Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G38890

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0030644: cellular chloride ion homeostasis0.00E+00
2GO:0005997: xylulose metabolic process0.00E+00
3GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
4GO:0043171: peptide catabolic process0.00E+00
5GO:0042906: xanthine transport0.00E+00
6GO:0010219: regulation of vernalization response0.00E+00
7GO:0010378: temperature compensation of the circadian clock0.00E+00
8GO:0009409: response to cold6.99E-07
9GO:0009768: photosynthesis, light harvesting in photosystem I1.20E-06
10GO:0009645: response to low light intensity stimulus1.67E-06
11GO:0018298: protein-chromophore linkage2.76E-05
12GO:0010218: response to far red light3.36E-05
13GO:0000380: alternative mRNA splicing, via spliceosome4.37E-05
14GO:0007623: circadian rhythm7.05E-05
15GO:0009644: response to high light intensity8.27E-05
16GO:0009769: photosynthesis, light harvesting in photosystem II1.20E-04
17GO:0015812: gamma-aminobutyric acid transport1.91E-04
18GO:0032958: inositol phosphate biosynthetic process1.91E-04
19GO:0006369: termination of RNA polymerase II transcription1.91E-04
20GO:1900060: negative regulation of ceramide biosynthetic process1.91E-04
21GO:1990641: response to iron ion starvation1.91E-04
22GO:1902265: abscisic acid homeostasis1.91E-04
23GO:0010286: heat acclimation2.30E-04
24GO:0009416: response to light stimulus3.43E-04
25GO:0090156: cellular sphingolipid homeostasis4.29E-04
26GO:0015720: allantoin transport4.29E-04
27GO:0006883: cellular sodium ion homeostasis4.29E-04
28GO:0048833: specification of floral organ number4.29E-04
29GO:0015857: uracil transport4.29E-04
30GO:1902884: positive regulation of response to oxidative stress4.29E-04
31GO:0051170: nuclear import4.29E-04
32GO:0006101: citrate metabolic process4.29E-04
33GO:0042542: response to hydrogen peroxide6.82E-04
34GO:0071705: nitrogen compound transport6.99E-04
35GO:1901562: response to paraquat6.99E-04
36GO:0042256: mature ribosome assembly6.99E-04
37GO:0042344: indole glucosinolate catabolic process6.99E-04
38GO:0006954: inflammatory response6.99E-04
39GO:0006598: polyamine catabolic process6.99E-04
40GO:0010114: response to red light7.18E-04
41GO:0048511: rhythmic process9.21E-04
42GO:1901332: negative regulation of lateral root development9.97E-04
43GO:0006020: inositol metabolic process9.97E-04
44GO:0010601: positive regulation of auxin biosynthetic process9.97E-04
45GO:0015749: monosaccharide transport9.97E-04
46GO:0071215: cellular response to abscisic acid stimulus1.09E-03
47GO:0006646: phosphatidylethanolamine biosynthetic process1.32E-03
48GO:0009687: abscisic acid metabolic process1.32E-03
49GO:0015743: malate transport1.32E-03
50GO:0048442: sepal development1.32E-03
51GO:0009765: photosynthesis, light harvesting1.32E-03
52GO:0010600: regulation of auxin biosynthetic process1.32E-03
53GO:1901002: positive regulation of response to salt stress1.32E-03
54GO:0030104: water homeostasis1.32E-03
55GO:0080167: response to karrikin1.45E-03
56GO:0035556: intracellular signal transduction1.65E-03
57GO:0043097: pyrimidine nucleoside salvage1.68E-03
58GO:0048578: positive regulation of long-day photoperiodism, flowering1.68E-03
59GO:0015979: photosynthesis1.77E-03
60GO:0007165: signal transduction1.87E-03
61GO:0045892: negative regulation of transcription, DNA-templated1.95E-03
62GO:0009737: response to abscisic acid1.97E-03
63GO:0042732: D-xylose metabolic process2.07E-03
64GO:0045040: protein import into mitochondrial outer membrane2.07E-03
65GO:0006206: pyrimidine nucleobase metabolic process2.07E-03
66GO:0000741: karyogamy2.07E-03
67GO:0019760: glucosinolate metabolic process2.21E-03
68GO:0009861: jasmonic acid and ethylene-dependent systemic resistance2.49E-03
69GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.49E-03
70GO:0010038: response to metal ion2.93E-03
71GO:0010044: response to aluminum ion2.93E-03
72GO:0048437: floral organ development2.93E-03
73GO:0006950: response to stress3.09E-03
74GO:0009415: response to water3.40E-03
