Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G37080

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0007638: mechanosensory behavior0.00E+00
4GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
5GO:0006085: acetyl-CoA biosynthetic process6.35E-05
6GO:0010207: photosystem II assembly7.33E-05
7GO:0010190: cytochrome b6f complex assembly1.45E-04
8GO:0042549: photosystem II stabilization1.45E-04
9GO:0071555: cell wall organization1.52E-04
10GO:0009645: response to low light intensity stimulus2.57E-04
11GO:0016117: carotenoid biosynthetic process2.61E-04
12GO:0042335: cuticle development2.90E-04
13GO:0000413: protein peptidyl-prolyl isomerization2.90E-04
14GO:0010442: guard cell morphogenesis3.14E-04
15GO:0071370: cellular response to gibberellin stimulus3.14E-04
16GO:0042371: vitamin K biosynthetic process3.14E-04
17GO:0010583: response to cyclopentenone4.63E-04
18GO:0048829: root cap development6.60E-04
19GO:0052541: plant-type cell wall cellulose metabolic process6.87E-04
20GO:0006695: cholesterol biosynthetic process6.87E-04
21GO:0006650: glycerophospholipid metabolic process6.87E-04
22GO:0060919: auxin influx6.87E-04
23GO:2000123: positive regulation of stomatal complex development6.87E-04
24GO:0010270: photosystem II oxygen evolving complex assembly6.87E-04
25GO:0006816: calcium ion transport7.62E-04
26GO:0009773: photosynthetic electron transport in photosystem I7.62E-04
27GO:0006415: translational termination7.62E-04
28GO:0010411: xyloglucan metabolic process8.37E-04
29GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.05E-03
30GO:0010020: chloroplast fission1.11E-03
31GO:0010581: regulation of starch biosynthetic process1.11E-03
32GO:0070828: heterochromatin organization1.11E-03
33GO:0006696: ergosterol biosynthetic process1.11E-03
34GO:0090506: axillary shoot meristem initiation1.11E-03
35GO:0015979: photosynthesis1.24E-03
36GO:0006833: water transport1.37E-03
37GO:0006633: fatty acid biosynthetic process1.40E-03
38GO:0006810: transport1.42E-03
39GO:0019344: cysteine biosynthetic process1.52E-03
40GO:0009855: determination of bilateral symmetry1.60E-03
41GO:0043572: plastid fission1.60E-03
42GO:0007231: osmosensory signaling pathway1.60E-03
43GO:0009768: photosynthesis, light harvesting in photosystem I1.68E-03
44GO:0003333: amino acid transmembrane transport1.84E-03
45GO:0042546: cell wall biogenesis1.85E-03
46GO:0006730: one-carbon metabolic process2.02E-03
47GO:0009765: photosynthesis, light harvesting2.14E-03
48GO:2000122: negative regulation of stomatal complex development2.14E-03
49GO:0033500: carbohydrate homeostasis2.14E-03
50GO:2000038: regulation of stomatal complex development2.14E-03
51GO:0006546: glycine catabolic process2.14E-03
52GO:0042991: transcription factor import into nucleus2.14E-03
53GO:0010037: response to carbon dioxide2.14E-03
54GO:0015976: carbon utilization2.14E-03
55GO:0010375: stomatal complex patterning2.74E-03
56GO:0016120: carotene biosynthetic process2.74E-03
57GO:0016123: xanthophyll biosynthetic process2.74E-03
58GO:0034220: ion transmembrane transport2.80E-03
59GO:0009658: chloroplast organization3.14E-03
60GO:0010358: leaf shaping3.38E-03
61GO:0016554: cytidine to uridine editing3.38E-03
62GO:0006828: manganese ion transport3.38E-03
63GO:0032973: amino acid export3.38E-03
64GO:0006014: D-ribose metabolic process3.38E-03
65GO:0006555: methionine metabolic process3.38E-03
66GO:0080060: integument development4.06E-03
67GO:0010014: meristem initiation4.06E-03
68GO:0042372: phylloquinone biosynthetic process4.06E-03
