co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38770

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0033494: ferulate metabolic process	0.00E+00
3	GO:0016553: base conversion or substitution editing	0.00E+00
4	GO:0042493: response to drug	0.00E+00
5	GO:0006412: translation	2.20E-11
6	GO:0032544: plastid translation	1.12E-08
7	GO:0042254: ribosome biogenesis	3.21E-07
8	GO:0015976: carbon utilization	1.55E-05
9	GO:0045454: cell redox homeostasis	1.65E-05
10	GO:0042742: defense response to bacterium	1.75E-05
11	GO:0000413: protein peptidyl-prolyl isomerization	5.38E-05
12	GO:0071588: hydrogen peroxide mediated signaling pathway	1.37E-04
13	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	1.37E-04
14	GO:0006434: seryl-tRNA aminoacylation	1.37E-04
15	GO:0060627: regulation of vesicle-mediated transport	1.37E-04
16	GO:0043489: RNA stabilization	1.37E-04
17	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	1.37E-04
18	GO:0010442: guard cell morphogenesis	1.37E-04
19	GO:0043039: tRNA aminoacylation	3.16E-04
20	GO:0052541: plant-type cell wall cellulose metabolic process	3.16E-04
21	GO:0006518: peptide metabolic process	5.20E-04
22	GO:0009658: chloroplast organization	5.26E-04
23	GO:0009650: UV protection	7.44E-04
24	GO:0009956: radial pattern formation	9.85E-04
25	GO:2000122: negative regulation of stomatal complex development	9.85E-04
26	GO:0010037: response to carbon dioxide	9.85E-04
27	GO:0009409: response to cold	1.03E-03
28	GO:0006869: lipid transport	1.09E-03
29	GO:0048359: mucilage metabolic process involved in seed coat development	1.25E-03
30	GO:0010236: plastoquinone biosynthetic process	1.25E-03
31	GO:0042549: photosystem II stabilization	1.53E-03
32	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.53E-03
33	GO:0010027: thylakoid membrane organization	1.68E-03
34	GO:0010019: chloroplast-nucleus signaling pathway	1.83E-03
35	GO:0048444: floral organ morphogenesis	1.83E-03
36	GO:0010555: response to mannitol	1.83E-03
37	GO:0009955: adaxial/abaxial pattern specification	1.83E-03
38	GO:1901259: chloroplast rRNA processing	1.83E-03
39	GO:0006694: steroid biosynthetic process	1.83E-03
40	GO:0010189: vitamin E biosynthetic process	1.83E-03
41	GO:0009395: phospholipid catabolic process	2.15E-03
42	GO:0010196: nonphotochemical quenching	2.15E-03
43	GO:0009817: defense response to fungus, incompatible interaction	2.18E-03
44	GO:0009642: response to light intensity	2.49E-03
45	GO:0030091: protein repair	2.49E-03
46	GO:0000028: ribosomal small subunit assembly	2.49E-03
47	GO:0007568: aging	2.51E-03
48	GO:0009631: cold acclimation	2.51E-03
49	GO:0009735: response to cytokinin	2.72E-03
50	GO:0009808: lignin metabolic process	2.85E-03
51	GO:0006526: arginine biosynthetic process	2.85E-03
52	GO:0034599: cellular response to oxidative stress	2.87E-03
53	GO:0015780: nucleotide-sugar transport	3.22E-03
54	GO:0006949: syncytium formation	4.00E-03
55	GO:0055114: oxidation-reduction process	4.38E-03
56	GO:0010015: root morphogenesis	4.42E-03
57	GO:0043085: positive regulation of catalytic activity	4.42E-03
58	GO:0018119: peptidyl-cysteine S-nitrosylation	4.42E-03
59	GO:0006820: anion transport	4.85E-03
60	GO:0015979: photosynthesis	4.87E-03
61	GO:0009725: response to hormone	5.30E-03
62	GO:0006006: glucose metabolic process	5.30E-03
63	GO:0009934: regulation of meristem structural organization	5.76E-03
64	GO:0010143: cutin biosynthetic process	5.76E-03
65	GO:0009933: meristem structural organization	5.76E-03
66	GO:0019253: reductive pentose-phosphate cycle	5.76E-03
67	GO:0010207: photosystem II assembly	5.76E-03
68	GO:0006071: glycerol metabolic process	6.71E-03
69	GO:0019344: cysteine biosynthetic process	7.22E-03
70	GO:0000027: ribosomal large subunit assembly	7.22E-03
71	GO:0051302: regulation of cell division	7.73E-03
72	GO:0010026: trichome differentiation	7.73E-03
73	GO:0009768: photosynthesis, light harvesting in photosystem I	7.73E-03
74	GO:0061077: chaperone-mediated protein folding	8.26E-03
