Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G38840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0033231: carbohydrate export0.00E+00
3GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
4GO:1902334: fructose export from vacuole to cytoplasm2.53E-05
5GO:0015755: fructose transport2.53E-05
6GO:0051260: protein homooligomerization5.82E-05
7GO:0034220: ion transmembrane transport9.42E-05
8GO:0080055: low-affinity nitrate transport1.13E-04
9GO:0048825: cotyledon development1.20E-04
10GO:0051513: regulation of monopolar cell growth1.69E-04
11GO:0080170: hydrogen peroxide transmembrane transport1.69E-04
12GO:0015995: chlorophyll biosynthetic process2.28E-04
13GO:0030104: water homeostasis2.30E-04
14GO:0030007: cellular potassium ion homeostasis2.30E-04
15GO:0009823: cytokinin catabolic process2.95E-04
16GO:0009913: epidermal cell differentiation3.65E-04
17GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.65E-04
18GO:0009228: thiamine biosynthetic process3.65E-04
19GO:1900057: positive regulation of leaf senescence5.11E-04
20GO:0009772: photosynthetic electron transport in photosystem II5.11E-04
21GO:0009664: plant-type cell wall organization5.19E-04
22GO:0009690: cytokinin metabolic process5.89E-04
23GO:0010078: maintenance of root meristem identity5.89E-04
24GO:0046620: regulation of organ growth5.89E-04
25GO:0043562: cellular response to nitrogen levels6.69E-04
26GO:0010206: photosystem II repair7.52E-04
27GO:0034765: regulation of ion transmembrane transport7.52E-04
28GO:0010205: photoinhibition8.38E-04
29GO:0006995: cellular response to nitrogen starvation9.24E-04
30GO:0009750: response to fructose1.01E-03
31GO:0009684: indoleacetic acid biosynthetic process1.01E-03
32GO:0009773: photosynthetic electron transport in photosystem I1.01E-03
33GO:0010588: cotyledon vascular tissue pattern formation1.20E-03
34GO:0048467: gynoecium development1.30E-03
35GO:0010030: positive regulation of seed germination1.40E-03
36GO:0006833: water transport1.50E-03
37GO:0016114: terpenoid biosynthetic process1.83E-03
38GO:0042742: defense response to bacterium2.02E-03
39GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.06E-03
40GO:0070417: cellular response to cold2.30E-03
41GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.30E-03
42GO:0080022: primary root development2.42E-03
43GO:0010087: phloem or xylem histogenesis2.42E-03
44GO:0042631: cellular response to water deprivation2.42E-03
45GO:0009958: positive gravitropism2.55E-03
46GO:0009646: response to absence of light2.68E-03
47GO:0009851: auxin biosynthetic process2.80E-03
48GO:0015979: photosynthesis2.80E-03
49GO:0016032: viral process3.07E-03
50GO:0009828: plant-type cell wall loosening3.34E-03
51GO:0071805: potassium ion transmembrane transport3.48E-03
52GO:0010029: regulation of seed germination3.91E-03
53GO:0048527: lateral root development4.99E-03
54GO:0010119: regulation of stomatal movement4.99E-03
55GO:0009734: auxin-activated signaling pathway5.06E-03
56GO:0009926: auxin polar transport6.32E-03
57GO:0006857: oligopeptide transport8.16E-03
58GO:0048367: shoot system development8.93E-03
59GO:0009624: response to nematode9.95E-03
60GO:0009845: seed germination1.23E-02
61GO:0009733: response to auxin1.45E-02
62GO:0007623: circadian rhythm1.46E-02
63GO:0045490: pectin catabolic process1.46E-02
64GO:0007166: cell surface receptor signaling pathway1.61E-02
65GO:0006810: transport1.90E-02
66GO:0009826: unidimensional cell growth1.94E-02
67GO:0009723: response to ethylene2.21E-02