69GO:0010067: procambium histogenesis4.06E-03
70GO:0009612: response to mechanical stimulus4.06E-03
71GO:0010555: response to mannitol4.06E-03
72GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity4.06E-03
73GO:0009955: adaxial/abaxial pattern specification4.06E-03
74GO:0007267: cell-cell signaling4.79E-03
75GO:0043090: amino acid import4.80E-03
76GO:0009642: response to light intensity5.57E-03
77GO:0009690: cytokinin metabolic process5.57E-03
78GO:0007155: cell adhesion5.57E-03
79GO:0042128: nitrate assimilation6.00E-03
80GO:0019430: removal of superoxide radicals6.39E-03
81GO:0009657: plastid organization6.39E-03
82GO:0032544: plastid translation6.39E-03
83GO:0009932: cell tip growth6.39E-03
84GO:0018298: protein-chromophore linkage7.02E-03
85GO:0045337: farnesyl diphosphate biosynthetic process7.24E-03
86GO:0080144: amino acid homeostasis7.24E-03
87GO:0033384: geranyl diphosphate biosynthetic process7.24E-03
88GO:0006754: ATP biosynthetic process7.24E-03
89GO:0000902: cell morphogenesis7.24E-03
90GO:0035999: tetrahydrofolate interconversion8.14E-03
91GO:0042761: very long-chain fatty acid biosynthetic process8.14E-03
92GO:1900865: chloroplast RNA modification8.14E-03
93GO:0010380: regulation of chlorophyll biosynthetic process8.14E-03
94GO:0016573: histone acetylation8.14E-03
95GO:0006865: amino acid transport8.51E-03
96GO:0016051: carbohydrate biosynthetic process8.90E-03
97GO:0009870: defense response signaling pathway, resistance gene-dependent9.07E-03
98GO:0006535: cysteine biosynthetic process from serine9.07E-03
99GO:0043069: negative regulation of programmed cell death9.07E-03
100GO:0019684: photosynthesis, light reaction1.00E-02
101GO:0010072: primary shoot apical meristem specification1.00E-02
102GO:0009089: lysine biosynthetic process via diaminopimelate1.00E-02
103GO:0043085: positive regulation of catalytic activity1.00E-02
104GO:0000038: very long-chain fatty acid metabolic process1.00E-02
105GO:0006631: fatty acid metabolic process1.06E-02
106GO:0006790: sulfur compound metabolic process1.11E-02
107GO:0050826: response to freezing1.21E-02
108GO:0009767: photosynthetic electron transport chain1.21E-02
109GO:0010143: cutin biosynthetic process1.32E-02
110GO:0010223: secondary shoot formation1.32E-02
111GO:0010167: response to nitrate1.43E-02
112GO:0005985: sucrose metabolic process1.43E-02
113GO:0090351: seedling development1.43E-02
114GO:0070588: calcium ion transmembrane transport1.43E-02
115GO:0046854: phosphatidylinositol phosphorylation1.43E-02
116GO:0010025: wax biosynthetic process1.54E-02
117GO:0006636: unsaturated fatty acid biosynthetic process1.54E-02
118GO:0006071: glycerol metabolic process1.54E-02
119GO:0009736: cytokinin-activated signaling pathway1.55E-02
120GO:0006813: potassium ion transport1.55E-02
121GO:0009735: response to cytokinin1.64E-02
122GO:0009944: polarity specification of adaxial/abaxial axis1.66E-02
123GO:0000027: ribosomal large subunit assembly1.66E-02
124GO:0006338: chromatin remodeling1.66E-02
125GO:0007010: cytoskeleton organization1.66E-02
126GO:0006418: tRNA aminoacylation for protein translation1.78E-02
127GO:0010026: trichome differentiation1.78E-02
128GO:0007017: microtubule-based process1.78E-02
129GO:0061077: chaperone-mediated protein folding1.91E-02
130GO:0046777: protein autophosphorylation2.02E-02
131GO:0080092: regulation of pollen tube growth2.03E-02
132GO:0030245: cellulose catabolic process2.03E-02
133GO:0042545: cell wall modification2.15E-02
134GO:0009294: DNA mediated transformation2.16E-02
135GO:0001944: vasculature development2.16E-02
