co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G35260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002191: cap-dependent translational initiation	0.00E+00
2	GO:0010398: xylogalacturonan metabolic process	0.00E+00
3	GO:0071816: tail-anchored membrane protein insertion into ER membrane	0.00E+00
4	GO:0000162: tryptophan biosynthetic process	1.19E-07
5	GO:0010107: potassium ion import	9.95E-06
6	GO:0042273: ribosomal large subunit biogenesis	9.95E-06
7	GO:0090333: regulation of stomatal closure	9.74E-05
8	GO:0032469: endoplasmic reticulum calcium ion homeostasis	1.06E-04
9	GO:0080120: CAAX-box protein maturation	1.06E-04
10	GO:0071586: CAAX-box protein processing	1.06E-04
11	GO:0019673: GDP-mannose metabolic process	1.06E-04
12	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	2.48E-04
13	GO:0034398: telomere tethering at nuclear periphery	2.48E-04
14	GO:0007584: response to nutrient	2.48E-04
15	GO:0080147: root hair cell development	3.49E-04
16	GO:1902626: assembly of large subunit precursor of preribosome	4.12E-04
17	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	4.12E-04
18	GO:0042256: mature ribosome assembly	4.12E-04
19	GO:0000973: posttranscriptional tethering of RNA polymerase II gene DNA at nuclear periphery	5.92E-04
20	GO:0000460: maturation of 5.8S rRNA	7.86E-04
21	GO:0033320: UDP-D-xylose biosynthetic process	7.86E-04
22	GO:0010600: regulation of auxin biosynthetic process	7.86E-04
23	GO:0009851: auxin biosynthetic process	7.87E-04
24	GO:0007029: endoplasmic reticulum organization	9.92E-04
25	GO:1900425: negative regulation of defense response to bacterium	1.21E-03
26	GO:0006014: D-ribose metabolic process	1.21E-03
27	GO:0001731: formation of translation preinitiation complex	1.21E-03
28	GO:0000470: maturation of LSU-rRNA	1.21E-03
29	GO:0042732: D-xylose metabolic process	1.21E-03
30	GO:0000054: ribosomal subunit export from nucleus	1.45E-03
31	GO:0048767: root hair elongation	1.62E-03
32	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.97E-03
33	GO:0006491: N-glycan processing	1.97E-03
34	GO:0034765: regulation of ion transmembrane transport	2.53E-03
35	GO:0046777: protein autophosphorylation	2.86E-03
36	GO:0007064: mitotic sister chromatid cohesion	3.15E-03
37	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.15E-03
38	GO:0006813: potassium ion transport	3.35E-03
39	GO:0030148: sphingolipid biosynthetic process	3.47E-03
40	GO:0052544: defense response by callose deposition in cell wall	3.47E-03
41	GO:0000266: mitochondrial fission	3.81E-03
42	GO:0045037: protein import into chloroplast stroma	3.81E-03
43	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	4.16E-03
44	GO:0006446: regulation of translational initiation	4.52E-03
45	GO:0009969: xyloglucan biosynthetic process	4.88E-03
46	GO:0009225: nucleotide-sugar metabolic process	4.88E-03
47	GO:0006468: protein phosphorylation	5.36E-03
48	GO:0006406: mRNA export from nucleus	5.65E-03
49	GO:0016226: iron-sulfur cluster assembly	6.87E-03
50	GO:0006012: galactose metabolic process	7.30E-03
51	GO:0071215: cellular response to abscisic acid stimulus	7.30E-03
52	GO:0006413: translational initiation	7.64E-03
53	GO:0051028: mRNA transport	8.19E-03
54	GO:0008284: positive regulation of cell proliferation	8.19E-03
55	GO:0000413: protein peptidyl-prolyl isomerization	8.64E-03
56	GO:0010118: stomatal movement	8.64E-03
57	GO:0006606: protein import into nucleus	8.64E-03
58	GO:0042631: cellular response to water deprivation	8.64E-03
59	GO:0042391: regulation of membrane potential	8.64E-03
60	GO:0006885: regulation of pH	9.10E-03
61	GO:0045489: pectin biosynthetic process	9.10E-03
