co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
5	GO:0006065: UDP-glucuronate biosynthetic process	3.82E-06
6	GO:0006546: glycine catabolic process	1.67E-05
7	GO:0016117: carotenoid biosynthetic process	5.21E-05
8	GO:0032544: plastid translation	1.25E-04
9	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.30E-04
10	GO:0010442: guard cell morphogenesis	1.44E-04
11	GO:0045490: pectin catabolic process	2.91E-04
12	GO:2000123: positive regulation of stomatal complex development	3.29E-04
13	GO:0010424: DNA methylation on cytosine within a CG sequence	3.29E-04
14	GO:0043039: tRNA aminoacylation	3.29E-04
15	GO:0052541: plant-type cell wall cellulose metabolic process	3.29E-04
16	GO:0006695: cholesterol biosynthetic process	3.29E-04
17	GO:0010086: embryonic root morphogenesis	3.29E-04
18	GO:0010069: zygote asymmetric cytokinesis in embryo sac	3.29E-04
19	GO:0006423: cysteinyl-tRNA aminoacylation	3.29E-04
20	GO:0010020: chloroplast fission	3.77E-04
21	GO:0090506: axillary shoot meristem initiation	5.40E-04
22	GO:0006696: ergosterol biosynthetic process	5.40E-04
23	GO:0006418: tRNA aminoacylation for protein translation	5.75E-04
24	GO:0009294: DNA mediated transformation	7.50E-04
25	GO:0007231: osmosensory signaling pathway	7.73E-04
26	GO:0071329: cellular response to sucrose stimulus	7.73E-04
27	GO:0043572: plastid fission	7.73E-04
28	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	7.73E-04
29	GO:0019464: glycine decarboxylation via glycine cleavage system	1.02E-03
30	GO:0009765: photosynthesis, light harvesting	1.02E-03
31	GO:0033500: carbohydrate homeostasis	1.02E-03
32	GO:2000038: regulation of stomatal complex development	1.02E-03
33	GO:0045454: cell redox homeostasis	1.04E-03
34	GO:0016123: xanthophyll biosynthetic process	1.29E-03
35	GO:0010375: stomatal complex patterning	1.29E-03
36	GO:0016120: carotene biosynthetic process	1.29E-03
37	GO:0046686: response to cadmium ion	1.53E-03
38	GO:0006796: phosphate-containing compound metabolic process	1.59E-03
39	GO:0048831: regulation of shoot system development	1.59E-03
40	GO:0007267: cell-cell signaling	1.59E-03
41	GO:0009955: adaxial/abaxial pattern specification	1.91E-03
42	GO:0010067: procambium histogenesis	1.91E-03
43	GO:1901259: chloroplast rRNA processing	1.91E-03
44	GO:0048509: regulation of meristem development	1.91E-03
45	GO:0048444: floral organ morphogenesis	1.91E-03
46	GO:0008272: sulfate transport	2.24E-03
47	GO:0042742: defense response to bacterium	2.56E-03
48	GO:0045337: farnesyl diphosphate biosynthetic process	3.35E-03
49	GO:0033384: geranyl diphosphate biosynthetic process	3.35E-03
50	GO:0006754: ATP biosynthetic process	3.35E-03
51	GO:0048589: developmental growth	3.35E-03
52	GO:0009658: chloroplast organization	3.39E-03
53	GO:0006631: fatty acid metabolic process	3.46E-03
54	GO:0043067: regulation of programmed cell death	3.76E-03
55	GO:0006349: regulation of gene expression by genetic imprinting	3.76E-03
56	GO:0006949: syncytium formation	4.18E-03
57	GO:0010216: maintenance of DNA methylation	4.61E-03
58	GO:0018119: peptidyl-cysteine S-nitrosylation	4.61E-03
59	GO:0050826: response to freezing	5.52E-03
60	GO:0009934: regulation of meristem structural organization	6.00E-03
61	GO:0019253: reductive pentose-phosphate cycle	6.00E-03
62	GO:0010223: secondary shoot formation	6.00E-03
63	GO:0009969: xyloglucan biosynthetic process	6.50E-03
64	GO:0006071: glycerol metabolic process	7.00E-03
65	GO:0009116: nucleoside metabolic process	7.52E-03
66	GO:0007010: cytoskeleton organization	7.52E-03
67	GO:0051302: regulation of cell division	8.06E-03
68	GO:0010026: trichome differentiation	8.06E-03
69	GO:0007017: microtubule-based process	8.06E-03
70	GO:0030245: cellulose catabolic process	9.17E-03
71	GO:0080092: regulation of pollen tube growth	9.17E-03
72	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.75E-03
73	GO:0001944: vasculature development	9.75E-03
74	GO:0071555: cell wall organization	9.96E-03
75	GO:0010089: xylem development	1.03E-02
76	GO:0045492: xylan biosynthetic process	1.03E-02
77	GO:0019722: calcium-mediated signaling	1.03E-02
78	GO:0000271: polysaccharide biosynthetic process	1.16E-02
