GO Enrichment Analysis of Co-expressed Genes with
AT4G39040
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 2 | GO:0090391: granum assembly | 5.35E-07 |
| 3 | GO:1901259: chloroplast rRNA processing | 9.56E-06 |
| 4 | GO:0010196: nonphotochemical quenching | 1.32E-05 |
| 5 | GO:0010027: thylakoid membrane organization | 1.62E-05 |
| 6 | GO:0009451: RNA modification | 2.02E-05 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 2.13E-05 |
| 8 | GO:0034337: RNA folding | 4.74E-05 |
| 9 | GO:0015979: photosynthesis | 8.68E-05 |
| 10 | GO:0006568: tryptophan metabolic process | 1.17E-04 |
| 11 | GO:0051604: protein maturation | 2.00E-04 |
| 12 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 2.00E-04 |
| 13 | GO:2001141: regulation of RNA biosynthetic process | 2.94E-04 |
| 14 | GO:0010239: chloroplast mRNA processing | 2.94E-04 |
| 15 | GO:0010088: phloem development | 2.94E-04 |
| 16 | GO:0015994: chlorophyll metabolic process | 3.94E-04 |
| 17 | GO:0080110: sporopollenin biosynthetic process | 5.00E-04 |
| 18 | GO:0045038: protein import into chloroplast thylakoid membrane | 5.00E-04 |
| 19 | GO:0007094: mitotic spindle assembly checkpoint | 5.00E-04 |
| 20 | GO:0048280: vesicle fusion with Golgi apparatus | 7.31E-04 |
| 21 | GO:0009793: embryo development ending in seed dormancy | 8.03E-04 |
| 22 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 8.54E-04 |
| 23 | GO:0048564: photosystem I assembly | 9.81E-04 |
| 24 | GO:0045292: mRNA cis splicing, via spliceosome | 9.81E-04 |
| 25 | GO:0006353: DNA-templated transcription, termination | 9.81E-04 |
| 26 | GO:0071482: cellular response to light stimulus | 1.11E-03 |
| 27 | GO:0000373: Group II intron splicing | 1.25E-03 |
| 28 | GO:0006896: Golgi to vacuole transport | 1.55E-03 |
| 29 | GO:0006352: DNA-templated transcription, initiation | 1.70E-03 |
| 30 | GO:0051017: actin filament bundle assembly | 2.74E-03 |
| 31 | GO:0019953: sexual reproduction | 2.93E-03 |
| 32 | GO:0051321: meiotic cell cycle | 3.12E-03 |
| 33 | GO:0010584: pollen exine formation | 3.73E-03 |
| 34 | GO:0042147: retrograde transport, endosome to Golgi | 3.93E-03 |
| 35 | GO:0009658: chloroplast organization | 4.38E-03 |
| 36 | GO:0007059: chromosome segregation | 4.59E-03 |
| 37 | GO:0006623: protein targeting to vacuole | 4.81E-03 |
| 38 | GO:0006891: intra-Golgi vesicle-mediated transport | 5.04E-03 |
| 39 | GO:0006888: ER to Golgi vesicle-mediated transport | 7.28E-03 |
| 40 | GO:0007568: aging | 8.65E-03 |
| 41 | GO:0009637: response to blue light | 9.22E-03 |
| 42 | GO:0030001: metal ion transport | 1.01E-02 |
| 43 | GO:0010114: response to red light | 1.10E-02 |
| 44 | GO:0009735: response to cytokinin | 1.30E-02 |
| 45 | GO:0006857: oligopeptide transport | 1.43E-02 |
| 46 | GO:0006457: protein folding | 1.84E-02 |
| 47 | GO:0042744: hydrogen peroxide catabolic process | 2.24E-02 |
| 48 | GO:0080167: response to karrikin | 4.09E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0016851: magnesium chelatase activity | 1.30E-06 |
| 4 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 4.74E-05 |
| 5 | GO:0005528: FK506 binding | 1.14E-04 |
| 6 | GO:0016630: protochlorophyllide reductase activity | 1.17E-04 |
| 7 | GO:0047746: chlorophyllase activity | 1.17E-04 |
| 8 | GO:0000774: adenyl-nucleotide exchange factor activity | 1.17E-04 |
| 9 | GO:0051087: chaperone binding | 1.28E-04 |
| 10 | GO:0004519: endonuclease activity | 1.59E-04 |
| 11 | GO:0001053: plastid sigma factor activity | 3.94E-04 |
| 12 | GO:0016987: sigma factor activity | 3.94E-04 |
| 13 | GO:0003723: RNA binding | 4.95E-04 |
