Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G38580

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
2GO:0051928: positive regulation of calcium ion transport0.00E+00
3GO:0000390: spliceosomal complex disassembly0.00E+00
4GO:0006105: succinate metabolic process0.00E+00
5GO:0019484: beta-alanine catabolic process0.00E+00
6GO:0043171: peptide catabolic process0.00E+00
7GO:0010219: regulation of vernalization response0.00E+00
8GO:0010378: temperature compensation of the circadian clock0.00E+00
9GO:0010730: negative regulation of hydrogen peroxide biosynthetic process0.00E+00
10GO:0005997: xylulose metabolic process0.00E+00
11GO:0019481: L-alanine catabolic process, by transamination0.00E+00
12GO:0009415: response to water1.20E-05
13GO:0042344: indole glucosinolate catabolic process1.99E-05
14GO:0006020: inositol metabolic process4.39E-05
15GO:0009409: response to cold1.79E-04
16GO:0009737: response to abscisic acid2.30E-04
17GO:0035266: meristem growth3.55E-04
18GO:0009450: gamma-aminobutyric acid catabolic process3.55E-04
19GO:0007292: female gamete generation3.55E-04
20GO:1900060: negative regulation of ceramide biosynthetic process3.55E-04
21GO:1990641: response to iron ion starvation3.55E-04
22GO:0010184: cytokinin transport3.55E-04
23GO:1902265: abscisic acid homeostasis3.55E-04
24GO:0009865: pollen tube adhesion3.55E-04
25GO:0071366: cellular response to indolebutyric acid stimulus3.55E-04
26GO:0006540: glutamate decarboxylation to succinate3.55E-04
27GO:0035494: SNARE complex disassembly3.55E-04
28GO:0032958: inositol phosphate biosynthetic process3.55E-04
29GO:0046520: sphingoid biosynthetic process3.55E-04
30GO:0006369: termination of RNA polymerase II transcription3.55E-04
31GO:0009819: drought recovery3.89E-04
32GO:0048544: recognition of pollen4.47E-04
33GO:0090156: cellular sphingolipid homeostasis7.72E-04
34GO:0010033: response to organic substance7.72E-04
35GO:0048833: specification of floral organ number7.72E-04
36GO:0006101: citrate metabolic process7.72E-04
37GO:0051788: response to misfolded protein7.72E-04
38GO:1900459: positive regulation of brassinosteroid mediated signaling pathway7.72E-04
39GO:0030003: cellular cation homeostasis7.72E-04
40GO:0009257: 10-formyltetrahydrofolate biosynthetic process7.72E-04
41GO:0006979: response to oxidative stress8.99E-04
42GO:0052544: defense response by callose deposition in cell wall9.04E-04
43GO:0009651: response to salt stress9.42E-04
44GO:0009817: defense response to fungus, incompatible interaction1.19E-03
45GO:0030029: actin filament-based process1.25E-03
46GO:0042256: mature ribosome assembly1.25E-03
47GO:0060968: regulation of gene silencing1.25E-03
48GO:0006954: inflammatory response1.25E-03
49GO:0006278: RNA-dependent DNA biosynthetic process1.25E-03
50GO:0006811: ion transport1.34E-03
51GO:0034976: response to endoplasmic reticulum stress1.64E-03
52GO:0006624: vacuolar protein processing1.80E-03
53GO:0010601: positive regulation of auxin biosynthetic process1.80E-03
54GO:0009113: purine nucleobase biosynthetic process1.80E-03
55GO:0015749: monosaccharide transport1.80E-03
56GO:1901332: negative regulation of lateral root development1.80E-03
57GO:0006882: cellular zinc ion homeostasis1.80E-03
58GO:0019438: aromatic compound biosynthetic process1.80E-03
59GO:0042542: response to hydrogen peroxide2.10E-03
60GO:0007623: circadian rhythm2.13E-03
61GO:0009269: response to desiccation2.20E-03
62GO:0009687: abscisic acid metabolic process2.42E-03
63GO:0015743: malate transport2.42E-03
64GO:0048442: sepal development2.42E-03
65GO:1902584: positive regulation of response to water deprivation2.42E-03
66GO:0006536: glutamate metabolic process2.42E-03
67GO:0042273: ribosomal large subunit biogenesis2.42E-03
68GO:0010600: regulation of auxin biosynthetic process2.42E-03
69GO:0006878: cellular copper ion homeostasis2.42E-03
