co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38160

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:0042371: vitamin K biosynthetic process	0.00E+00
5	GO:0006399: tRNA metabolic process	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
8	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
9	GO:0006642: triglyceride mobilization	0.00E+00
10	GO:0006412: translation	1.71E-17
11	GO:0032544: plastid translation	3.63E-10
12	GO:0042254: ribosome biogenesis	1.42E-08
13	GO:0010027: thylakoid membrane organization	2.63E-08
14	GO:0015995: chlorophyll biosynthetic process	4.52E-08
15	GO:0009658: chloroplast organization	2.30E-07
16	GO:0015979: photosynthesis	8.89E-07
17	GO:0009735: response to cytokinin	1.43E-06
18	GO:0090391: granum assembly	8.79E-06
19	GO:0010196: nonphotochemical quenching	1.57E-04
20	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	2.27E-04
21	GO:0043489: RNA stabilization	2.27E-04
22	GO:1904966: positive regulation of vitamin E biosynthetic process	2.27E-04
23	GO:1904964: positive regulation of phytol biosynthetic process	2.27E-04
24	GO:0071588: hydrogen peroxide mediated signaling pathway	2.27E-04
25	GO:0006457: protein folding	2.31E-04
26	GO:0071482: cellular response to light stimulus	2.48E-04
27	GO:0006779: porphyrin-containing compound biosynthetic process	3.56E-04
28	GO:0048829: root cap development	4.18E-04
29	GO:0006782: protoporphyrinogen IX biosynthetic process	4.18E-04
30	GO:0006352: DNA-templated transcription, initiation	4.83E-04
31	GO:0034755: iron ion transmembrane transport	5.05E-04
32	GO:0001736: establishment of planar polarity	5.05E-04
33	GO:0006568: tryptophan metabolic process	5.05E-04
34	GO:0010024: phytochromobilin biosynthetic process	5.05E-04
35	GO:1902326: positive regulation of chlorophyll biosynthetic process	5.05E-04
36	GO:0016024: CDP-diacylglycerol biosynthetic process	5.53E-04
37	GO:0010207: photosystem II assembly	7.06E-04
38	GO:0019253: reductive pentose-phosphate cycle	7.06E-04
39	GO:0006954: inflammatory response	8.21E-04
40	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	8.21E-04
41	GO:0019563: glycerol catabolic process	8.21E-04
42	GO:0032504: multicellular organism reproduction	8.21E-04
43	GO:0015675: nickel cation transport	8.21E-04
44	GO:0006788: heme oxidation	8.21E-04
45	GO:0009451: RNA modification	8.22E-04
46	GO:0046739: transport of virus in multicellular host	1.17E-03
47	GO:0003333: amino acid transmembrane transport	1.17E-03
48	GO:0006986: response to unfolded protein	1.17E-03
49	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.17E-03
50	GO:2001141: regulation of RNA biosynthetic process	1.17E-03
51	GO:0051085: chaperone mediated protein folding requiring cofactor	1.17E-03
52	GO:0010239: chloroplast mRNA processing	1.17E-03
53	GO:0019048: modulation by virus of host morphology or physiology	1.17E-03
54	GO:0031048: chromatin silencing by small RNA	1.17E-03
55	GO:0009650: UV protection	1.17E-03
56	GO:0009793: embryo development ending in seed dormancy	1.34E-03
57	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.38E-03
58	GO:0009306: protein secretion	1.50E-03
59	GO:0071483: cellular response to blue light	1.56E-03
60	GO:0051567: histone H3-K9 methylation	1.56E-03
61	GO:0080022: primary root development	1.76E-03
62	GO:0000413: protein peptidyl-prolyl isomerization	1.76E-03
63	GO:0006564: L-serine biosynthetic process	1.99E-03
64	GO:0010236: plastoquinone biosynthetic process	1.99E-03
65	GO:0045038: protein import into chloroplast thylakoid membrane	1.99E-03
66	GO:0016458: gene silencing	2.45E-03
67	GO:0042549: photosystem II stabilization	2.45E-03
68	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.45E-03
69	GO:0000470: maturation of LSU-rRNA	2.45E-03
