: protein complex2.49E-03
8GO:0009705: plant-type vacuole membrane2.74E-03
9GO:0031902: late endosome membrane1.01E-02
10GO:0009506: plasmodesma1.56E-02
11GO:0005834: heterotrimeric G-protein complex1.56E-02
12GO:0005783: endoplasmic reticulum1.84E-02
13GO:0009543: chloroplast thylakoid lumen1.99E-02
14GO:0016021: integral component of membrane2.16E-02
15GO:0005802: trans-Golgi network2.19E-02
16GO:0009505: plant-type cell wall3.47E-02
17GO:0080008: Cul4-RING E3 ubiquitin ligase complex3.65E-02
18GO:0000139: Golgi membrane3.75E-02
Gene type



Gene DE type