Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G37040

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002184: cytoplasmic translational termination0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
5GO:0033494: ferulate metabolic process0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0015805: S-adenosyl-L-methionine transport0.00E+00
8GO:0061635: regulation of protein complex stability0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
12GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
13GO:0090042: tubulin deacetylation0.00E+00
14GO:0042493: response to drug0.00E+00
15GO:0042371: vitamin K biosynthetic process0.00E+00
16GO:0006399: tRNA metabolic process0.00E+00
17GO:0015979: photosynthesis3.81E-16
18GO:0006412: translation3.24E-13
19GO:0032544: plastid translation3.55E-13
20GO:0009773: photosynthetic electron transport in photosystem I8.63E-10
21GO:0042254: ribosome biogenesis9.04E-10
22GO:0009735: response to cytokinin4.02E-08
23GO:0009658: chloroplast organization1.46E-07
24GO:0010207: photosystem II assembly8.61E-06
25GO:0030388: fructose 1,6-bisphosphate metabolic process1.03E-05
26GO:0010027: thylakoid membrane organization1.71E-05
27GO:0010196: nonphotochemical quenching1.74E-05
28GO:0006000: fructose metabolic process3.51E-05
29GO:0071482: cellular response to light stimulus3.64E-05
30GO:0015976: carbon utilization1.31E-04
31GO:2000122: negative regulation of stomatal complex development1.31E-04
32GO:0006546: glycine catabolic process1.31E-04
33GO:0010037: response to carbon dioxide1.31E-04
34GO:0006094: gluconeogenesis1.56E-04
35GO:0019253: reductive pentose-phosphate cycle1.87E-04
36GO:0042549: photosystem II stabilization2.85E-04
37GO:0010190: cytochrome b6f complex assembly2.85E-04
38GO:0018298: protein-chromophore linkage3.22E-04
39GO:0042372: phylloquinone biosynthetic process3.82E-04
40GO:0061077: chaperone-mediated protein folding3.85E-04
41GO:0034337: RNA folding4.84E-04
42GO:0071588: hydrogen peroxide mediated signaling pathway4.84E-04
43GO:0016031: tRNA import into mitochondrion4.84E-04
44GO:0043489: RNA stabilization4.84E-04
45GO:1904966: positive regulation of vitamin E biosynthetic process4.84E-04
46GO:0000481: maturation of 5S rRNA4.84E-04
47GO:1904964: positive regulation of phytol biosynthetic process4.84E-04
48GO:0016117: carotenoid biosynthetic process6.03E-04
49GO:0000413: protein peptidyl-prolyl isomerization6.66E-04
50GO:0009409: response to cold7.36E-04
51GO:0006002: fructose 6-phosphate metabolic process7.45E-04
52GO:0009657: plastid organization7.45E-04
53GO:0010024: phytochromobilin biosynthetic process1.04E-03
54GO:0010115: regulation of abscisic acid biosynthetic process1.04E-03
55GO:1902326: positive regulation of chlorophyll biosynthetic process1.04E-03
56GO:0034755: iron ion transmembrane transport1.04E-03
57GO:0045454: cell redox homeostasis1.13E-03
58GO:0043085: positive regulation of catalytic activity1.41E-03
59GO:0006352: DNA-templated transcription, initiation1.41E-03
60GO:0009750: response to fructose1.41E-03
61GO:0006415: translational termination1.41E-03
62GO:0006954: inflammatory response1.70E-03
63GO:0090391: granum assembly1.70E-03
64GO:0006518: peptide metabolic process1.70E-03
65GO:0010581: regulation of starch biosynthetic process1.70E-03
66GO:0006788: heme oxidation1.70E-03
67GO:0071492: cellular response to UV-A1.70E-03
68GO:0006696: ergosterol biosynthetic process1.70E-03
69GO:0005986: sucrose biosynthetic process1.84E-03
70GO:0015995: chlorophyll biosynthetic process1.87E-03
71GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.47E-03
72GO:0007231: osmosensory signaling pathway2.47E-03
73GO:0009152: purine ribonucleotide biosynthetic process2.47E-03
74GO:0046653: tetrahydrofolate metabolic process2.47E-03
75GO:0009650: UV protection2.47E-03
