co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G37910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071731: response to nitric oxide	0.00E+00
2	GO:0071433: cell wall repair	0.00E+00
3	GO:0006457: protein folding	7.55E-11
4	GO:0046686: response to cadmium ion	5.78E-09
5	GO:0009651: response to salt stress	1.69E-08
6	GO:0006458: 'de novo' protein folding	1.38E-05
7	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.94E-05
8	GO:1990258: histone glutamine methylation	5.94E-05
9	GO:0006407: rRNA export from nucleus	5.94E-05
10	GO:0000494: box C/D snoRNA 3'-end processing	5.94E-05
11	GO:0019510: S-adenosylhomocysteine catabolic process	5.94E-05
12	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.94E-05
13	GO:0006820: anion transport	8.25E-05
14	GO:0034976: response to endoplasmic reticulum stress	1.41E-04
15	GO:0033353: S-adenosylmethionine cycle	1.44E-04
16	GO:0015865: purine nucleotide transport	1.44E-04
17	GO:0045041: protein import into mitochondrial intermembrane space	1.44E-04
18	GO:0000027: ribosomal large subunit assembly	1.58E-04
19	GO:0061077: chaperone-mediated protein folding	1.94E-04
20	GO:0009408: response to heat	2.27E-04
21	GO:0055074: calcium ion homeostasis	2.46E-04
22	GO:0006954: inflammatory response	2.46E-04
23	GO:1902626: assembly of large subunit precursor of preribosome	2.46E-04
24	GO:0002181: cytoplasmic translation	2.46E-04
25	GO:0042256: mature ribosome assembly	2.46E-04
26	GO:0009306: protein secretion	2.55E-04
27	GO:0009793: embryo development ending in seed dormancy	2.98E-04
28	GO:0046902: regulation of mitochondrial membrane permeability	3.57E-04
29	GO:0006412: translation	3.96E-04
30	GO:0080156: mitochondrial mRNA modification	4.00E-04
31	GO:0033356: UDP-L-arabinose metabolic process	4.78E-04
32	GO:0006346: methylation-dependent chromatin silencing	4.78E-04
33	GO:0009615: response to virus	5.73E-04
34	GO:0031167: rRNA methylation	6.05E-04
35	GO:0006564: L-serine biosynthetic process	6.05E-04
36	GO:0016554: cytidine to uridine editing	7.40E-04
37	GO:0042254: ribosome biogenesis	7.85E-04
38	GO:0010043: response to zinc ion	8.51E-04
39	GO:0042026: protein refolding	8.82E-04
40	GO:0009423: chorismate biosynthetic process	8.82E-04
41	GO:0009955: adaxial/abaxial pattern specification	8.82E-04
42	GO:1901001: negative regulation of response to salt stress	8.82E-04
43	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	8.82E-04
44	GO:0071669: plant-type cell wall organization or biogenesis	1.03E-03
45	GO:0000028: ribosomal small subunit assembly	1.18E-03
46	GO:0001510: RNA methylation	1.35E-03
47	GO:0006189: 'de novo' IMP biosynthetic process	1.52E-03
48	GO:0098656: anion transmembrane transport	1.52E-03
49	GO:0006364: rRNA processing	1.57E-03
50	GO:0016441: posttranscriptional gene silencing	1.88E-03
51	GO:0010162: seed dormancy process	1.88E-03
52	GO:0006913: nucleocytoplasmic transport	2.07E-03
53	GO:0009073: aromatic amino acid family biosynthetic process	2.07E-03
54	GO:0006626: protein targeting to mitochondrion	2.47E-03
55	GO:0010075: regulation of meristem growth	2.47E-03
56	GO:0009934: regulation of meristem structural organization	2.68E-03
57	GO:0048467: gynoecium development	2.68E-03
58	GO:0009735: response to cytokinin	2.98E-03
59	GO:0000162: tryptophan biosynthetic process	3.11E-03