75	GO:0007005: mitochondrion organization	8.79E-03
76	GO:0071555: cell wall organization	9.08E-03
77	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.35E-03
78	GO:0009411: response to UV	9.35E-03
79	GO:0009790: embryo development	9.88E-03
80	GO:0019722: calcium-mediated signaling	9.92E-03
81	GO:0009306: protein secretion	9.92E-03
82	GO:0042335: cuticle development	1.11E-02
83	GO:0045490: pectin catabolic process	1.17E-02
84	GO:0010305: leaf vascular tissue pattern formation	1.17E-02
85	GO:0006520: cellular amino acid metabolic process	1.17E-02
86	GO:0006662: glycerol ether metabolic process	1.17E-02
87	GO:0009451: RNA modification	1.20E-02
88	GO:0016132: brassinosteroid biosynthetic process	1.36E-02
89	GO:0002229: defense response to oomycetes	1.36E-02
90	GO:0000302: response to reactive oxygen species	1.36E-02
91	GO:0009828: plant-type cell wall loosening	1.55E-02
92	GO:0007267: cell-cell signaling	1.62E-02
93	GO:0009826: unidimensional cell growth	1.75E-02
94	GO:0006457: protein folding	1.94E-02
95	GO:0015995: chlorophyll biosynthetic process	1.98E-02
96	GO:0010411: xyloglucan metabolic process	1.98E-02
97	GO:0048481: plant ovule development	2.12E-02
98	GO:0018298: protein-chromophore linkage	2.12E-02
99	GO:0009834: plant-type secondary cell wall biogenesis	2.28E-02
100	GO:0009407: toxin catabolic process	2.28E-02
101	GO:0010218: response to far red light	2.28E-02
102	GO:0010119: regulation of stomatal movement	2.36E-02
103	GO:0009637: response to blue light	2.51E-02
104	GO:0045087: innate immune response	2.51E-02
105	GO:0007165: signal transduction	2.72E-02
106	GO:0010114: response to red light	3.01E-02
107	GO:0009744: response to sucrose	3.01E-02
108	GO:0042546: cell wall biogenesis	3.10E-02
109	GO:0009793: embryo development ending in seed dormancy	3.18E-02
110	GO:0008643: carbohydrate transport	3.19E-02
111	GO:0016042: lipid catabolic process	3.23E-02
112	GO:0009636: response to toxic substance	3.27E-02
113	GO:0006979: response to oxidative stress	3.43E-02
114	GO:0009664: plant-type cell wall organization	3.54E-02
115	GO:0042538: hyperosmotic salinity response	3.54E-02
116	GO:0009809: lignin biosynthetic process	3.72E-02
117	GO:0006813: potassium ion transport	3.72E-02
118	GO:0006096: glycolytic process	4.19E-02
119	GO:0009740: gibberellic acid mediated signaling pathway	4.58E-02
120	GO:0006396: RNA processing	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0050614: delta24-sterol reductase activity	0.00E+00
2	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
3	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
4	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
5	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
6	GO:0019843: rRNA binding	1.49E-16
7	GO:0003735: structural constituent of ribosome	2.82E-11
8	GO:0051920: peroxiredoxin activity	1.84E-09
9	GO:0016209: antioxidant activity	6.60E-09
10	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.53E-06
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.05E-05
12	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.37E-04
13	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	1.37E-04
14	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	1.37E-04
15	GO:0004828: serine-tRNA ligase activity	1.37E-04
16	GO:0004089: carbonate dehydratase activity	3.14E-04
17	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.16E-04
18	GO:0008266: poly(U) RNA binding	3.55E-04
19	GO:0050734: hydroxycinnamoyltransferase activity	5.20E-04
20	GO:0004601: peroxidase activity	5.26E-04
21	GO:0030570: pectate lyase activity	7.07E-04
22	GO:0043023: ribosomal large subunit binding	7.44E-04
23	GO:0008381: mechanically-gated ion channel activity	1.25E-03
24	GO:0004040: amidase activity	1.25E-03
25	GO:0016759: cellulose synthase activity	1.41E-03
26	GO:0008200: ion channel inhibitor activity	1.53E-03
27	GO:0004130: cytochrome-c peroxidase activity	1.53E-03
28	GO:0016688: L-ascorbate peroxidase activity	1.53E-03
29	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	1.83E-03