76GO:0006424: glutamyl-tRNA aminoacylation2.47E-03
77GO:0010088: phloem development2.47E-03
78GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.47E-03
79GO:2001141: regulation of RNA biosynthetic process2.47E-03
80GO:0006810: transport2.52E-03
81GO:0006457: protein folding2.91E-03
82GO:0009768: photosynthesis, light harvesting in photosystem I3.17E-03
83GO:0071486: cellular response to high light intensity3.32E-03
84GO:0019464: glycine decarboxylation via glycine cleavage system3.32E-03
85GO:0009765: photosynthesis, light harvesting3.32E-03
86GO:0045727: positive regulation of translation3.32E-03
87GO:0015994: chlorophyll metabolic process3.32E-03
88GO:0033500: carbohydrate homeostasis3.32E-03
89GO:0071483: cellular response to blue light3.32E-03
90GO:0006461: protein complex assembly4.26E-03
91GO:0016123: xanthophyll biosynthetic process4.26E-03
92GO:0080110: sporopollenin biosynthetic process4.26E-03
93GO:0032543: mitochondrial translation4.26E-03
94GO:0006564: L-serine biosynthetic process4.26E-03
95GO:0016120: carotene biosynthetic process4.26E-03
96GO:0010236: plastoquinone biosynthetic process4.26E-03
97GO:0009644: response to high light intensity4.42E-03
98GO:0006869: lipid transport5.00E-03
99GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.27E-03
100GO:0000470: maturation of LSU-rRNA5.27E-03
101GO:0016554: cytidine to uridine editing5.27E-03
102GO:0033365: protein localization to organelle5.27E-03
103GO:0006561: proline biosynthetic process5.27E-03
104GO:0042335: cuticle development5.32E-03
105GO:0010555: response to mannitol6.36E-03
106GO:0009955: adaxial/abaxial pattern specification6.36E-03
107GO:0006458: 'de novo' protein folding6.36E-03
108GO:0042026: protein refolding6.36E-03
109GO:1901259: chloroplast rRNA processing6.36E-03
110GO:0009854: oxidative photosynthetic carbon pathway6.36E-03
111GO:0010019: chloroplast-nucleus signaling pathway6.36E-03
112GO:0006096: glycolytic process7.26E-03
113GO:0009772: photosynthetic electron transport in photosystem II7.52E-03
114GO:0009645: response to low light intensity stimulus7.52E-03
115GO:0006400: tRNA modification7.52E-03
116GO:0042742: defense response to bacterium7.69E-03
117GO:0048564: photosystem I assembly8.76E-03
118GO:0030091: protein repair8.76E-03
119GO:0009819: drought recovery8.76E-03
120GO:0009642: response to light intensity8.76E-03
121GO:0032508: DNA duplex unwinding8.76E-03
122GO:0019430: removal of superoxide radicals1.01E-02
123GO:0017004: cytochrome complex assembly1.01E-02
124GO:0090305: nucleic acid phosphodiester bond hydrolysis1.14E-02
125GO:0006098: pentose-phosphate shunt1.14E-02
126GO:0010206: photosystem II repair1.14E-02
127GO:0000373: Group II intron splicing1.14E-02
128GO:0006779: porphyrin-containing compound biosynthetic process1.29E-02
129GO:1900865: chloroplast RNA modification1.29E-02
130GO:0010380: regulation of chlorophyll biosynthetic process1.29E-02
131GO:0009817: defense response to fungus, incompatible interaction1.35E-02
132GO:0006949: syncytium formation1.44E-02
133GO:0006782: protoporphyrinogen IX biosynthetic process1.44E-02
134GO:0009688: abscisic acid biosynthetic process1.44E-02
135GO:0043069: negative regulation of programmed cell death1.44E-02
136GO:0010119: regulation of stomatal movement1.56E-02
137GO:0009631: cold acclimation1.56E-02
138GO:0019684: photosynthesis, light reaction1.59E-02
139GO:0006816: calcium ion transport1.59E-02
140GO:0009089: lysine biosynthetic process via diaminopimelate1.59E-02
141GO:0009073: aromatic amino acid family biosynthetic process1.59E-02
142GO:0006879: cellular iron ion homeostasis1.59E-02
143GO:0018119: peptidyl-cysteine S-nitrosylation1.59E-02
144GO:0009853: photorespiration1.71E-02
145GO:0009637: response to blue light1.71E-02
146GO:0006790: sulfur compound metabolic process1.75E-02