60	GO:0030150: protein import into mitochondrial matrix	3.34E-03
61	GO:0009944: polarity specification of adaxial/abaxial axis	3.34E-03
62	GO:0009451: RNA modification	3.89E-03
63	GO:0006730: one-carbon metabolic process	4.05E-03
64	GO:0030433: ubiquitin-dependent ERAD pathway	4.05E-03
65	GO:0007005: mitochondrion organization	4.05E-03
66	GO:0009294: DNA mediated transformation	4.30E-03
67	GO:0055085: transmembrane transport	4.51E-03
68	GO:0008033: tRNA processing	5.07E-03
69	GO:0006606: protein import into nucleus	5.07E-03
70	GO:0010197: polar nucleus fusion	5.34E-03
71	GO:0048868: pollen tube development	5.34E-03
72	GO:0009567: double fertilization forming a zygote and endosperm	7.05E-03
73	GO:0006979: response to oxidative stress	8.23E-03
74	GO:0016049: cell growth	9.25E-03
75	GO:0030244: cellulose biosynthetic process	9.59E-03
76	GO:0009832: plant-type cell wall biogenesis	9.93E-03
77	GO:0006811: ion transport	1.03E-02
78	GO:0048527: lateral root development	1.06E-02
79	GO:0015031: protein transport	1.11E-02
80	GO:0009853: photorespiration	1.13E-02
81	GO:0009409: response to cold	1.20E-02
82	GO:0006839: mitochondrial transport	1.24E-02
83	GO:0006810: transport	1.33E-02
84	GO:0000154: rRNA modification	1.47E-02
85	GO:0009555: pollen development	1.91E-02
86	GO:0016569: covalent chromatin modification	2.06E-02
87	GO:0009553: embryo sac development	2.10E-02
88	GO:0009624: response to nematode	2.15E-02
89	GO:0009845: seed germination	2.67E-02
90	GO:0006414: translational elongation	2.85E-02
91	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.44E-02
92	GO:0009617: response to bacterium	3.60E-02
93	GO:0006970: response to osmotic stress	4.56E-02
94	GO:0009723: response to ethylene	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
2	GO:0004107: chorismate synthase activity	0.00E+00
3	GO:0051082: unfolded protein binding	2.70E-14
4	GO:0003746: translation elongation factor activity	1.63E-06
5	GO:0005507: copper ion binding	1.62E-05
6	GO:0030515: snoRNA binding	1.90E-05
7	GO:0015288: porin activity	2.51E-05
8	GO:0003735: structural constituent of ribosome	3.18E-05
9	GO:0008308: voltage-gated anion channel activity	3.22E-05
10	GO:0004048: anthranilate phosphoribosyltransferase activity	5.94E-05
11	GO:1990259: histone-glutamine methyltransferase activity	5.94E-05
12	GO:0004638: phosphoribosylaminoimidazole carboxylase activity	5.94E-05
13	GO:0004013: adenosylhomocysteinase activity	5.94E-05
14	GO:0044183: protein binding involved in protein folding	7.05E-05
15	GO:0052691: UDP-arabinopyranose mutase activity	1.44E-04
16	GO:0004617: phosphoglycerate dehydrogenase activity	1.44E-04
17	GO:0008649: rRNA methyltransferase activity	2.46E-04
18	GO:0070180: large ribosomal subunit rRNA binding	2.46E-04
19	GO:0005524: ATP binding	3.85E-04
20	GO:0016866: intramolecular transferase activity	4.78E-04
21	GO:0005471: ATP:ADP antiporter activity	6.05E-04
22	GO:0002020: protease binding	6.05E-04
23	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	7.40E-04
24	GO:0050897: cobalt ion binding	8.51E-04
25	GO:0005525: GTP binding	1.18E-03
26	GO:0008135: translation factor activity, RNA binding	1.35E-03
27	GO:0051287: NAD binding	1.42E-03
28	GO:0005509: calcium ion binding	1.43E-03
29	GO:0004129: cytochrome-c oxidase activity	2.07E-03
30	GO:0008559: xenobiotic-transporting ATPase activity	2.07E-03