30	GO:0008289: lipid binding	2.15E-03
31	GO:0052747: sinapyl alcohol dehydrogenase activity	2.49E-03
32	GO:0016788: hydrolase activity, acting on ester bonds	3.21E-03
33	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.22E-03
34	GO:0008047: enzyme activator activity	4.00E-03
35	GO:0051287: NAD binding	4.27E-03
36	GO:0045551: cinnamyl-alcohol dehydrogenase activity	4.85E-03
37	GO:0031072: heat shock protein binding	5.30E-03
38	GO:0031409: pigment binding	6.71E-03
39	GO:0005528: FK506 binding	7.22E-03
40	GO:0008324: cation transmembrane transporter activity	7.73E-03
41	GO:0008514: organic anion transmembrane transporter activity	9.92E-03
42	GO:0047134: protein-disulfide reductase activity	1.05E-02
43	GO:0005199: structural constituent of cell wall	1.17E-02
44	GO:0004791: thioredoxin-disulfide reductase activity	1.23E-02
45	GO:0004872: receptor activity	1.29E-02
46	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.36E-02
47	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.49E-02
48	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.62E-02
49	GO:0016168: chlorophyll binding	1.83E-02
50	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.98E-02
51	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.99E-02
52	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.05E-02
53	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.12E-02
54	GO:0004222: metalloendopeptidase activity	2.28E-02
55	GO:0005516: calmodulin binding	2.35E-02
56	GO:0030145: manganese ion binding	2.36E-02
57	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	2.36E-02
58	GO:0052689: carboxylic ester hydrolase activity	2.49E-02
59	GO:0003993: acid phosphatase activity	2.60E-02
60	GO:0050661: NADP binding	2.76E-02
61	GO:0004364: glutathione transferase activity	2.93E-02
62	GO:0003690: double-stranded DNA binding	3.82E-02
63	GO:0003777: microtubule motor activity	4.00E-02
64	GO:0045735: nutrient reservoir activity	4.19E-02
65	GO:0030599: pectinesterase activity	4.58E-02
66	GO:0051082: unfolded protein binding	4.78E-02
67	GO:0015035: protein disulfide oxidoreductase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009547: plastid ribosome	0.00E+00
2	GO:0009570: chloroplast stroma	1.49E-21
3	GO:0009507: chloroplast	3.12E-21
4	GO:0009941: chloroplast envelope	1.17E-19
5	GO:0009579: thylakoid	1.20E-13
6	GO:0009535: chloroplast thylakoid membrane	3.42E-13
7	GO:0048046: apoplast	1.46E-11
8	GO:0005840: ribosome	9.08E-11
9	GO:0009534: chloroplast thylakoid	9.74E-10
10	GO:0000311: plastid large ribosomal subunit	7.25E-06
11	GO:0009543: chloroplast thylakoid lumen	1.15E-05
12	GO:0031977: thylakoid lumen	2.55E-05
13	GO:0009505: plant-type cell wall	3.68E-05
14	GO:0031225: anchored component of membrane	5.72E-05
15	GO:0010319: stromule	1.22E-04
16	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	1.37E-04
17	GO:0000312: plastid small ribosomal subunit	3.55E-04
18	GO:0046658: anchored component of plasma membrane	4.13E-04
19	GO:0009536: plastid	8.48E-04
20	GO:0005618: cell wall	8.71E-04
21	GO:0016020: membrane	1.10E-03
22	GO:0009533: chloroplast stromal thylakoid	2.15E-03
23	GO:0022626: cytosolic ribosome	2.91E-03
24	GO:0005763: mitochondrial small ribosomal subunit	3.22E-03
25	GO:0031012: extracellular matrix	5.30E-03
26	GO:0030095: chloroplast photosystem II	5.76E-03
27	GO:0030076: light-harvesting complex	6.23E-03
28	GO:0005875: microtubule associated complex	6.71E-03
29	GO:0005576: extracellular region	6.74E-03
30	GO:0009654: photosystem II oxygen evolving complex	7.73E-03
31	GO:0010287: plastoglobule	8.02E-03
32	GO:0009522: photosystem I	1.23E-02
33	GO:0019898: extrinsic component of membrane	1.29E-02
34	GO:0009506: plasmodesma	1.48E-02
35	GO:0005886: plasma membrane	1.54E-02
36	GO:0022627: cytosolic small ribosomal subunit	1.55E-02
37	GO:0030529: intracellular ribonucleoprotein complex	1.76E-02
38	GO:0015934: large ribosomal subunit	2.36E-02
39	GO:0005819: spindle	2.68E-02
40	GO:0009706: chloroplast inner membrane	4.78E-02