147GO:0005983: starch catabolic process1.75E-02
148GO:0034599: cellular response to oxidative stress1.79E-02
149GO:0009767: photosynthetic electron transport chain1.92E-02
150GO:0006006: glucose metabolic process1.92E-02
151GO:0006839: mitochondrial transport1.96E-02
152GO:0010143: cutin biosynthetic process2.09E-02
153GO:0010020: chloroplast fission2.09E-02
154GO:0010114: response to red light2.21E-02
155GO:0005985: sucrose metabolic process2.27E-02
156GO:0090351: seedling development2.27E-02
157GO:0070588: calcium ion transmembrane transport2.27E-02
158GO:0046854: phosphatidylinositol phosphorylation2.27E-02
159GO:0055114: oxidation-reduction process2.47E-02
160GO:0019344: cysteine biosynthetic process2.64E-02
161GO:0000027: ribosomal large subunit assembly2.64E-02
162GO:0016575: histone deacetylation2.83E-02
163GO:0006418: tRNA aminoacylation for protein translation2.83E-02
164GO:0007017: microtubule-based process2.83E-02
165GO:0051603: proteolysis involved in cellular protein catabolic process3.09E-02
166GO:0030245: cellulose catabolic process3.23E-02
167GO:0016226: iron-sulfur cluster assembly3.23E-02
168GO:0007005: mitochondrion organization3.23E-02
169GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.44E-02
170GO:0009411: response to UV3.44E-02
171GO:0010584: pollen exine formation3.65E-02
172GO:0019722: calcium-mediated signaling3.65E-02
173GO:0006662: glycerol ether metabolic process4.31E-02
174GO:0010182: sugar mediated signaling pathway4.31E-02
175GO:0006396: RNA processing4.36E-02
176GO:0007018: microtubule-based movement4.54E-02
177GO:0000302: response to reactive oxygen species5.00E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
3GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
4GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
5GO:0008887: glycerate kinase activity0.00E+00
6GO:0010301: xanthoxin dehydrogenase activity0.00E+00
7GO:0051721: protein phosphatase 2A binding0.00E+00
8GO:0043014: alpha-tubulin binding0.00E+00
9GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
10GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
11GO:0042903: tubulin deacetylase activity0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0045435: lycopene epsilon cyclase activity0.00E+00
14GO:0004822: isoleucine-tRNA ligase activity0.00E+00
15GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
16GO:0046905: phytoene synthase activity0.00E+00
17GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
18GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
19GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
20GO:0019843: rRNA binding5.44E-19
21GO:0003735: structural constituent of ribosome1.97E-14
22GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.13E-12
23GO:0005528: FK506 binding1.19E-08
24GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity1.03E-05
25GO:0051920: peroxiredoxin activity1.10E-05
26GO:0016168: chlorophyll binding1.96E-05
27GO:0016209: antioxidant activity2.58E-05
28GO:0016149: translation release factor activity, codon specific7.55E-05
29GO:0001053: plastid sigma factor activity1.31E-04
30GO:0016987: sigma factor activity1.31E-04
31GO:0004659: prenyltransferase activity1.31E-04
32GO:0008266: poly(U) RNA binding1.87E-04
33GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.82E-04
34GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity4.84E-04
35GO:0030794: (S)-coclaurine-N-methyltransferase activity4.84E-04
36GO:0009496: plastoquinol--plastocyanin reductase activity4.84E-04
37GO:0080132: fatty acid alpha-hydroxylase activity4.84E-04
38GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity4.84E-04
39GO:0051996: squalene synthase activity4.84E-04
40GO:0022891: substrate-specific transmembrane transporter activity4.87E-04