136GO:0006284: base-excision repair2.29E-02
137GO:0019722: calcium-mediated signaling2.29E-02
138GO:0010089: xylem development2.29E-02
139GO:0045454: cell redox homeostasis2.33E-02
140GO:0000271: polysaccharide biosynthetic process2.57E-02
141GO:0080022: primary root development2.57E-02
142GO:0010087: phloem or xylem histogenesis2.57E-02
143GO:0006869: lipid transport2.61E-02
144GO:0055085: transmembrane transport2.67E-02
145GO:0045489: pectin biosynthetic process2.71E-02
146GO:0006342: chromatin silencing2.71E-02
147GO:0009741: response to brassinosteroid2.71E-02
148GO:0010268: brassinosteroid homeostasis2.71E-02
149GO:0006457: protein folding2.75E-02
150GO:0048825: cotyledon development3.00E-02
151GO:0019252: starch biosynthetic process3.00E-02
152GO:0008654: phospholipid biosynthetic process3.00E-02
153GO:0006629: lipid metabolic process3.02E-02
154GO:0071554: cell wall organization or biogenesis3.15E-02
155GO:0016132: brassinosteroid biosynthetic process3.15E-02
156GO:0032502: developmental process3.30E-02
157GO:1901657: glycosyl compound metabolic process3.45E-02
158GO:0016125: sterol metabolic process3.61E-02
159GO:0071805: potassium ion transmembrane transport3.77E-02
160GO:0045490: pectin catabolic process3.83E-02
161GO:0016126: sterol biosynthetic process4.09E-02
162GO:0010027: thylakoid membrane organization4.09E-02
163GO:0055114: oxidation-reduction process4.34E-02
164GO:0007166: cell surface receptor signaling pathway4.37E-02
165GO:0009617: response to bacterium4.56E-02
166GO:0048481: plant ovule development4.93E-02
RankGO TermAdjusted P value
1GO:0048307: ferredoxin-nitrite reductase activity0.00E+00
2GO:0050613: delta14-sterol reductase activity0.00E+00
3GO:0045435: lycopene epsilon cyclase activity0.00E+00
4GO:0004822: isoleucine-tRNA ligase activity0.00E+00
5GO:0050421: nitrite reductase (NO-forming) activity0.00E+00
6GO:0046905: phytoene synthase activity0.00E+00
7GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
8GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
9GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
10GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
11GO:0047889: ferredoxin-nitrate reductase activity0.00E+00
12GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
13GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.12E-06
14GO:0003878: ATP citrate synthase activity3.55E-05
15GO:0016149: translation release factor activity, codon specific3.55E-05
16GO:0010328: auxin influx transmembrane transporter activity6.35E-05
17GO:0051753: mannan synthase activity1.97E-04
18GO:0004723: calcium-dependent protein serine/threonine phosphatase activity1.97E-04
19GO:0051920: peroxiredoxin activity1.97E-04
20GO:0080132: fatty acid alpha-hydroxylase activity3.14E-04
21GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity3.14E-04
22GO:0051996: squalene synthase activity3.14E-04
23GO:0010012: steroid 22-alpha hydroxylase activity3.14E-04
24GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.14E-04
25GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer3.14E-04
26GO:0016209: antioxidant activity3.24E-04
27GO:0016762: xyloglucan:xyloglucosyl transferase activity4.24E-04
28GO:0003747: translation release factor activity4.78E-04
29GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.87E-04
30GO:0004310: farnesyl-diphosphate farnesyltransferase activity6.87E-04
31GO:0050017: L-3-cyanoalanine synthase activity6.87E-04
32GO:0042389: omega-3 fatty acid desaturase activity6.87E-04
33GO:0004326: tetrahydrofolylpolyglutamate synthase activity6.87E-04