70GO:0006646: phosphatidylethanolamine biosynthetic process2.42E-03
71GO:0071215: cellular response to abscisic acid stimulus2.63E-03
72GO:0000380: alternative mRNA splicing, via spliceosome3.09E-03
73GO:0048578: positive regulation of long-day photoperiodism, flowering3.09E-03
74GO:0043097: pyrimidine nucleoside salvage3.09E-03
75GO:0051603: proteolysis involved in cellular protein catabolic process3.38E-03
76GO:0046323: glucose import3.61E-03
77GO:0015691: cadmium ion transport3.82E-03
78GO:0048827: phyllome development3.82E-03
79GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation3.82E-03
80GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.82E-03
81GO:0048232: male gamete generation3.82E-03
82GO:0043248: proteasome assembly3.82E-03
83GO:0042732: D-xylose metabolic process3.82E-03
84GO:0006206: pyrimidine nucleobase metabolic process3.82E-03
85GO:0000741: karyogamy3.82E-03
86GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly3.82E-03
87GO:0055114: oxidation-reduction process3.83E-03
88GO:0042752: regulation of circadian rhythm3.88E-03
89GO:0006635: fatty acid beta-oxidation4.45E-03
90GO:0045926: negative regulation of growth4.60E-03
91GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.60E-03
92GO:0006694: steroid biosynthetic process4.60E-03
93GO:0031930: mitochondria-nucleus signaling pathway4.60E-03
94GO:0009861: jasmonic acid and ethylene-dependent systemic resistance4.60E-03
95GO:0007165: signal transduction5.06E-03
96GO:0098869: cellular oxidant detoxification5.44E-03
97GO:0009395: phospholipid catabolic process5.44E-03
98GO:0048437: floral organ development5.44E-03
99GO:0006333: chromatin assembly or disassembly5.44E-03
100GO:0009396: folic acid-containing compound biosynthetic process5.44E-03
101GO:0010044: response to aluminum ion5.44E-03
102GO:0006102: isocitrate metabolic process6.32E-03
103GO:0016559: peroxisome fission6.32E-03
104GO:0009061: anaerobic respiration6.32E-03
105GO:0010928: regulation of auxin mediated signaling pathway6.32E-03
106GO:0010078: maintenance of root meristem identity6.32E-03
107GO:0006491: N-glycan processing6.32E-03
108GO:0001666: response to hypoxia6.44E-03
109GO:0044550: secondary metabolite biosynthetic process6.54E-03
110GO:0009808: lignin metabolic process7.25E-03
111GO:0006972: hyperosmotic response7.25E-03
112GO:0010262: somatic embryogenesis7.25E-03
113GO:0001510: RNA methylation7.25E-03
114GO:0046686: response to cadmium ion7.25E-03
115GO:0006950: response to stress7.59E-03
116GO:0009414: response to water deprivation8.10E-03
117GO:0035556: intracellular signal transduction8.11E-03
118GO:0006098: pentose-phosphate shunt8.22E-03
119GO:0034765: regulation of ion transmembrane transport8.22E-03
120GO:0042742: defense response to bacterium8.48E-03
121GO:0035999: tetrahydrofolate interconversion9.24E-03
122GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway9.24E-03
123GO:0008202: steroid metabolic process9.24E-03
124GO:0009631: cold acclimation9.74E-03
125GO:0010043: response to zinc ion9.74E-03
126GO:0055062: phosphate ion homeostasis1.03E-02
127GO:0009970: cellular response to sulfate starvation1.03E-02
128GO:0006995: cellular response to nitrogen starvation1.03E-02
129GO:0048441: petal development1.03E-02
130GO:0048829: root cap development1.03E-02
131GO:0045087: innate immune response1.07E-02
132GO:0009637: response to blue light1.07E-02
133GO:0006099: tricarboxylic acid cycle1.12E-02
134GO:0010015: root morphogenesis1.14E-02
135GO:0006816: calcium ion transport1.14E-02
136GO:0009682: induced systemic resistance1.14E-02
137GO:0030148: sphingolipid biosynthetic process1.14E-02
138GO:0006378: mRNA polyadenylation1.14E-02
139GO:0016925: protein sumoylation1.26E-02
140GO:0010468: regulation of gene expression1.28E-02
141GO:2000012: regulation of auxin polar transport1.38E-02