75GO:0032508: DNA duplex unwinding3.40E-03
76GO:0006102: isocitrate metabolic process3.40E-03
77GO:0009061: anaerobic respiration3.40E-03
78GO:0010928: regulation of auxin mediated signaling pathway3.40E-03
79GO:0009819: drought recovery3.40E-03
80GO:0009817: defense response to fungus, incompatible interaction3.42E-03
81GO:0000160: phosphorelay signal transduction system3.59E-03
82GO:0010099: regulation of photomorphogenesis3.88E-03
83GO:0009827: plant-type cell wall modification3.88E-03
84GO:0001510: RNA methylation3.88E-03
85GO:0010043: response to zinc ion3.95E-03
86GO:0009637: response to blue light4.33E-03
87GO:0045087: innate immune response4.33E-03
88GO:0046916: cellular transition metal ion homeostasis4.40E-03
89GO:0006098: pentose-phosphate shunt4.40E-03
90GO:0090333: regulation of stomatal closure4.40E-03
91GO:0048354: mucilage biosynthetic process involved in seed coat development4.93E-03
92GO:0009414: response to water deprivation4.96E-03
93GO:0009641: shade avoidance5.48E-03
94GO:0009970: cellular response to sulfate starvation5.48E-03
95GO:0055062: phosphate ion homeostasis5.48E-03
96GO:0006995: cellular response to nitrogen starvation5.48E-03
97GO:0048441: petal development5.48E-03
98GO:0008643: carbohydrate transport6.02E-03
99GO:0030148: sphingolipid biosynthetic process6.06E-03
100GO:0009682: induced systemic resistance6.06E-03
101GO:0052544: defense response by callose deposition in cell wall6.06E-03
102GO:0006970: response to osmotic stress6.17E-03
103GO:0016925: protein sumoylation6.66E-03
104GO:0000165: MAPK cascade6.74E-03
105GO:0006626: protein targeting to mitochondrion7.28E-03
106GO:0050826: response to freezing7.28E-03
107GO:0009718: anthocyanin-containing compound biosynthetic process7.28E-03
108GO:0009585: red, far-red light phototransduction7.50E-03
109GO:0009266: response to temperature stimulus7.91E-03
110GO:0048440: carpel development7.91E-03
111GO:0007034: vacuolar transport7.91E-03
112GO:0010030: positive regulation of seed germination8.57E-03
113GO:0019853: L-ascorbic acid biosynthetic process8.57E-03
114GO:0034976: response to endoplasmic reticulum stress9.25E-03
115GO:0006406: mRNA export from nucleus9.94E-03
116GO:0005975: carbohydrate metabolic process1.07E-02
117GO:0016575: histone deacetylation1.07E-02
118GO:0009695: jasmonic acid biosynthetic process1.07E-02
119GO:0003333: amino acid transmembrane transport1.14E-02
120GO:0010431: seed maturation1.14E-02
121GO:0009269: response to desiccation1.14E-02
122GO:0019748: secondary metabolic process1.21E-02
123GO:0010017: red or far-red light signaling pathway1.21E-02
124GO:0009408: response to heat1.21E-02
125GO:0006012: galactose metabolic process1.29E-02
126GO:0009693: ethylene biosynthetic process1.29E-02
127GO:0048443: stamen development1.37E-02
128GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.45E-02
129GO:0009651: response to salt stress1.51E-02
130GO:0080022: primary root development1.53E-02
131GO:0010501: RNA secondary structure unwinding1.53E-02
132GO:0042631: cellular response to water deprivation1.53E-02
133GO:0042391: regulation of membrane potential1.53E-02
134GO:0010197: polar nucleus fusion1.62E-02
135GO:0046323: glucose import1.62E-02
136GO:0006814: sodium ion transport1.70E-02
137GO:0042752: regulation of circadian rhythm1.70E-02
138GO:0008654: phospholipid biosynthetic process1.79E-02
139GO:0009556: microsporogenesis1.79E-02
140GO:0006635: fatty acid beta-oxidation1.88E-02
141GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.88E-02
142GO:1901657: glycosyl compound metabolic process2.06E-02
143GO:0009617: response to bacterium2.22E-02
144GO:0010468: regulation of gene expression2.22E-02
145GO:0009735: response to cytokinin2.24E-02
146GO:0010029: regulation of seed germination2.54E-02
147GO:0048573: photoperiodism, flowering2.74E-02
148GO:0015995: chlorophyll biosynthetic process2.74E-02
149GO:0006355: regulation of transcription, DNA-templated3.16E-02
150GO:0006811: ion transport3.16E-02
151GO:0010119: regulation of stomatal movement3.27E-02
152GO:0009631: cold acclimation3.27E-02