70	GO:0006655: phosphatidylglycerol biosynthetic process	2.45E-03
71	GO:0009828: plant-type cell wall loosening	2.82E-03
72	GO:0042372: phylloquinone biosynthetic process	2.94E-03
73	GO:1901259: chloroplast rRNA processing	2.94E-03
74	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.94E-03
75	GO:0017148: negative regulation of translation	2.94E-03
76	GO:0006694: steroid biosynthetic process	2.94E-03
77	GO:0010019: chloroplast-nucleus signaling pathway	2.94E-03
78	GO:0006400: tRNA modification	3.47E-03
79	GO:0009772: photosynthetic electron transport in photosystem II	3.47E-03
80	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.47E-03
81	GO:0009790: embryo development	3.58E-03
82	GO:0030091: protein repair	4.02E-03
83	GO:0006353: DNA-templated transcription, termination	4.02E-03
84	GO:0006605: protein targeting	4.02E-03
85	GO:0000028: ribosomal small subunit assembly	4.02E-03
86	GO:0048564: photosystem I assembly	4.02E-03
87	GO:0045292: mRNA cis splicing, via spliceosome	4.02E-03
88	GO:0018298: protein-chromophore linkage	4.38E-03
89	GO:0009817: defense response to fungus, incompatible interaction	4.38E-03
90	GO:0009808: lignin metabolic process	4.60E-03
91	GO:0010497: plasmodesmata-mediated intercellular transport	4.60E-03
92	GO:0009631: cold acclimation	5.06E-03
93	GO:0010206: photosystem II repair	5.22E-03
94	GO:0006783: heme biosynthetic process	5.22E-03
95	GO:0000373: Group II intron splicing	5.22E-03
96	GO:0006865: amino acid transport	5.30E-03
97	GO:0009637: response to blue light	5.54E-03
98	GO:0034599: cellular response to oxidative stress	5.79E-03
99	GO:0030001: metal ion transport	6.32E-03
100	GO:0030422: production of siRNA involved in RNA interference	6.51E-03
101	GO:0045036: protein targeting to chloroplast	6.51E-03
102	GO:0006949: syncytium formation	6.51E-03
103	GO:0010114: response to red light	7.14E-03
104	GO:0009073: aromatic amino acid family biosynthetic process	7.20E-03
105	GO:0043085: positive regulation of catalytic activity	7.20E-03
106	GO:0006879: cellular iron ion homeostasis	7.20E-03
107	GO:0048765: root hair cell differentiation	7.20E-03
108	GO:0009826: unidimensional cell growth	7.35E-03
109	GO:0006006: glucose metabolic process	8.66E-03
110	GO:0006094: gluconeogenesis	8.66E-03
111	GO:0010588: cotyledon vascular tissue pattern formation	8.66E-03
112	GO:0009664: plant-type cell wall organization	8.97E-03
113	GO:0010143: cutin biosynthetic process	9.42E-03
114	GO:0090351: seedling development	1.02E-02
115	GO:0006096: glycolytic process	1.14E-02
116	GO:0000027: ribosomal large subunit assembly	1.19E-02
117	GO:0009768: photosynthesis, light harvesting in photosystem I	1.27E-02
118	GO:0045454: cell redox homeostasis	1.28E-02
119	GO:0006306: DNA methylation	1.36E-02
120	GO:0009624: response to nematode	1.38E-02
121	GO:0009411: response to UV	1.54E-02
122	GO:0019722: calcium-mediated signaling	1.64E-02
123	GO:0006662: glycerol ether metabolic process	1.93E-02
124	GO:0006342: chromatin silencing	1.93E-02
125	GO:0009958: positive gravitropism	1.93E-02
126	GO:0006633: fatty acid biosynthetic process	2.17E-02
127	GO:0000302: response to reactive oxygen species	2.24E-02
128	GO:0016132: brassinosteroid biosynthetic process	2.24E-02
129	GO:0016032: viral process	2.35E-02
130	GO:0030163: protein catabolic process	2.46E-02
131	GO:0007267: cell-cell signaling	2.68E-02
132	GO:0051607: defense response to virus	2.80E-02
133	GO:0009816: defense response to bacterium, incompatible interaction	3.03E-02
134	GO:0016311: dephosphorylation	3.40E-02
135	GO:0009416: response to light stimulus	3.41E-02
136	GO:0010311: lateral root formation	3.65E-02
137	GO:0010218: response to far red light	3.77E-02