41GO:0003747: translation release factor activity8.92E-04
42GO:0004618: phosphoglycerate kinase activity1.04E-03
43GO:0004617: phosphoglycerate dehydrogenase activity1.04E-03
44GO:0004047: aminomethyltransferase activity1.04E-03
45GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.04E-03
46GO:0016630: protochlorophyllide reductase activity1.04E-03
47GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.04E-03
48GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.04E-03
49GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.04E-03
50GO:0008967: phosphoglycolate phosphatase activity1.04E-03
51GO:0047746: chlorophyllase activity1.04E-03
52GO:0008047: enzyme activator activity1.22E-03
53GO:0008864: formyltetrahydrofolate deformylase activity1.70E-03
54GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.70E-03
55GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity1.70E-03
56GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity1.70E-03
57GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.70E-03
58GO:0050734: hydroxycinnamoyltransferase activity1.70E-03
59GO:0002161: aminoacyl-tRNA editing activity1.70E-03
60GO:0004148: dihydrolipoyl dehydrogenase activity1.70E-03
61GO:0030267: glyoxylate reductase (NADP) activity1.70E-03
62GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.70E-03
63GO:0031072: heat shock protein binding1.84E-03
64GO:0004089: carbonate dehydratase activity1.84E-03
65GO:0005509: calcium ion binding2.24E-03
66GO:0008097: 5S rRNA binding2.47E-03
67GO:0001872: (1->3)-beta-D-glucan binding2.47E-03
68GO:0004375: glycine dehydrogenase (decarboxylating) activity2.47E-03
69GO:0048487: beta-tubulin binding2.47E-03
70GO:0043023: ribosomal large subunit binding2.47E-03
71GO:0031409: pigment binding2.59E-03
72GO:0046872: metal ion binding3.14E-03
73GO:0005319: lipid transporter activity3.32E-03
74GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.32E-03
75GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.32E-03
76GO:0004045: aminoacyl-tRNA hydrolase activity3.32E-03
77GO:1990137: plant seed peroxidase activity3.32E-03
78GO:0004392: heme oxygenase (decyclizing) activity3.32E-03
79GO:0043495: protein anchor3.32E-03
80GO:0003959: NADPH dehydrogenase activity4.26E-03
81GO:0016773: phosphotransferase activity, alcohol group as acceptor4.26E-03
82GO:0004040: amidase activity4.26E-03
83GO:0051537: 2 iron, 2 sulfur cluster binding4.42E-03
84GO:0043621: protein self-association4.42E-03
85GO:0004332: fructose-bisphosphate aldolase activity5.27E-03
86GO:0016208: AMP binding5.27E-03
87GO:0004130: cytochrome-c peroxidase activity5.27E-03
88GO:0016688: L-ascorbate peroxidase activity5.27E-03
89GO:0004791: thioredoxin-disulfide reductase activity6.17E-03
90GO:0050662: coenzyme binding6.17E-03
91GO:0033743: peptide-methionine (R)-S-oxide reductase activity6.36E-03
92GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.36E-03
93GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.36E-03
94GO:0019899: enzyme binding7.52E-03
95GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor8.09E-03
96GO:0004601: peroxidase activity8.45E-03
97GO:0016788: hydrolase activity, acting on ester bonds8.69E-03
98GO:0004033: aldo-keto reductase (NADP) activity8.76E-03
99GO:0051082: unfolded protein binding9.20E-03
100GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.01E-02
101GO:0008236: serine-type peptidase activity1.28E-02
102GO:0005381: iron ion transmembrane transporter activity1.29E-02
103GO:0047617: acyl-CoA hydrolase activity1.29E-02
104GO:0004222: metalloendopeptidase activity1.49E-02
105GO:0044183: protein binding involved in protein folding1.59E-02
106GO:0015386: potassium:proton antiporter activity1.59E-02
107GO:0000049: tRNA binding1.75E-02
108GO:0005262: calcium channel activity1.92E-02