34GO:0004047: aminomethyltransferase activity6.87E-04
35GO:0016798: hydrolase activity, acting on glycosyl bonds8.37E-04
36GO:0070330: aromatase activity1.11E-03
37GO:0050734: hydroxycinnamoyltransferase activity1.11E-03
38GO:0002161: aminoacyl-tRNA editing activity1.11E-03
39GO:0030267: glyoxylate reductase (NADP) activity1.11E-03
40GO:0031409: pigment binding1.37E-03
41GO:0005528: FK506 binding1.52E-03
42GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.60E-03
43GO:0004659: prenyltransferase activity2.14E-03
44GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.56E-03
45GO:0008374: O-acyltransferase activity2.74E-03
46GO:0018685: alkane 1-monooxygenase activity2.74E-03
47GO:0008725: DNA-3-methyladenine glycosylase activity2.74E-03
48GO:0015171: amino acid transmembrane transporter activity2.93E-03
49GO:0016208: AMP binding3.38E-03
50GO:0019901: protein kinase binding3.47E-03
51GO:0030599: pectinesterase activity3.73E-03
52GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.06E-03
53GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.06E-03
54GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.06E-03
55GO:0004747: ribokinase activity4.06E-03
56GO:0004124: cysteine synthase activity4.06E-03
57GO:0016722: oxidoreductase activity, oxidizing metal ions4.79E-03
58GO:0005509: calcium ion binding5.07E-03
59GO:0015250: water channel activity5.37E-03
60GO:0008865: fructokinase activity5.57E-03
61GO:0004564: beta-fructofuranosidase activity5.57E-03
62GO:0016168: chlorophyll binding5.68E-03
63GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water6.39E-03
64GO:0004337: geranyltranstransferase activity7.24E-03
65GO:0008889: glycerophosphodiester phosphodiesterase activity7.24E-03
66GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.24E-03
67GO:0004575: sucrose alpha-glucosidase activity8.14E-03
68GO:0005384: manganese ion transmembrane transporter activity8.14E-03
69GO:0008047: enzyme activator activity9.07E-03
70GO:0005089: Rho guanyl-nucleotide exchange factor activity1.00E-02
71GO:0004161: dimethylallyltranstransferase activity1.00E-02
72GO:0000049: tRNA binding1.11E-02
73GO:0004089: carbonate dehydratase activity1.21E-02
74GO:0015095: magnesium ion transmembrane transporter activity1.21E-02
75GO:0031072: heat shock protein binding1.21E-02
76GO:0005262: calcium channel activity1.21E-02
77GO:0004672: protein kinase activity1.25E-02
78GO:0051537: 2 iron, 2 sulfur cluster binding1.25E-02
79GO:0015293: symporter activity1.29E-02
80GO:0008289: lipid binding1.30E-02
81GO:0008083: growth factor activity1.32E-02
82GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.54E-02
83GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.54E-02
84GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.54E-02
85GO:0004857: enzyme inhibitor activity1.66E-02
86GO:0045330: aspartyl esterase activity1.72E-02
87GO:0015079: potassium ion transmembrane transporter activity1.78E-02
88GO:0008324: cation transmembrane transporter activity1.78E-02
89GO:0004176: ATP-dependent peptidase activity1.91E-02
90GO:0033612: receptor serine/threonine kinase binding1.91E-02
91GO:0019706: protein-cysteine S-palmitoyltransferase activity1.91E-02
92GO:0004650: polygalacturonase activity2.02E-02
93GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.03E-02
94GO:0052689: carboxylic ester hydrolase activity2.10E-02
95GO:0008810: cellulase activity2.16E-02
96GO:0003756: protein disulfide isomerase activity2.29E-02
97GO:0004812: aminoacyl-tRNA ligase activity2.43E-02
98GO:0005102: receptor binding2.43E-02