142GO:0006807: nitrogen compound metabolic process1.38E-02
143GO:0048440: carpel development1.50E-02
144GO:0006541: glutamine metabolic process1.50E-02
145GO:0007034: vacuolar transport1.50E-02
146GO:0009933: meristem structural organization1.50E-02
147GO:0006855: drug transmembrane transport1.61E-02
148GO:0007031: peroxisome organization1.62E-02
149GO:0019853: L-ascorbic acid biosynthetic process1.62E-02
150GO:0005985: sucrose metabolic process1.62E-02
151GO:0090351: seedling development1.62E-02
152GO:0010030: positive regulation of seed germination1.62E-02
153GO:0000165: MAPK cascade1.68E-02
154GO:0006863: purine nucleobase transport1.76E-02
155GO:0009585: red, far-red light phototransduction1.87E-02
156GO:0006813: potassium ion transport1.87E-02
157GO:0045333: cellular respiration1.89E-02
158GO:0016310: phosphorylation1.90E-02
159GO:0006970: response to osmotic stress1.95E-02
160GO:0016575: histone deacetylation2.03E-02
161GO:0006874: cellular calcium ion homeostasis2.03E-02
162GO:0009695: jasmonic acid biosynthetic process2.03E-02
163GO:0006468: protein phosphorylation2.26E-02
164GO:0048367: shoot system development2.28E-02
165GO:0030433: ubiquitin-dependent ERAD pathway2.31E-02
166GO:0035428: hexose transmembrane transport2.31E-02
167GO:0031348: negative regulation of defense response2.31E-02
168GO:0080167: response to karrikin2.33E-02
169GO:0006012: galactose metabolic process2.46E-02
170GO:0009693: ethylene biosynthetic process2.46E-02
171GO:0048443: stamen development2.61E-02
172GO:0006396: RNA processing2.74E-02
173GO:0009789: positive regulation of abscisic acid-activated signaling pathway2.77E-02
174GO:0015991: ATP hydrolysis coupled proton transport2.92E-02
175GO:0045454: cell redox homeostasis2.92E-02
176GO:0042631: cellular response to water deprivation2.92E-02
177GO:0000226: microtubule cytoskeleton organization2.92E-02
178GO:0080022: primary root development2.92E-02
179GO:0042391: regulation of membrane potential2.92E-02
180GO:0010051: xylem and phloem pattern formation2.92E-02
181GO:0006520: cellular amino acid metabolic process3.08E-02
182GO:0010154: fruit development3.08E-02
183GO:0010197: polar nucleus fusion3.08E-02
184GO:0009646: response to absence of light3.25E-02
185GO:0061025: membrane fusion3.25E-02
186GO:0006814: sodium ion transport3.25E-02
187GO:0010183: pollen tube guidance3.41E-02
188GO:0008654: phospholipid biosynthetic process3.41E-02
189GO:0009556: microsporogenesis3.41E-02
190GO:0048510: regulation of timing of transition from vegetative to reproductive phase3.58E-02
191GO:0009408: response to heat3.78E-02
192GO:0006511: ubiquitin-dependent protein catabolic process3.85E-02
193GO:0019760: glucosinolate metabolic process4.11E-02
194GO:0006914: autophagy4.11E-02
195GO:0010286: heat acclimation4.29E-02
196GO:0010150: leaf senescence4.58E-02
197GO:0016126: sterol biosynthetic process4.65E-02
198GO:0009911: positive regulation of flower development4.65E-02
199GO:0010029: regulation of seed germination4.84E-02
RankGO TermAdjusted P value
1GO:1990446: U1 snRNP binding0.00E+00
2GO:0005272: sodium channel activity0.00E+00
3GO:0010349: L-galactose dehydrogenase activity0.00E+00
4GO:0047787: delta4-3-oxosteroid 5beta-reductase activity0.00E+00
5GO:0009045: xylose isomerase activity0.00E+00
6GO:0005358: high-affinity hydrogen:glucose symporter activity0.00E+00
7GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
8GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity0.00E+00
9GO:0015211: purine nucleoside transmembrane transporter activity0.00E+00
10GO:0016428: tRNA (cytosine-5-)-methyltransferase activity0.00E+00
11GO:0050897: cobalt ion binding7.73E-07
12GO:0016301: kinase activity4.55E-05
13GO:0009679: hexose:proton symporter activity3.55E-04
14GO:0035671: enone reductase activity3.55E-04
15GO:0000170: sphingosine hydroxylase activity3.55E-04