68GO:0080167: response to karrikin2.32E-02
69GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.38E-02
70GO:0007275: multicellular organism development2.55E-02
71GO:0045454: cell redox homeostasis2.64E-02
72GO:0006468: protein phosphorylation2.68E-02
73GO:0006869: lipid transport2.82E-02
74GO:0032259: methylation2.98E-02
75GO:0016042: lipid catabolic process3.01E-02
76GO:0016567: protein ubiquitination3.94E-02
77GO:0009908: flower development4.30E-02
78GO:0009651: response to salt stress4.34E-02
RankGO TermAdjusted P value
1GO:0015284: fructose uniporter activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0015269: calcium-activated potassium channel activity0.00E+00
4GO:0080097: L-tryptophan:pyruvate aminotransferase activity6.44E-05
5GO:0005353: fructose transmembrane transporter activity6.44E-05
6GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity6.44E-05
7GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity6.44E-05
8GO:0090729: toxin activity1.13E-04
9GO:0080054: low-affinity nitrate transmembrane transporter activity1.13E-04
10GO:0015250: water channel activity1.93E-04
11GO:0016846: carbon-sulfur lyase activity2.95E-04
12GO:0019139: cytokinin dehydrogenase activity2.95E-04
13GO:0015271: outward rectifier potassium channel activity3.65E-04
14GO:0005267: potassium channel activity6.69E-04
15GO:0031072: heat shock protein binding1.20E-03
16GO:0008131: primary amine oxidase activity1.30E-03
17GO:0051119: sugar transmembrane transporter activity1.40E-03
18GO:0005216: ion channel activity1.72E-03
19GO:0030570: pectate lyase activity2.06E-03
20GO:0003756: protein disulfide isomerase activity2.18E-03
21GO:0016168: chlorophyll binding3.91E-03
22GO:0005096: GTPase activator activity4.67E-03
23GO:0030145: manganese ion binding4.99E-03
24GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.99E-03
25GO:0008289: lipid binding5.00E-03
26GO:0004712: protein serine/threonine/tyrosine kinase activity5.64E-03
27GO:0003779: actin binding9.74E-03
28GO:0051082: unfolded protein binding9.95E-03
29GO:0016829: lyase activity1.23E-02
30GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.39E-02
31GO:0042802: identical protein binding1.73E-02
32GO:0016788: hydrolase activity, acting on ester bonds2.02E-02
33GO:0050660: flavin adenine dinucleotide binding2.21E-02
34GO:0052689: carboxylic ester hydrolase activity2.50E-02
RankGO TermAdjusted P value
1GO:0009534: chloroplast thylakoid8.44E-06
2GO:0009535: chloroplast thylakoid membrane1.72E-05
3GO:0043674: columella2.53E-05
4GO:0030093: chloroplast photosystem I6.44E-05
5GO:0009531: secondary cell wall1.69E-04
6GO:0042807: central vacuole5.11E-04
7GO:0009533: chloroplast stromal thylakoid5.11E-04
8GO:0008180: COP9 signalosome7.52E-04
9GO:0009508: plastid chromosome1.20E-03
10GO:0009705: plant-type vacuole membrane1.30E-03
11GO:0030095: chloroplast photosystem II1.30E-03
12GO:0016021: integral component of membrane2.44E-03
13GO:0009522: photosystem I2.68E-03
14GO:0009523: photosystem II2.80E-03
15GO:0009295: nucleoid3.48E-03
16GO:0019005: SCF ubiquitin ligase complex4.52E-03
17GO:0005887: integral component of plasma membrane4.88E-03
18GO:0016020: membrane5.22E-03
19GO:0005886: plasma membrane6.24E-03
20GO:0009579: thylakoid7.61E-03
21GO:0000502: proteasome complex7.78E-03
22GO:0005623: cell1.19E-02
23GO:0009941: chloroplast envelope1.43E-02
24GO:0005615: extracellular space1.58E-02
25GO:0009570: chloroplast stroma2.18E-02
26GO:0031969: chloroplast membrane2.32E-02
27GO:0005774: vacuolar membrane4.47E-02
Gene type



Gene DE type