62	GO:0071472: cellular response to salt stress	9.10E-03
63	GO:0048544: recognition of pollen	9.58E-03
64	GO:0009617: response to bacterium	9.79E-03
65	GO:0019252: starch biosynthetic process	1.01E-02
66	GO:0000302: response to reactive oxygen species	1.06E-02
67	GO:0002229: defense response to oomycetes	1.06E-02
68	GO:0010193: response to ozone	1.06E-02
69	GO:0010583: response to cyclopentenone	1.11E-02
70	GO:0032502: developmental process	1.11E-02
71	GO:0009630: gravitropism	1.11E-02
72	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.63E-02
73	GO:0010311: lateral root formation	1.71E-02
74	GO:0010043: response to zinc ion	1.83E-02
75	GO:0009910: negative regulation of flower development	1.83E-02
76	GO:0006099: tricarboxylic acid cycle	2.02E-02
77	GO:0016310: phosphorylation	2.05E-02
78	GO:0000209: protein polyubiquitination	2.41E-02
79	GO:0006397: mRNA processing	2.43E-02
80	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.68E-02
81	GO:0006812: cation transport	2.75E-02
82	GO:0006508: proteolysis	2.85E-02
83	GO:0006364: rRNA processing	2.89E-02
84	GO:0006486: protein glycosylation	2.89E-02
85	GO:0046686: response to cadmium ion	3.78E-02
86	GO:0009735: response to cytokinin	3.78E-02
87	GO:0018105: peptidyl-serine phosphorylation	3.80E-02
88	GO:0009742: brassinosteroid mediated signaling pathway	3.88E-02
89	GO:0035556: intracellular signal transduction	4.35E-02

Rank	GO Term	Adjusted P value
1	GO:0098808: mRNA cap binding	0.00E+00
2	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
3	GO:0004834: tryptophan synthase activity	9.95E-06
4	GO:0000386: second spliceosomal transesterification activity	1.06E-04
5	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.06E-04
6	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.06E-04
7	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.06E-04
8	GO:0008446: GDP-mannose 4,6-dehydratase activity	1.06E-04
9	GO:0016301: kinase activity	1.97E-04
10	GO:0045140: inositol phosphoceramide synthase activity	2.48E-04
11	GO:0005524: ATP binding	2.72E-04
12	GO:0004049: anthranilate synthase activity	4.12E-04
13	GO:0004324: ferredoxin-NADP+ reductase activity	4.12E-04
14	GO:0016656: monodehydroascorbate reductase (NADH) activity	5.92E-04
15	GO:0043023: ribosomal large subunit binding	5.92E-04
16	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	5.92E-04
17	GO:0035252: UDP-xylosyltransferase activity	1.21E-03
18	GO:0048040: UDP-glucuronate decarboxylase activity	1.21E-03
19	GO:0004656: procollagen-proline 4-dioxygenase activity	1.45E-03
20	GO:0004559: alpha-mannosidase activity	1.45E-03
21	GO:0005242: inward rectifier potassium channel activity	1.45E-03
22	GO:0070403: NAD+ binding	1.45E-03
23	GO:0004747: ribokinase activity	1.45E-03
24	GO:0008143: poly(A) binding	1.70E-03
25	GO:0043022: ribosome binding	1.97E-03
26	GO:0017056: structural constituent of nuclear pore	1.97E-03
27	GO:0015288: porin activity	1.97E-03
28	GO:0004034: aldose 1-epimerase activity	1.97E-03
29	GO:0008865: fructokinase activity	1.97E-03
30	GO:0004674: protein serine/threonine kinase activity	2.01E-03
31	GO:0005267: potassium channel activity	2.24E-03
32	GO:0030246: carbohydrate binding	2.84E-03
33	GO:0045309: protein phosphorylated amino acid binding	2.84E-03
34	GO:0005487: nucleocytoplasmic transporter activity	2.84E-03
35	GO:0004713: protein tyrosine kinase activity	3.15E-03
36	GO:0019904: protein domain specific binding	3.47E-03
37	GO:0008139: nuclear localization sequence binding	4.16E-03
38	GO:0005262: calcium channel activity	4.16E-03
39	GO:0031624: ubiquitin conjugating enzyme binding	4.52E-03
40	GO:0004175: endopeptidase activity	4.52E-03
41	GO:0051536: iron-sulfur cluster binding	5.65E-03