109GO:0004022: alcohol dehydrogenase (NAD) activity1.92E-02
110GO:0015266: protein channel activity1.92E-02
111GO:0003723: RNA binding1.99E-02
112GO:0004185: serine-type carboxypeptidase activity2.21E-02
113GO:0009055: electron carrier activity2.34E-02
114GO:0051536: iron-sulfur cluster binding2.64E-02
115GO:0004857: enzyme inhibitor activity2.64E-02
116GO:0004407: histone deacetylase activity2.64E-02
117GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.66E-02
118GO:0051287: NAD binding2.68E-02
119GO:0043424: protein histidine kinase binding2.83E-02
120GO:0015079: potassium ion transmembrane transporter activity2.83E-02
121GO:0008324: cation transmembrane transporter activity2.83E-02
122GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.98E-02
123GO:0008168: methyltransferase activity3.05E-02
124GO:0008289: lipid binding3.42E-02
125GO:0030570: pectate lyase activity3.44E-02
126GO:0008810: cellulase activity3.44E-02
127GO:0016491: oxidoreductase activity3.49E-02
128GO:0004812: aminoacyl-tRNA ligase activity3.86E-02
129GO:0047134: protein-disulfide reductase activity3.86E-02
130GO:0030599: pectinesterase activity3.99E-02
131GO:0008080: N-acetyltransferase activity4.31E-02
132GO:0003729: mRNA binding4.36E-02
133GO:0052689: carboxylic ester hydrolase activity4.71E-02
134GO:0048038: quinone binding5.00E-02
135GO:0016762: xyloglucan:xyloglucosyl transferase activity5.00E-02
RankGO TermAdjusted P value
1GO:0009571: proplastid stroma0.00E+00
2GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
3GO:0009575: chromoplast stroma0.00E+00
4GO:0044391: ribosomal subunit0.00E+00
5GO:0009507: chloroplast9.49E-102
6GO:0009570: chloroplast stroma6.66E-59
7GO:0009941: chloroplast envelope1.35E-50
8GO:0009535: chloroplast thylakoid membrane2.77E-46
9GO:0009579: thylakoid6.38E-31
10GO:0009543: chloroplast thylakoid lumen2.33E-25
11GO:0031977: thylakoid lumen2.44E-19
12GO:0009534: chloroplast thylakoid5.40E-18
13GO:0005840: ribosome1.49E-17
14GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.46E-08
15GO:0031969: chloroplast membrane4.02E-07
16GO:0009654: photosystem II oxygen evolving complex7.34E-07
17GO:0019898: extrinsic component of membrane5.56E-06
18GO:0009523: photosystem II5.56E-06
19GO:0030095: chloroplast photosystem II8.61E-06
20GO:0010319: stromule1.28E-05
21GO:0042651: thylakoid membrane2.19E-05
22GO:0048046: apoplast3.62E-05
23GO:0000311: plastid large ribosomal subunit1.29E-04
24GO:0009547: plastid ribosome4.84E-04
25GO:0043190: ATP-binding cassette (ABC) transporter complex4.84E-04
26GO:0009782: photosystem I antenna complex4.84E-04
27GO:0009515: granal stacked thylakoid4.84E-04
28GO:0009533: chloroplast stromal thylakoid4.90E-04
29GO:0010287: plastoglobule5.03E-04
30GO:0009536: plastid5.55E-04
31GO:0030529: intracellular ribonucleoprotein complex1.52E-03
32GO:0046658: anchored component of plasma membrane1.60E-03
33GO:0016020: membrane2.07E-03
34GO:0030076: light-harvesting complex2.32E-03
35GO:0005960: glycine cleavage complex2.47E-03
36GO:0015934: large ribosomal subunit2.57E-03
37GO:0015935: small ribosomal subunit3.49E-03
38GO:0009512: cytochrome b6f complex4.26E-03
39GO:0005778: peroxisomal membrane9.16E-03
40GO:0005811: lipid particle1.01E-02
41GO:0005874: microtubule1.11E-02
42GO:0005763: mitochondrial small ribosomal subunit1.14E-02
43GO:0045298: tubulin complex1.14E-02
44GO:0031225: anchored component of membrane1.27E-02
45GO:0032040: small-subunit processome1.75E-02
46GO:0009532: plastid stroma3.03E-02
47GO:0005744: mitochondrial inner membrane presequence translocase complex3.65E-02
48GO:0005871: kinesin complex3.86E-02
49GO:0009706: chloroplast inner membrane4.24E-02
50GO:0022625: cytosolic large ribosomal subunit4.44E-02
51GO:0009522: photosystem I4.54E-02
52GO:0022626: cytosolic ribosome4.56E-02
Gene type



Gene DE type