Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G38600

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0043487: regulation of RNA stability0.00E+00
2GO:0035278: miRNA mediated inhibition of translation0.00E+00
3GO:0090306: spindle assembly involved in meiosis0.00E+00
4GO:1903288: positive regulation of potassium ion import0.00E+00
5GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay1.48E-05
6GO:0071902: positive regulation of protein serine/threonine kinase activity3.12E-05
7GO:0008361: regulation of cell size3.17E-05
8GO:0016197: endosomal transport7.88E-05
9GO:0048571: long-day photoperiodism7.88E-05
10GO:0006610: ribosomal protein import into nucleus7.88E-05
11GO:0048511: rhythmic process7.90E-05
12GO:0010506: regulation of autophagy1.37E-04
13GO:0032012: regulation of ARF protein signal transduction1.37E-04
14GO:0071230: cellular response to amino acid stimulus1.37E-04
15GO:0031929: TOR signaling1.37E-04
16GO:0006517: protein deglycosylation1.37E-04
17GO:0032940: secretion by cell1.37E-04
18GO:0006473: protein acetylation1.37E-04
19GO:0006013: mannose metabolic process1.37E-04
20GO:0010587: miRNA catabolic process2.04E-04
21GO:0080119: ER body organization2.04E-04
22GO:0007004: telomere maintenance via telomerase2.04E-04
23GO:1901000: regulation of response to salt stress2.04E-04
24GO:0045324: late endosome to vacuole transport2.76E-04
25GO:0045723: positive regulation of fatty acid biosynthetic process2.76E-04
26GO:1990937: xylan acetylation2.76E-04
27GO:0016049: cell growth3.16E-04
28GO:0007029: endoplasmic reticulum organization3.53E-04
29GO:0032876: negative regulation of DNA endoreduplication3.53E-04
30GO:0045491: xylan metabolic process4.34E-04
31GO:0048232: male gamete generation4.34E-04
32GO:0009267: cellular response to starvation4.34E-04
33GO:0000060: protein import into nucleus, translocation4.34E-04
34GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.07E-04
35GO:0030307: positive regulation of cell growth6.07E-04
36GO:0006368: transcription elongation from RNA polymerase II promoter6.07E-04
37GO:0010047: fruit dehiscence6.07E-04
38GO:0009938: negative regulation of gibberellic acid mediated signaling pathway6.99E-04
39GO:0006491: N-glycan processing6.99E-04
40GO:0048589: developmental growth8.92E-04
41GO:0006607: NLS-bearing protein import into nucleus8.92E-04
42GO:0016573: histone acetylation9.92E-04
43GO:0005982: starch metabolic process9.92E-04
44GO:0009908: flower development1.04E-03
45GO:0000398: mRNA splicing, via spliceosome1.15E-03
46GO:0008285: negative regulation of cell proliferation1.20E-03
47GO:0010105: negative regulation of ethylene-activated signaling pathway1.31E-03
48GO:0009737: response to abscisic acid1.43E-03
49GO:0007030: Golgi organization1.67E-03
50GO:0006406: mRNA export from nucleus1.92E-03
51GO:2000377: regulation of reactive oxygen species metabolic process1.92E-03
52GO:0006487: protein N-linked glycosylation1.92E-03
53GO:0009863: salicylic acid mediated signaling pathway1.92E-03
54GO:0016575: histone deacetylation2.05E-03
55GO:0006366: transcription from RNA polymerase II promoter2.19E-03
56GO:0010227: floral organ abscission2.46E-03
57GO:0045492: xylan biosynthetic process2.61E-03
58GO:0009561: megagametogenesis2.61E-03
59GO:0051028: mRNA transport2.75E-03
60GO:0006606: protein import into nucleus2.90E-03
61GO:0042752: regulation of circadian rhythm3.20E-03
62GO:0046777: protein autophosphorylation3.42E-03
63GO:0032502: developmental process3.68E-03
64GO:0045892: negative regulation of transcription, DNA-templated3.88E-03
65GO:0016579: protein deubiquitination4.34E-03
66GO:0009911: positive regulation of flower development4.52E-03
67GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.69E-03
68GO:0006397: mRNA processing4.90E-03
69GO:0006888: ER to Golgi vesicle-mediated transport5.05E-03
70GO:0048481: plant ovule development5.42E-03
71GO:0009834: plant-type secondary cell wall biogenesis5.79E-03
72GO:0009867: jasmonic acid mediated signaling pathway6.38E-03
73GO:0008283: cell proliferation7.60E-03