138	GO:0009834: plant-type secondary cell wall biogenesis	3.77E-02
139	GO:0009409: response to cold	4.10E-02
140	GO:0045087: innate immune response	4.17E-02
141	GO:0006839: mitochondrial transport	4.57E-02
142	GO:0009926: auxin polar transport	4.98E-02
143	GO:0051707: response to other organism	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0050614: delta24-sterol reductase activity	0.00E+00
4	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
5	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
6	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
7	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
8	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
9	GO:0019843: rRNA binding	6.49E-25
10	GO:0003735: structural constituent of ribosome	3.89E-20
11	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.03E-07
12	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	2.41E-06
13	GO:0016851: magnesium chelatase activity	2.00E-05
14	GO:0043023: ribosomal large subunit binding	2.00E-05
15	GO:0001053: plastid sigma factor activity	3.66E-05
16	GO:0016987: sigma factor activity	3.66E-05
17	GO:0005528: FK506 binding	6.01E-05
18	GO:0051087: chaperone binding	7.03E-05
19	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.27E-04
20	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	2.27E-04
21	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.27E-04
22	GO:0004807: triose-phosphate isomerase activity	2.27E-04
23	GO:0004655: porphobilinogen synthase activity	2.27E-04
24	GO:0016630: protochlorophyllide reductase activity	5.05E-04
25	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	5.05E-04
26	GO:0015099: nickel cation transmembrane transporter activity	5.05E-04
27	GO:0004617: phosphoglycerate dehydrogenase activity	5.05E-04
28	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.05E-04
29	GO:0000774: adenyl-nucleotide exchange factor activity	5.05E-04
30	GO:0003723: RNA binding	6.15E-04
31	GO:0008266: poly(U) RNA binding	7.06E-04
32	GO:0030267: glyoxylate reductase (NADP) activity	8.21E-04
33	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.21E-04
34	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	8.21E-04
35	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	8.21E-04
36	GO:0004148: dihydrolipoyl dehydrogenase activity	8.21E-04
37	GO:0035197: siRNA binding	1.17E-03
38	GO:0008097: 5S rRNA binding	1.17E-03
39	GO:0043495: protein anchor	1.56E-03
40	GO:0004392: heme oxygenase (decyclizing) activity	1.56E-03
41	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.56E-03
42	GO:0004659: prenyltransferase activity	1.56E-03
43	GO:0010011: auxin binding	1.56E-03
44	GO:0016836: hydro-lyase activity	1.56E-03
45	GO:0010328: auxin influx transmembrane transporter activity	1.56E-03
46	GO:0016788: hydrolase activity, acting on ester bonds	1.57E-03
47	GO:0003959: NADPH dehydrogenase activity	1.99E-03
48	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.99E-03
49	GO:0051082: unfolded protein binding	2.21E-03
50	GO:0016688: L-ascorbate peroxidase activity	2.45E-03
51	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.45E-03
52	GO:0004130: cytochrome-c peroxidase activity	2.45E-03
53	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.45E-03
54	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.94E-03
55	GO:0051920: peroxiredoxin activity	2.94E-03
56	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.94E-03
57	GO:0019899: enzyme binding	3.47E-03
58	GO:0016168: chlorophyll binding	3.55E-03
59	GO:0004033: aldo-keto reductase (NADP) activity	4.02E-03
60	GO:0052747: sinapyl alcohol dehydrogenase activity	4.02E-03
61	GO:0016209: antioxidant activity	4.02E-03
62	GO:0008312: 7S RNA binding	4.02E-03