79	GO:0010087: phloem or xylem histogenesis	1.16E-02
80	GO:0045489: pectin biosynthetic process	1.22E-02
81	GO:0010197: polar nucleus fusion	1.22E-02
82	GO:0071554: cell wall organization or biogenesis	1.41E-02
83	GO:0007264: small GTPase mediated signal transduction	1.48E-02
84	GO:1901657: glycosyl compound metabolic process	1.55E-02
85	GO:0009828: plant-type cell wall loosening	1.62E-02
86	GO:0010027: thylakoid membrane organization	1.84E-02
87	GO:0010029: regulation of seed germination	1.91E-02
88	GO:0009817: defense response to fungus, incompatible interaction	2.22E-02
89	GO:0048481: plant ovule development	2.22E-02
90	GO:0018298: protein-chromophore linkage	2.22E-02
91	GO:0048767: root hair elongation	2.30E-02
92	GO:0000160: phosphorelay signal transduction system	2.30E-02
93	GO:0009813: flavonoid biosynthetic process	2.30E-02
94	GO:0009834: plant-type secondary cell wall biogenesis	2.38E-02
95	GO:0009910: negative regulation of flower development	2.46E-02
96	GO:0016051: carbohydrate biosynthetic process	2.63E-02
97	GO:0006839: mitochondrial transport	2.88E-02
98	GO:0006468: protein phosphorylation	3.39E-02
99	GO:0009793: embryo development ending in seed dormancy	3.47E-02
100	GO:0009664: plant-type cell wall organization	3.70E-02
101	GO:0006364: rRNA processing	3.89E-02
102	GO:0009736: cytokinin-activated signaling pathway	3.89E-02
103	GO:0008152: metabolic process	3.89E-02
104	GO:0006096: glycolytic process	4.38E-02
105	GO:0048367: shoot system development	4.48E-02
106	GO:0016569: covalent chromatin modification	4.78E-02
107	GO:0042545: cell wall modification	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
2	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
3	GO:0019955: cytokine binding	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
6	GO:0046905: phytoene synthase activity	0.00E+00
7	GO:0009885: transmembrane histidine kinase cytokinin receptor activity	0.00E+00
8	GO:0051920: peroxiredoxin activity	2.11E-09
9	GO:0016209: antioxidant activity	7.58E-09
10	GO:0003979: UDP-glucose 6-dehydrogenase activity	3.82E-06
11	GO:0030570: pectate lyase activity	4.01E-05
12	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	1.44E-04
13	GO:0004560: alpha-L-fucosidase activity	1.44E-04
14	GO:0004831: tyrosine-tRNA ligase activity	1.44E-04
15	GO:0051996: squalene synthase activity	1.44E-04
16	GO:0004618: phosphoglycerate kinase activity	3.29E-04
17	GO:0004047: aminomethyltransferase activity	3.29E-04
18	GO:0004817: cysteine-tRNA ligase activity	3.29E-04
19	GO:0009884: cytokinin receptor activity	3.29E-04
20	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	3.29E-04
21	GO:0070330: aromatase activity	5.40E-04
22	GO:0003913: DNA photolyase activity	5.40E-04
23	GO:0002161: aminoacyl-tRNA editing activity	5.40E-04
24	GO:0005504: fatty acid binding	5.40E-04
25	GO:0030267: glyoxylate reductase (NADP) activity	5.40E-04
26	GO:0005034: osmosensor activity	5.40E-04
27	GO:0004601: peroxidase activity	5.76E-04
28	GO:0004375: glycine dehydrogenase (decarboxylating) activity	7.73E-04
29	GO:0004812: aminoacyl-tRNA ligase activity	8.77E-04
30	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.02E-03
31	GO:0045430: chalcone isomerase activity	1.02E-03
32	GO:0019901: protein kinase binding	1.16E-03
33	GO:0018685: alkane 1-monooxygenase activity	1.29E-03
34	GO:0019843: rRNA binding	1.30E-03
35	GO:0003924: GTPase activity	1.43E-03
36	GO:1990538: xylan O-acetyltransferase activity	1.59E-03
37	GO:0016462: pyrophosphatase activity	1.59E-03
38	GO:0005200: structural constituent of cytoskeleton	1.59E-03
39	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.91E-03
40	GO:0051753: mannan synthase activity	1.91E-03
41	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.91E-03
42	GO:0004427: inorganic diphosphatase activity	2.24E-03
43	GO:0009881: photoreceptor activity	2.24E-03
44	GO:0019899: enzyme binding	2.24E-03
45	GO:0003746: translation elongation factor activity	2.92E-03
46	GO:0004337: geranyltranstransferase activity	3.35E-03
47	GO:0008889: glycerophosphodiester phosphodiesterase activity	3.35E-03
48	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.35E-03