| 14 | GO:0003959: NADPH dehydrogenase activity | 5.00E-04 |
| 15 | GO:0016787: hydrolase activity | 7.02E-04 |
| 16 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 7.31E-04 |
| 17 | GO:0042803: protein homodimerization activity | 9.18E-04 |
| 18 | GO:0043621: protein self-association | 9.62E-04 |
| 19 | GO:0008312: 7S RNA binding | 9.81E-04 |
| 20 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.03E-03 |
| 21 | GO:0019843: rRNA binding | 2.07E-03 |
| 22 | GO:0005507: copper ion binding | 3.59E-03 |
| 23 | GO:0008080: N-acetyltransferase activity | 4.37E-03 |
| 24 | GO:0050662: coenzyme binding | 4.59E-03 |
| 25 | GO:0051015: actin filament binding | 5.52E-03 |
| 26 | GO:0008236: serine-type peptidase activity | 7.54E-03 |
| 27 | GO:0016491: oxidoreductase activity | 7.94E-03 |
| 28 | GO:0009055: electron carrier activity | 8.58E-03 |
| 29 | GO:0000149: SNARE binding | 9.80E-03 |
| 30 | GO:0005484: SNAP receptor activity | 1.10E-02 |
| 31 | GO:0016887: ATPase activity | 1.24E-02 |
| 32 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 1.36E-02 |
| 33 | GO:0016298: lipase activity | 1.39E-02 |
| 34 | GO:0051082: unfolded protein binding | 1.75E-02 |
| 35 | GO:0016746: transferase activity, transferring acyl groups | 1.78E-02 |
| 36 | GO:0008565: protein transporter activity | 2.33E-02 |
| 37 | GO:0005509: calcium ion binding | 2.66E-02 |
| 38 | GO:0008168: methyltransferase activity | 3.42E-02 |
| 39 | GO:0004601: peroxidase activity | 3.51E-02 |
| 40 | GO:0016788: hydrolase activity, acting on ester bonds | 3.56E-02 |
| 41 | GO:0008233: peptidase activity | 4.04E-02 |
| 42 | GO:0003729: mRNA binding | 4.28E-02 |
| 43 | GO:0052689: carboxylic ester hydrolase activity | 4.40E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.03E-18 |
| 3 | GO:0009534: chloroplast thylakoid | 3.55E-10 |
| 4 | GO:0009570: chloroplast stroma | 6.17E-10 |
| 5 | GO:0010007: magnesium chelatase complex | 5.35E-07 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 1.65E-06 |
| 7 | GO:0009941: chloroplast envelope | 2.60E-06 |
| 8 | GO:0009579: thylakoid | 4.20E-06 |
| 9 | GO:0009543: chloroplast thylakoid lumen | 9.99E-06 |
| 10 | GO:0031977: thylakoid lumen | 4.82E-05 |
| 11 | GO:0080085: signal recognition particle, chloroplast targeting | 1.17E-04 |
| 12 | GO:0043231: intracellular membrane-bounded organelle | 1.62E-04 |
| 13 | GO:0009526: plastid envelope | 3.94E-04 |
| 14 | GO:0005828: kinetochore microtubule | 3.94E-04 |
| 15 | GO:0000776: kinetochore | 5.00E-04 |
| 16 | GO:0055035: plastid thylakoid membrane | 5.00E-04 |
| 17 | GO:0000777: condensed chromosome kinetochore | 7.31E-04 |
| 18 | GO:0012507: ER to Golgi transport vesicle membrane | 9.81E-04 |
| 19 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 1.11E-03 |
| 20 | GO:0005876: spindle microtubule | 1.40E-03 |
| 21 | GO:0032040: small-subunit processome | 1.86E-03 |
| 22 | GO:0005759: mitochondrial matrix | 2.60E-03 |
| 23 | GO:0009654: photosystem II oxygen evolving complex | 2.93E-03 |
| 24 | GO:0015629: actin cytoskeleton | 3.52E-03 |
| 25 | GO:0019898: extrinsic component of membrane | 4.81E-03 |
| 26 | GO:0031902: late endosome membrane | 1.04E-02 |
| 27 | GO:0031201: SNARE complex | 1.04E-02 |
| 28 | GO:0005856: cytoskeleton | 1.20E-02 |
| 29 | GO:0009706: chloroplast inner membrane | 1.75E-02 |
| 30 | GO:0009524: phragmoplast | 2.13E-02 |
| 31 | GO:0009705: plant-type vacuole membrane | 2.57E-02 |
| 32 | GO:0046658: anchored component of plasma membrane | 3.14E-02 |
| 33 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 3.75E-02 |
| 34 | GO:0031969: chloroplast membrane | 4.09E-02 |