63	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.38E-03
64	GO:0047617: acyl-CoA hydrolase activity	5.85E-03
65	GO:0005381: iron ion transmembrane transporter activity	5.85E-03
66	GO:0008047: enzyme activator activity	6.51E-03
67	GO:0045551: cinnamyl-alcohol dehydrogenase activity	7.92E-03
68	GO:0004521: endoribonuclease activity	7.92E-03
69	GO:0015293: symporter activity	8.03E-03
70	GO:0008081: phosphoric diester hydrolase activity	8.66E-03
71	GO:0051287: NAD binding	8.66E-03
72	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.42E-03
73	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.64E-03
74	GO:0015171: amino acid transmembrane transporter activity	1.07E-02
75	GO:0031409: pigment binding	1.10E-02
76	GO:0016746: transferase activity, transferring acyl groups	1.42E-02
77	GO:0030570: pectate lyase activity	1.54E-02
78	GO:0022891: substrate-specific transmembrane transporter activity	1.54E-02
79	GO:0003729: mRNA binding	1.59E-02
80	GO:0047134: protein-disulfide reductase activity	1.73E-02
81	GO:0004519: endonuclease activity	1.85E-02
82	GO:0008080: N-acetyltransferase activity	1.93E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	2.03E-02
84	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.46E-02
85	GO:0016791: phosphatase activity	2.57E-02
86	GO:0008483: transaminase activity	2.68E-02
87	GO:0016597: amino acid binding	2.80E-02
88	GO:0008236: serine-type peptidase activity	3.40E-02
89	GO:0000287: magnesium ion binding	3.62E-02
90	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.90E-02
91	GO:0003746: translation elongation factor activity	4.17E-02
92	GO:0003993: acid phosphatase activity	4.30E-02
93	GO:0051539: 4 iron, 4 sulfur cluster binding	4.57E-02
94	GO:0050661: NADP binding	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0009547: plastid ribosome	0.00E+00
3	GO:0009507: chloroplast	1.72E-59
4	GO:0009570: chloroplast stroma	6.54E-54
5	GO:0009941: chloroplast envelope	1.15E-41
6	GO:0009579: thylakoid	2.97E-19
7	GO:0005840: ribosome	3.88E-18
8	GO:0009535: chloroplast thylakoid membrane	9.03E-13
9	GO:0009534: chloroplast thylakoid	1.65E-11
10	GO:0031977: thylakoid lumen	7.41E-09
11	GO:0009543: chloroplast thylakoid lumen	1.09E-08
12	GO:0010007: magnesium chelatase complex	8.79E-06
13	GO:0000311: plastid large ribosomal subunit	2.34E-05
14	GO:0000312: plastid small ribosomal subunit	3.55E-05
15	GO:0009536: plastid	2.83E-04
16	GO:0080085: signal recognition particle, chloroplast targeting	5.05E-04
17	GO:0016020: membrane	5.53E-04
18	GO:0005719: nuclear euchromatin	1.17E-03
19	GO:0015935: small ribosomal subunit	1.17E-03
20	GO:0031969: chloroplast membrane	2.12E-03
21	GO:0022625: cytosolic large ribosomal subunit	2.29E-03
22	GO:0030529: intracellular ribonucleoprotein complex	3.36E-03
23	GO:0009986: cell surface	3.47E-03
24	GO:0009533: chloroplast stromal thylakoid	3.47E-03
25	GO:0005759: mitochondrial matrix	3.93E-03
26	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.60E-03
27	GO:0005618: cell wall	4.83E-03
28	GO:0015934: large ribosomal subunit	5.06E-03
29	GO:0015030: Cajal body	5.85E-03
30	GO:0022627: cytosolic small ribosomal subunit	6.32E-03
31	GO:0030076: light-harvesting complex	1.02E-02
32	GO:0048046: apoplast	1.08E-02
33	GO:0042651: thylakoid membrane	1.27E-02
34	GO:0009654: photosystem II oxygen evolving complex	1.27E-02
35	GO:0009532: plastid stroma	1.36E-02
36	GO:0043231: intracellular membrane-bounded organelle	1.88E-02
37	GO:0009522: photosystem I	2.03E-02
38	GO:0009523: photosystem II	2.14E-02
39	GO:0019898: extrinsic component of membrane	2.14E-02
40	GO:0010319: stromule	2.68E-02
41	GO:0009295: nucleoid	2.68E-02
42	GO:0046658: anchored component of plasma membrane	3.16E-02
43	GO:0022626: cytosolic ribosome	3.23E-02