16GO:0000829: inositol heptakisphosphate kinase activity3.55E-04
17GO:0010013: N-1-naphthylphthalamic acid binding3.55E-04
18GO:0008692: 3-hydroxybutyryl-CoA epimerase activity3.55E-04
19GO:0004856: xylulokinase activity3.55E-04
20GO:0004112: cyclic-nucleotide phosphodiesterase activity3.55E-04
21GO:0016274: protein-arginine N-methyltransferase activity3.55E-04
22GO:0070006: metalloaminopeptidase activity3.55E-04
23GO:0000828: inositol hexakisphosphate kinase activity3.55E-04
24GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.55E-04
25GO:0003867: 4-aminobutyrate transaminase activity3.55E-04
26GO:0005244: voltage-gated ion channel activity3.55E-04
27GO:0033857: diphosphoinositol-pentakisphosphate kinase activity3.55E-04
28GO:0004525: ribonuclease III activity3.89E-04
29GO:0005267: potassium channel activity4.76E-04
30GO:0004609: phosphatidylserine decarboxylase activity7.72E-04
31GO:0003994: aconitate hydratase activity7.72E-04
32GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity7.72E-04
33GO:0004477: methenyltetrahydrofolate cyclohydrolase activity7.72E-04
34GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity7.72E-04
35GO:0004839: ubiquitin activating enzyme activity7.72E-04
36GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity7.72E-04
37GO:0042284: sphingolipid delta-4 desaturase activity7.72E-04
38GO:0004329: formate-tetrahydrofolate ligase activity7.72E-04
39GO:0047209: coniferyl-alcohol glucosyltransferase activity7.72E-04
40GO:0004352: glutamate dehydrogenase (NAD+) activity7.72E-04
41GO:0001047: core promoter binding7.72E-04
42GO:0004353: glutamate dehydrogenase [NAD(P)+] activity7.72E-04
43GO:0004177: aminopeptidase activity9.04E-04
44GO:0005483: soluble NSF attachment protein activity1.25E-03
45GO:0019948: SUMO activating enzyme activity1.25E-03
46GO:0017150: tRNA dihydrouridine synthase activity1.25E-03
47GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity1.25E-03
48GO:0004096: catalase activity1.25E-03
49GO:0004300: enoyl-CoA hydratase activity1.80E-03
50GO:0048027: mRNA 5'-UTR binding1.80E-03
51GO:0015086: cadmium ion transmembrane transporter activity1.80E-03
52GO:0004108: citrate (Si)-synthase activity1.80E-03
53GO:0030527: structural constituent of chromatin1.80E-03
54GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.80E-03
55GO:0004165: dodecenoyl-CoA delta-isomerase activity1.80E-03
56GO:0005351: sugar:proton symporter activity2.05E-03
57GO:0004707: MAP kinase activity2.20E-03
58GO:0004737: pyruvate decarboxylase activity2.42E-03
59GO:0019905: syntaxin binding2.42E-03
60GO:0005253: anion channel activity2.42E-03
61GO:0042277: peptide binding2.42E-03
62GO:0009916: alternative oxidase activity2.42E-03
63GO:0005524: ATP binding2.93E-03
64GO:0010294: abscisic acid glucosyltransferase activity3.09E-03
65GO:0015145: monosaccharide transmembrane transporter activity3.09E-03
66GO:0008641: small protein activating enzyme activity3.09E-03
67GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.09E-03
68GO:0016773: phosphotransferase activity, alcohol group as acceptor3.09E-03
69GO:0030976: thiamine pyrophosphate binding3.82E-03
70GO:0004629: phospholipase C activity3.82E-03
71GO:0019137: thioglucosidase activity3.82E-03
72GO:0000293: ferric-chelate reductase activity3.82E-03
73GO:0036402: proteasome-activating ATPase activity3.82E-03
74GO:0004849: uridine kinase activity4.60E-03
75GO:0070300: phosphatidic acid binding4.60E-03
76GO:0004602: glutathione peroxidase activity4.60E-03
77GO:0004435: phosphatidylinositol phospholipase C activity4.60E-03
78GO:0005261: cation channel activity4.60E-03
79GO:0004197: cysteine-type endopeptidase activity4.75E-03
80GO:0016831: carboxy-lyase activity5.44E-03
81GO:0009881: photoreceptor activity5.44E-03
82GO:0015140: malate transmembrane transporter activity5.44E-03
83GO:0004033: aldo-keto reductase (NADP) activity6.32E-03