153GO:0055085: transmembrane transport3.36E-02
154GO:0006099: tricarboxylic acid cycle3.60E-02
155GO:0030001: metal ion transport3.83E-02
156GO:0006952: defense response3.86E-02
157GO:0044550: secondary metabolite biosynthetic process3.87E-02
158GO:0009640: photomorphogenesis4.18E-02
159GO:0009926: auxin polar transport4.18E-02
160GO:0051707: response to other organism4.18E-02
161GO:0006812: cation transport4.90E-02
162GO:0042538: hyperosmotic salinity response4.90E-02
RankGO TermAdjusted P value
1GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
2GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity0.00E+00
3GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
4GO:0047668: amygdalin beta-glucosidase activity0.00E+00
5GO:0080083: beta-gentiobiose beta-glucosidase activity0.00E+00
6GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
7GO:0042907: xanthine transmembrane transporter activity0.00E+00
8GO:0010349: L-galactose dehydrogenase activity0.00E+00
9GO:0009045: xylose isomerase activity0.00E+00
10GO:0080082: esculin beta-glucosidase activity0.00E+00
11GO:0004567: beta-mannosidase activity0.00E+00
12GO:0031409: pigment binding7.41E-07
13GO:0016168: chlorophyll binding1.80E-05
14GO:0005253: anion channel activity2.72E-05
15GO:0015185: gamma-aminobutyric acid transmembrane transporter activity1.91E-04
16GO:0033857: diphosphoinositol-pentakisphosphate kinase activity1.91E-04
17GO:0009679: hexose:proton symporter activity1.91E-04
18GO:0000829: inositol heptakisphosphate kinase activity1.91E-04
19GO:0010013: N-1-naphthylphthalamic acid binding1.91E-04
20GO:0080079: cellobiose glucosidase activity1.91E-04
21GO:0008692: 3-hydroxybutyryl-CoA epimerase activity1.91E-04
22GO:0046870: cadmium ion binding1.91E-04
23GO:0000828: inositol hexakisphosphate kinase activity1.91E-04
24GO:0004856: xylulokinase activity1.91E-04
25GO:0070006: metalloaminopeptidase activity1.91E-04
26GO:0004177: aminopeptidase activity3.78E-04
27GO:0015180: L-alanine transmembrane transporter activity4.29E-04
28GO:0032791: lead ion binding4.29E-04
29GO:0005274: allantoin uptake transmembrane transporter activity4.29E-04
30GO:0004609: phosphatidylserine decarboxylase activity4.29E-04
31GO:0003994: aconitate hydratase activity4.29E-04
32GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity4.29E-04
33GO:0004839: ubiquitin activating enzyme activity4.29E-04
34GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity4.29E-04
35GO:0004096: catalase activity6.99E-04
36GO:0046592: polyamine oxidase activity6.99E-04
37GO:0019948: SUMO activating enzyme activity6.99E-04
38GO:0004707: MAP kinase activity9.21E-04
39GO:0004165: dodecenoyl-CoA delta-isomerase activity9.97E-04
40GO:0004300: enoyl-CoA hydratase activity9.97E-04
41GO:0015189: L-lysine transmembrane transporter activity9.97E-04
42GO:0048027: mRNA 5'-UTR binding9.97E-04
43GO:0015181: arginine transmembrane transporter activity9.97E-04
44GO:0042277: peptide binding1.32E-03
45GO:0015210: uracil transmembrane transporter activity1.32E-03
46GO:0005313: L-glutamate transmembrane transporter activity1.32E-03
47GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen1.68E-03
48GO:0010294: abscisic acid glucosyltransferase activity1.68E-03
49GO:0015145: monosaccharide transmembrane transporter activity1.68E-03
50GO:0008641: small protein activating enzyme activity1.68E-03
51GO:0016773: phosphotransferase activity, alcohol group as acceptor1.68E-03
52GO:0045300: acyl-[acyl-carrier-protein] desaturase activity1.68E-03
53GO:0000156: phosphorelay response regulator activity2.07E-03
54GO:0005247: voltage-gated chloride channel activity2.07E-03
55GO:0004629: phospholipase C activity2.07E-03
56GO:0015562: efflux transmembrane transporter activity2.07E-03
57GO:0000293: ferric-chelate reductase activity2.07E-03
58GO:0019137: thioglucosidase activity2.07E-03
59GO:0004435: phosphatidylinositol phospholipase C activity2.49E-03
60GO:0070300: phosphatidic acid binding2.49E-03
61GO:0004849: uridine kinase activity2.49E-03
62GO:0015140: malate transmembrane transporter activity2.93E-03