74GO:0042538: hyperosmotic salinity response8.91E-03
75GO:0009736: cytokinin-activated signaling pathway9.36E-03
76GO:0006364: rRNA processing9.36E-03
77GO:0006486: protein glycosylation9.36E-03
78GO:0006468: protein phosphorylation1.01E-02
79GO:0048367: shoot system development1.08E-02
80GO:0006511: ubiquitin-dependent protein catabolic process1.13E-02
81GO:0009740: gibberellic acid mediated signaling pathway1.15E-02
82GO:0042742: defense response to bacterium1.69E-02
83GO:0010150: leaf senescence1.77E-02
84GO:0008380: RNA splicing2.00E-02
85GO:0015031: protein transport2.15E-02
86GO:0006810: transport2.49E-02
87GO:0009723: response to ethylene2.67E-02
88GO:0048366: leaf development2.71E-02
89GO:0016192: vesicle-mediated transport2.91E-02
90GO:0006886: intracellular protein transport3.27E-02
91GO:0009751: response to salicylic acid3.67E-02
92GO:0048364: root development3.82E-02
93GO:0009873: ethylene-activated signaling pathway4.45E-02
94GO:0009734: auxin-activated signaling pathway4.73E-02
RankGO TermAdjusted P value
1GO:0004572: mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity0.00E+00
2GO:0045131: pre-mRNA branch point binding0.00E+00
3GO:0005515: protein binding2.40E-05
4GO:0016262: protein N-acetylglucosaminyltransferase activity3.12E-05
5GO:0004534: 5'-3' exoribonuclease activity7.88E-05
6GO:0043021: ribonucleoprotein complex binding7.88E-05
7GO:0070034: telomerase RNA binding7.88E-05
8GO:0005086: ARF guanyl-nucleotide exchange factor activity2.76E-04
9GO:0001106: RNA polymerase II transcription corepressor activity2.76E-04
10GO:0004559: alpha-mannosidase activity5.20E-04
11GO:0005085: guanyl-nucleotide exchange factor activity6.07E-04
12GO:0042162: telomeric DNA binding6.07E-04
13GO:0030674: protein binding, bridging6.99E-04
14GO:0031490: chromatin DNA binding9.92E-04
15GO:0001055: RNA polymerase II activity9.92E-04
16GO:0004713: protein tyrosine kinase activity1.10E-03
17GO:0008139: nuclear localization sequence binding1.43E-03
18GO:0003712: transcription cofactor activity1.67E-03
19GO:0008270: zinc ion binding1.91E-03
20GO:0004407: histone deacetylase activity1.92E-03
21GO:0036459: thiol-dependent ubiquitinyl hydrolase activity2.19E-03
22GO:0004540: ribonuclease activity2.19E-03
23GO:0004402: histone acetyltransferase activity2.90E-03
24GO:0003713: transcription coactivator activity3.05E-03
25GO:0008536: Ran GTPase binding3.05E-03
26GO:0004843: thiol-dependent ubiquitin-specific protease activity3.51E-03
27GO:0004672: protein kinase activity4.61E-03
28GO:0003729: mRNA binding4.69E-03
29GO:0004712: protein serine/threonine/tyrosine kinase activity6.77E-03
30GO:0043621: protein self-association8.03E-03
31GO:0003899: DNA-directed 5'-3' RNA polymerase activity9.36E-03
32GO:0016874: ligase activity1.15E-02
33GO:0008565: protein transporter activity1.60E-02
34GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.09E-02
35GO:0004674: protein serine/threonine kinase activity2.14E-02
36GO:0004842: ubiquitin-protein transferase activity2.34E-02
RankGO TermAdjusted P value
1GO:0070449: elongin complex0.00E+00
2GO:0005697: telomerase holoenzyme complex7.88E-05
3GO:0031931: TORC1 complex1.37E-04
4GO:0000932: P-body2.54E-04
5GO:0030127: COPII vesicle coat4.34E-04
6GO:0032588: trans-Golgi network membrane4.34E-04
7GO:0000118: histone deacetylase complex5.20E-04
8GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane6.07E-04
9GO:0034399: nuclear periphery6.99E-04
10GO:0000139: Golgi membrane7.26E-04
11GO:0005634: nucleus1.28E-03
12GO:0005665: DNA-directed RNA polymerase II, core complex1.31E-03
13GO:0005769: early endosome1.79E-03
14GO:0005802: trans-Golgi network2.11E-03
15GO:0031965: nuclear membrane3.36E-03
16GO:0000785: chromatin3.68E-03
17GO:0005643: nuclear pore5.42E-03
18GO:0005681: spliceosomal complex1.05E-02
19GO:0010008: endosome membrane1.08E-02
20GO:0005768: endosome1.52E-02
21GO:0009506: plasmodesma2.25E-02
22GO:0080008: Cul4-RING E3 ubiquitin ligase complex2.57E-02
23GO:0005829: cytosol3.17E-02
Gene type



Gene DE type