49	GO:0004673: protein histidine kinase activity	4.18E-03
50	GO:0051287: NAD binding	4.54E-03
51	GO:0004161: dimethylallyltranstransferase activity	4.61E-03
52	GO:0005089: Rho guanyl-nucleotide exchange factor activity	4.61E-03
53	GO:0004672: protein kinase activity	5.02E-03
54	GO:0008378: galactosyltransferase activity	5.06E-03
55	GO:0000049: tRNA binding	5.06E-03
56	GO:0000155: phosphorelay sensor kinase activity	5.52E-03
57	GO:0004565: beta-galactosidase activity	5.52E-03
58	GO:0030599: pectinesterase activity	6.76E-03
59	GO:0005525: GTP binding	7.27E-03
60	GO:0043424: protein histidine kinase binding	8.06E-03
61	GO:0004176: ATP-dependent peptidase activity	8.61E-03
62	GO:0033612: receptor serine/threonine kinase binding	8.61E-03
63	GO:0016758: transferase activity, transferring hexosyl groups	8.75E-03
64	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	9.17E-03
65	GO:0016829: lyase activity	9.73E-03
66	GO:0008810: cellulase activity	9.75E-03
67	GO:0005102: receptor binding	1.09E-02
68	GO:0005199: structural constituent of cell wall	1.22E-02
69	GO:0048038: quinone binding	1.41E-02
70	GO:0016759: cellulose synthase activity	1.62E-02
71	GO:0008483: transaminase activity	1.69E-02
72	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.69E-02
73	GO:0008237: metallopeptidase activity	1.69E-02
74	GO:0016413: O-acetyltransferase activity	1.76E-02
75	GO:0000287: magnesium ion binding	1.89E-02
76	GO:0102483: scopolin beta-glucosidase activity	2.06E-02
77	GO:0004721: phosphoprotein phosphatase activity	2.06E-02
78	GO:0016757: transferase activity, transferring glycosyl groups	2.14E-02
79	GO:0004222: metalloendopeptidase activity	2.38E-02
80	GO:0052689: carboxylic ester hydrolase activity	2.65E-02
81	GO:0003735: structural constituent of ribosome	2.78E-02
82	GO:0008422: beta-glucosidase activity	2.80E-02
83	GO:0005198: structural molecule activity	3.42E-02
84	GO:0004674: protein serine/threonine kinase activity	3.96E-02
85	GO:0045330: aspartyl esterase activity	4.18E-02
86	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.48E-02
87	GO:0004650: polygalacturonase activity	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	2.41E-11
2	GO:0048046: apoplast	2.03E-07
3	GO:0009507: chloroplast	7.90E-07
4	GO:0009579: thylakoid	3.39E-06
5	GO:0046658: anchored component of plasma membrane	4.06E-06
6	GO:0009941: chloroplast envelope	5.54E-06
7	GO:0009505: plant-type cell wall	6.16E-06
8	GO:0031225: anchored component of membrane	8.80E-06
9	GO:0009534: chloroplast thylakoid	2.17E-04
10	GO:0005853: eukaryotic translation elongation factor 1 complex	5.40E-04
11	GO:0005960: glycine cleavage complex	7.73E-04
12	GO:0005618: cell wall	1.01E-03
13	GO:0005576: extracellular region	1.22E-03
14	GO:0009543: chloroplast thylakoid lumen	1.30E-03
15	GO:0010319: stromule	1.59E-03
16	GO:0010168: ER body	1.59E-03
17	GO:0009533: chloroplast stromal thylakoid	2.24E-03
18	GO:0009539: photosystem II reaction center	2.96E-03
19	GO:0005763: mitochondrial small ribosomal subunit	3.35E-03
20	GO:0045298: tubulin complex	3.35E-03
21	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.35E-03
22	GO:0031977: thylakoid lumen	3.46E-03
23	GO:0016324: apical plasma membrane	4.18E-03
24	GO:0000311: plastid large ribosomal subunit	5.06E-03
25	GO:0000312: plastid small ribosomal subunit	6.00E-03
26	GO:0005875: microtubule associated complex	7.00E-03
27	GO:0009706: chloroplast inner membrane	7.18E-03
28	GO:0009654: photosystem II oxygen evolving complex	8.06E-03
29	GO:0042651: thylakoid membrane	8.06E-03
30	GO:0010287: plastoglobule	8.51E-03
31	GO:0009532: plastid stroma	8.61E-03
32	GO:0009535: chloroplast thylakoid membrane	1.05E-02
33	GO:0005886: plasma membrane	1.17E-02
34	GO:0005794: Golgi apparatus	1.47E-02
35	GO:0000139: Golgi membrane	1.57E-02
36	GO:0009506: plasmodesma	1.70E-02
37	GO:0005874: microtubule	2.31E-02
38	GO:0031969: chloroplast membrane	2.39E-02
39	GO:0000325: plant-type vacuole	2.46E-02
40	GO:0016020: membrane	2.68E-02
41	GO:0005802: trans-Golgi network	2.74E-02
42	GO:0005856: cytoskeleton	3.42E-02
43	GO:0005840: ribosome	3.88E-02
44	GO:0009536: plastid	4.69E-02