63GO:0102483: scopolin beta-glucosidase activity3.09E-03
64GO:0005351: sugar:proton symporter activity3.13E-03
65GO:0004525: ribonuclease III activity3.40E-03
66GO:0004033: aldo-keto reductase (NADP) activity3.40E-03
67GO:0001104: RNA polymerase II transcription cofactor activity3.88E-03
68GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)3.88E-03
69GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity4.40E-03
70GO:0000989: transcription factor activity, transcription factor binding4.40E-03
71GO:0008422: beta-glucosidase activity4.72E-03
72GO:0047372: acylglycerol lipase activity6.06E-03
73GO:0016301: kinase activity6.90E-03
74GO:0008081: phosphoric diester hydrolase activity7.28E-03
75GO:0005315: inorganic phosphate transmembrane transporter activity7.28E-03
76GO:0004565: beta-galactosidase activity7.28E-03
77GO:0008131: primary amine oxidase activity7.91E-03
78GO:0030552: cAMP binding8.57E-03
79GO:0030553: cGMP binding8.57E-03
80GO:0004407: histone deacetylase activity9.94E-03
81GO:0008270: zinc ion binding1.03E-02
82GO:0005216: ion channel activity1.07E-02
83GO:0008324: cation transmembrane transporter activity1.07E-02
84GO:0019706: protein-cysteine S-palmitoyltransferase activity1.14E-02
85GO:0008514: organic anion transmembrane transporter activity1.37E-02
86GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.38E-02
87GO:0005249: voltage-gated potassium channel activity1.53E-02
88GO:0030551: cyclic nucleotide binding1.53E-02
89GO:0015144: carbohydrate transmembrane transporter activity1.61E-02
90GO:0015297: antiporter activity1.77E-02
91GO:0005515: protein binding2.65E-02
92GO:0030247: polysaccharide binding2.74E-02
93GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity2.95E-02
94GO:0046872: metal ion binding2.95E-02
95GO:0050897: cobalt ion binding3.27E-02
96GO:0003697: single-stranded DNA binding3.49E-02
97GO:0008233: peptidase activity3.50E-02
98GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.53E-02
99GO:0004497: monooxygenase activity3.56E-02
100GO:0051539: 4 iron, 4 sulfur cluster binding3.83E-02
101GO:0004185: serine-type carboxypeptidase activity4.18E-02
102GO:0035091: phosphatidylinositol binding4.41E-02
103GO:0015293: symporter activity4.54E-02
104GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen4.59E-02
RankGO TermAdjusted P value
1GO:0030076: light-harvesting complex5.72E-07
2GO:0009522: photosystem I5.40E-06
3GO:0016021: integral component of membrane7.41E-06
4GO:0005777: peroxisome1.23E-05
5GO:0010287: plastoglobule3.02E-05
6GO:0009523: photosystem II1.46E-04
7GO:0035339: SPOTS complex1.91E-04
8GO:0016020: membrane3.49E-04
9GO:0005886: plasma membrane1.07E-03
10GO:0009898: cytoplasmic side of plasma membrane1.32E-03
11GO:0032586: protein storage vacuole membrane1.32E-03
12GO:0009517: PSII associated light-harvesting complex II1.32E-03
13GO:0005783: endoplasmic reticulum1.45E-03
14GO:0009579: thylakoid2.05E-03
15GO:0070847: core mediator complex2.07E-03
16GO:0005851: eukaryotic translation initiation factor 2B complex2.07E-03
17GO:0034707: chloride channel complex2.07E-03
18GO:0000815: ESCRT III complex2.49E-03
19GO:0000326: protein storage vacuole3.88E-03
20GO:0005742: mitochondrial outer membrane translocase complex3.88E-03
21GO:0031090: organelle membrane4.40E-03
22GO:0031966: mitochondrial membrane6.99E-03
23GO:0005618: cell wall7.55E-03
24GO:0009534: chloroplast thylakoid8.35E-03
25GO:0042651: thylakoid membrane1.07E-02
26GO:0009941: chloroplast envelope1.09E-02
27GO:0005741: mitochondrial outer membrane1.14E-02
28GO:0005744: mitochondrial inner membrane presequence translocase complex1.37E-02
29GO:0005773: vacuole1.41E-02
30GO:0005622: intracellular1.50E-02
31GO:0031965: nuclear membrane1.79E-02
32GO:0009705: plant-type vacuole membrane1.86E-02
33GO:0016592: mediator complex1.97E-02
34GO:0009535: chloroplast thylakoid membrane2.08E-02
35GO:0005829: cytosol3.29E-02
36GO:0000786: nucleosome3.38E-02
37GO:0009506: plasmodesma4.16E-02
38GO:0005774: vacuolar membrane4.29E-02
39GO:0048046: apoplast4.64E-02
Gene type



Gene DE type