99GO:0016740: transferase activity2.52E-02
100GO:0016787: hydrolase activity2.57E-02
101GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.85E-02
102GO:0004791: thioredoxin-disulfide reductase activity2.85E-02
103GO:0009055: electron carrier activity3.30E-02
104GO:0000156: phosphorelay response regulator activity3.45E-02
105GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.45E-02
106GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.57E-02
107GO:0008483: transaminase activity3.77E-02
108GO:0008237: metallopeptidase activity3.77E-02
109GO:0005200: structural constituent of cytoskeleton3.77E-02
110GO:0016413: O-acetyltransferase activity3.92E-02
111GO:0046872: metal ion binding4.20E-02
112GO:0009931: calcium-dependent protein serine/threonine kinase activity4.42E-02
113GO:0102483: scopolin beta-glucosidase activity4.59E-02
114GO:0004683: calmodulin-dependent protein kinase activity4.59E-02
115GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding4.76E-02
116GO:0008236: serine-type peptidase activity4.76E-02
117GO:0042802: identical protein binding4.84E-02
RankGO TermAdjusted P value
1GO:0031224: intrinsic component of membrane0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009535: chloroplast thylakoid membrane6.40E-13
4GO:0009543: chloroplast thylakoid lumen5.65E-12
5GO:0009507: chloroplast1.95E-11
6GO:0009941: chloroplast envelope3.44E-09
7GO:0031977: thylakoid lumen4.07E-08
8GO:0046658: anchored component of plasma membrane5.26E-08
9GO:0009570: chloroplast stroma2.71E-07
10GO:0048046: apoplast7.25E-07
11GO:0009534: chloroplast thylakoid3.89E-06
12GO:0009654: photosystem II oxygen evolving complex5.74E-06
13GO:0031225: anchored component of membrane1.14E-05
14GO:0009505: plant-type cell wall1.47E-05
15GO:0009579: thylakoid2.61E-05
16GO:0019898: extrinsic component of membrane2.77E-05
17GO:0009346: citrate lyase complex3.55E-05
18GO:0030095: chloroplast photosystem II7.33E-05
19GO:0005886: plasma membrane2.23E-04
20GO:0005576: extracellular region2.49E-04
21GO:0009782: photosystem I antenna complex3.14E-04
22GO:0009344: nitrite reductase complex [NAD(P)H]3.14E-04
23GO:0005618: cell wall3.27E-04
24GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.78E-04
25GO:0042170: plastid membrane6.87E-04
26GO:0000792: heterochromatin6.87E-04
27GO:0010287: plastoglobule9.16E-04
28GO:0030076: light-harvesting complex1.24E-03
29GO:0005875: microtubule associated complex1.37E-03
30GO:0005775: vacuolar lumen1.60E-03
31GO:0016021: integral component of membrane1.83E-03
32GO:0016020: membrane2.68E-03
33GO:0000139: Golgi membrane3.61E-03
34GO:0009706: chloroplast inner membrane4.03E-03
35GO:0031969: chloroplast membrane4.37E-03
36GO:0000123: histone acetyltransferase complex4.80E-03
37GO:0009533: chloroplast stromal thylakoid4.80E-03
38GO:0045298: tubulin complex7.24E-03
39GO:0016324: apical plasma membrane9.07E-03
40GO:0009508: plastid chromosome1.21E-02
41GO:0030659: cytoplasmic vesicle membrane1.32E-02
42GO:0030176: integral component of endoplasmic reticulum membrane1.43E-02
43GO:0005874: microtubule1.77E-02
44GO:0042651: thylakoid membrane1.78E-02
45GO:0009532: plastid stroma1.91E-02
46GO:0000790: nuclear chromatin2.43E-02
47GO:0009506: plasmodesma2.75E-02
48GO:0009522: photosystem I2.85E-02
49GO:0009523: photosystem II3.00E-02
50GO:0009295: nucleoid3.77E-02
51GO:0005778: peroxisomal membrane3.77E-02
52GO:0010319: stromule3.77E-02
53GO:0005615: extracellular space4.28E-02
54GO:0005887: integral component of plasma membrane4.40E-02
Gene type



Gene DE type