31	GO:0015114: phosphate ion transmembrane transporter activity	2.47E-03
32	GO:0015266: protein channel activity	2.47E-03
33	GO:0004089: carbonate dehydratase activity	2.47E-03
34	GO:0031072: heat shock protein binding	2.47E-03
35	GO:0004407: histone deacetylase activity	3.34E-03
36	GO:0003723: RNA binding	3.37E-03
37	GO:0004540: ribonuclease activity	3.81E-03
38	GO:0004298: threonine-type endopeptidase activity	3.81E-03
39	GO:0016760: cellulose synthase (UDP-forming) activity	4.30E-03
40	GO:0003756: protein disulfide isomerase activity	4.55E-03
41	GO:0030246: carbohydrate binding	4.85E-03
42	GO:0008536: Ran GTPase binding	5.34E-03
43	GO:0010181: FMN binding	5.61E-03
44	GO:0016853: isomerase activity	5.61E-03
45	GO:0008233: peptidase activity	7.14E-03
46	GO:0016597: amino acid binding	7.65E-03
47	GO:0016798: hydrolase activity, acting on glycosyl bonds	8.92E-03
48	GO:0003924: GTPase activity	1.07E-02
49	GO:0003697: single-stranded DNA binding	1.13E-02
50	GO:0005515: protein binding	1.35E-02
51	GO:0003729: mRNA binding	1.35E-02
52	GO:0016887: ATPase activity	1.67E-02
53	GO:0019843: rRNA binding	2.52E-02
54	GO:0008565: protein transporter activity	2.86E-02
55	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.76E-02

Rank	GO Term	Adjusted P value
1	GO:0005832: chaperonin-containing T-complex	0.00E+00
2	GO:0005774: vacuolar membrane	6.47E-16
3	GO:0005730: nucleolus	4.83E-10
4	GO:0005773: vacuole	1.20E-09
5	GO:0009506: plasmodesma	2.79E-09
6	GO:0005788: endoplasmic reticulum lumen	8.02E-09
7	GO:0005739: mitochondrion	1.62E-08
8	GO:0005783: endoplasmic reticulum	6.53E-07
9	GO:0005829: cytosol	1.02E-06
10	GO:0022626: cytosolic ribosome	5.27E-06
11	GO:0005886: plasma membrane	7.69E-06
12	GO:0031428: box C/D snoRNP complex	9.58E-06
13	GO:0005742: mitochondrial outer membrane translocase complex	3.22E-05
14	GO:0046930: pore complex	3.22E-05
15	GO:0009507: chloroplast	3.25E-05
16	GO:0005618: cell wall	3.56E-05
17	GO:0000138: Golgi trans cisterna	5.94E-05
18	GO:0030686: 90S preribosome	5.94E-05
19	GO:0032040: small-subunit processome	8.25E-05
20	GO:0022625: cytosolic large ribosomal subunit	1.27E-04
21	GO:0005747: mitochondrial respiratory chain complex I	1.74E-04
22	GO:0005741: mitochondrial outer membrane	1.94E-04
23	GO:0016020: membrane	2.08E-04
24	GO:0048046: apoplast	7.50E-04
25	GO:0015934: large ribosomal subunit	8.51E-04
26	GO:0016363: nuclear matrix	8.82E-04
27	GO:0009941: chloroplast envelope	1.24E-03
28	GO:0019773: proteasome core complex, alpha-subunit complex	1.35E-03
29	GO:0005743: mitochondrial inner membrane	1.48E-03
30	GO:0005635: nuclear envelope	1.68E-03
31	GO:0015030: Cajal body	1.69E-03
32	GO:0005840: ribosome	1.74E-03
33	GO:0005740: mitochondrial envelope	1.88E-03
34	GO:0005795: Golgi stack	2.89E-03
35	GO:0045271: respiratory chain complex I	3.57E-03
36	GO:0015935: small ribosomal subunit	3.81E-03
37	GO:0005839: proteasome core complex	3.81E-03
38	GO:0016592: mediator complex	6.46E-03
39	GO:0009570: chloroplast stroma	8.34E-03
40	GO:0000325: plant-type vacuole	1.06E-02
41	GO:0009536: plastid	1.06E-02
42	GO:0009505: plant-type cell wall	1.09E-02
43	GO:0031966: mitochondrial membrane	1.59E-02
44	GO:0000502: proteasome complex	1.67E-02
45	GO:0005737: cytoplasm	2.74E-02
46	GO:0005759: mitochondrial matrix	2.97E-02
47	GO:0022627: cytosolic small ribosomal subunit	3.87E-02