42	GO:0031418: L-ascorbic acid binding	5.65E-03
43	GO:0003727: single-stranded RNA binding	7.74E-03
44	GO:0005451: monovalent cation:proton antiporter activity	8.64E-03
45	GO:0030551: cyclic nucleotide binding	8.64E-03
46	GO:0001085: RNA polymerase II transcription factor binding	9.10E-03
47	GO:0016853: isomerase activity	9.58E-03
48	GO:0015299: solute:proton antiporter activity	9.58E-03
49	GO:0003743: translation initiation factor activity	9.58E-03
50	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.04E-02
51	GO:0015385: sodium:proton antiporter activity	1.16E-02
52	GO:0016791: phosphatase activity	1.21E-02
53	GO:0003682: chromatin binding	1.34E-02
54	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.48E-02
55	GO:0004721: phosphoprotein phosphatase activity	1.54E-02
56	GO:0004683: calmodulin-dependent protein kinase activity	1.54E-02
57	GO:0008233: peptidase activity	1.55E-02
58	GO:0008236: serine-type peptidase activity	1.59E-02
59	GO:0004222: metalloendopeptidase activity	1.77E-02
60	GO:0030145: manganese ion binding	1.83E-02
61	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.83E-02
62	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.95E-02
63	GO:0008422: beta-glucosidase activity	2.08E-02
64	GO:0051539: 4 iron, 4 sulfur cluster binding	2.14E-02
65	GO:0003924: GTPase activity	2.33E-02
66	GO:0043621: protein self-association	2.47E-02
67	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.61E-02
68	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.89E-02
69	GO:0015171: amino acid transmembrane transporter activity	3.11E-02
70	GO:0045735: nutrient reservoir activity	3.26E-02
71	GO:0004672: protein kinase activity	3.52E-02
72	GO:0003729: mRNA binding	3.58E-02
73	GO:0016887: ATPase activity	3.61E-02
74	GO:0016746: transferase activity, transferring acyl groups	3.80E-02
75	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.78E-02
76	GO:0015144: carbohydrate transmembrane transporter activity	4.95E-02
77	GO:0008565: protein transporter activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0030687: preribosome, large subunit precursor	3.91E-07
2	GO:0005829: cytosol	4.64E-05
3	GO:0045252: oxoglutarate dehydrogenase complex	1.06E-04
4	GO:0005950: anthranilate synthase complex	2.48E-04
5	GO:0030176: integral component of endoplasmic reticulum membrane	2.81E-04
6	GO:0005886: plasma membrane	3.58E-04
7	GO:0044614: nuclear pore cytoplasmic filaments	4.12E-04
8	GO:0005794: Golgi apparatus	7.20E-04
9	GO:0005802: trans-Golgi network	8.20E-04
10	GO:0016021: integral component of membrane	9.05E-04
11	GO:0016282: eukaryotic 43S preinitiation complex	1.21E-03
12	GO:0033290: eukaryotic 48S preinitiation complex	1.45E-03
13	GO:0016020: membrane	1.47E-03
14	GO:0034399: nuclear periphery	1.97E-03
15	GO:0000139: Golgi membrane	2.09E-03
16	GO:0010494: cytoplasmic stress granule	2.53E-03
17	GO:0005789: endoplasmic reticulum membrane	2.58E-03
18	GO:0005783: endoplasmic reticulum	4.30E-03
19	GO:0005768: endosome	4.51E-03
20	GO:0031965: nuclear membrane	1.01E-02
21	GO:0005774: vacuolar membrane	1.08E-02
22	GO:0009570: chloroplast stroma	1.12E-02
23	GO:0032580: Golgi cisterna membrane	1.21E-02
24	GO:0005667: transcription factor complex	1.48E-02
25	GO:0000151: ubiquitin ligase complex	1.65E-02
26	GO:0031902: late endosome membrane	2.21E-02
27	GO:0009536: plastid	2.81E-02
28	GO:0005635: nuclear envelope	3.04E-02
29	GO:0005681: spliceosomal complex	3.26E-02
30	GO:0005747: mitochondrial respiratory chain complex I	3.33E-02
31	GO:0009706: chloroplast inner membrane	3.72E-02
32	GO:0009506: plasmodesma	4.18E-02
33	GO:0005623: cell	4.45E-02
34	GO:0009524: phragmoplast	4.53E-02