84GO:0004869: cysteine-type endopeptidase inhibitor activity6.32E-03
85GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen6.99E-03
86GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.25E-03
87GO:0001104: RNA polymerase II transcription cofactor activity7.25E-03
88GO:0005506: iron ion binding8.22E-03
89GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity8.22E-03
90GO:0015144: carbohydrate transmembrane transporter activity8.49E-03
91GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen8.51E-03
92GO:0004722: protein serine/threonine phosphatase activity8.71E-03
93GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity9.24E-03
94GO:0008171: O-methyltransferase activity1.03E-02
95GO:0015020: glucuronosyltransferase activity1.03E-02
96GO:0005262: calcium channel activity1.38E-02
97GO:0008081: phosphoric diester hydrolase activity1.38E-02
98GO:0004175: endopeptidase activity1.50E-02
99GO:0030552: cAMP binding1.62E-02
100GO:0030553: cGMP binding1.62E-02
101GO:0017025: TBP-class protein binding1.62E-02
102GO:0004970: ionotropic glutamate receptor activity1.62E-02
103GO:0005217: intracellular ligand-gated ion channel activity1.62E-02
104GO:0004672: protein kinase activity1.78E-02
105GO:0004407: histone deacetylase activity1.89E-02
106GO:0043424: protein histidine kinase binding2.03E-02
107GO:0005216: ion channel activity2.03E-02
108GO:0005345: purine nucleobase transmembrane transporter activity2.03E-02
109GO:0020037: heme binding2.04E-02
110GO:0003964: RNA-directed DNA polymerase activity2.17E-02
111GO:0004497: monooxygenase activity2.33E-02
112GO:0008270: zinc ion binding2.38E-02
113GO:0080043: quercetin 3-O-glucosyltransferase activity2.43E-02
114GO:0080044: quercetin 7-O-glucosyltransferase activity2.43E-02
115GO:0003756: protein disulfide isomerase activity2.61E-02
116GO:0005249: voltage-gated potassium channel activity2.92E-02
117GO:0030551: cyclic nucleotide binding2.92E-02
118GO:0005355: glucose transmembrane transporter activity3.25E-02
119GO:0030246: carbohydrate binding3.79E-02
120GO:0005507: copper ion binding4.12E-02
121GO:0019825: oxygen binding4.12E-02
122GO:0005200: structural constituent of cytoskeleton4.29E-02
RankGO TermAdjusted P value
1GO:0071008: U2-type post-mRNA release spliceosomal complex0.00E+00
2GO:0031981: nuclear lumen0.00E+00
3GO:0005886: plasma membrane1.94E-08
4GO:0005777: peroxisome4.31E-05
5GO:0000323: lytic vacuole4.39E-05
6GO:0016021: integral component of membrane5.97E-05
7GO:0035339: SPOTS complex3.55E-04
8GO:0005783: endoplasmic reticulum1.50E-03
9GO:0005849: mRNA cleavage factor complex1.80E-03
10GO:0032586: protein storage vacuole membrane2.42E-03
11GO:0005776: autophagosome2.42E-03
12GO:0033179: proton-transporting V-type ATPase, V0 domain2.42E-03
13GO:0005829: cytosol2.98E-03
14GO:0016020: membrane3.42E-03
15GO:0005773: vacuole3.61E-03
16GO:0070847: core mediator complex3.82E-03
17GO:0000815: ESCRT III complex4.60E-03
18GO:0031597: cytosolic proteasome complex4.60E-03
19GO:0031595: nuclear proteasome complex5.44E-03
20GO:0030687: preribosome, large subunit precursor5.44E-03
21GO:0000326: protein storage vacuole7.25E-03
22GO:0005779: integral component of peroxisomal membrane7.25E-03
23GO:0031090: organelle membrane8.22E-03
24GO:0008540: proteasome regulatory particle, base subcomplex9.24E-03
25GO:0000786: nucleosome1.02E-02
26GO:0009506: plasmodesma1.15E-02
27GO:0016602: CCAAT-binding factor complex1.38E-02
28GO:0005764: lysosome1.50E-02
29GO:0070469: respiratory chain2.03E-02
30GO:0010008: endosome membrane2.28E-02
31GO:0031410: cytoplasmic vesicle2.31E-02
32GO:0016592: mediator complex3.75E-02
33GO:0000785: chromatin3.75E-02
34GO:0005774: vacuolar membrane3.82E-02
35GO:0005778: peroxisomal membrane4.29E-02
36GO:0009705: plant-type vacuole membrane4.58E-02
37GO:0005789: endoplasmic reticulum membrane4.98E-02
Gene type



Gene DE type