Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G35250

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
3GO:1901918: negative regulation of exoribonuclease activity0.00E+00
4GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
5GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.77E-05
6GO:0046467: membrane lipid biosynthetic process8.61E-05
7GO:0010205: photoinhibition8.63E-05
8GO:0009773: photosynthetic electron transport in photosystem I1.22E-04
9GO:0010588: cotyledon vascular tissue pattern formation1.63E-04
10GO:0035304: regulation of protein dephosphorylation2.04E-04
11GO:0080022: primary root development4.86E-04
12GO:0010087: phloem or xylem histogenesis4.86E-04
13GO:0051639: actin filament network formation4.92E-04
14GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity4.92E-04
15GO:0010305: leaf vascular tissue pattern formation5.23E-04
16GO:0048825: cotyledon development6.01E-04
17GO:0051764: actin crosslink formation6.55E-04
18GO:0009913: epidermal cell differentiation1.01E-03
19GO:0010304: PSII associated light-harvesting complex II catabolic process1.01E-03
20GO:0042549: photosystem II stabilization1.01E-03
21GO:0009228: thiamine biosynthetic process1.01E-03
22GO:0015995: chlorophyll biosynthetic process1.07E-03
23GO:1900057: positive regulation of leaf senescence1.41E-03
24GO:0010444: guard mother cell differentiation1.41E-03
25GO:0034599: cellular response to oxidative stress1.54E-03
26GO:0010078: maintenance of root meristem identity1.63E-03
27GO:0043562: cellular response to nitrogen levels1.86E-03
28GO:0009932: cell tip growth1.86E-03
29GO:0015996: chlorophyll catabolic process1.86E-03
30GO:0009657: plastid organization1.86E-03
31GO:0010206: photosystem II repair2.10E-03
32GO:0009245: lipid A biosynthetic process2.10E-03
33GO:0009638: phototropism2.35E-03
34GO:0019684: photosynthesis, light reaction2.87E-03
35GO:1903507: negative regulation of nucleic acid-templated transcription2.87E-03
36GO:0009684: indoleacetic acid biosynthetic process2.87E-03
37GO:0046856: phosphatidylinositol dephosphorylation2.87E-03
38GO:0048367: shoot system development3.09E-03
39GO:0010628: positive regulation of gene expression3.43E-03
40GO:0050826: response to freezing3.43E-03
41GO:0006094: gluconeogenesis3.43E-03
42GO:0009785: blue light signaling pathway3.43E-03
43GO:0010207: photosystem II assembly3.73E-03
44GO:0048467: gynoecium development3.73E-03
45GO:0071732: cellular response to nitric oxide4.03E-03
46GO:0010030: positive regulation of seed germination4.03E-03
47GO:0010053: root epidermal cell differentiation4.03E-03
48GO:0006636: unsaturated fatty acid biosynthetic process4.34E-03
49GO:0051017: actin filament bundle assembly4.65E-03
50GO:2000377: regulation of reactive oxygen species metabolic process4.65E-03
51GO:0008299: isoprenoid biosynthetic process4.98E-03
52GO:0016114: terpenoid biosynthetic process5.32E-03
53GO:0048511: rhythmic process5.32E-03
54GO:0006633: fatty acid biosynthetic process5.63E-03
55GO:2000022: regulation of jasmonic acid mediated signaling pathway5.66E-03
56GO:0071369: cellular response to ethylene stimulus6.01E-03
57GO:0009416: response to light stimulus6.22E-03
58GO:0009789: positive regulation of abscisic acid-activated signaling pathway6.73E-03
59GO:0007166: cell surface receptor signaling pathway7.07E-03
60GO:0000271: polysaccharide biosynthetic process7.10E-03
61GO:0042631: cellular response to water deprivation7.10E-03
62GO:0042335: cuticle development7.10E-03
63GO:0009958: positive gravitropism7.48E-03
64GO:0045489: pectin biosynthetic process7.48E-03
65GO:0071472: cellular response to salt stress7.48E-03
66GO:0042752: regulation of circadian rhythm7.87E-03
67GO:0009851: auxin biosynthetic process8.26E-03
68GO:0000302: response to reactive oxygen species8.66E-03
69GO:0016032: viral process9.07E-03
70GO:0071281: cellular response to iron ion9.48E-03
71GO:0071805: potassium ion transmembrane transport1.03E-02
72GO:0009627: systemic acquired resistance1.21E-02
73GO:0048527: lateral root development1.50E-02
74GO:0007568: aging1.50E-02
75GO:0016051: carbohydrate biosynthetic process1.60E-02
76GO:0016042: lipid catabolic process1.71E-02
77GO:0010114: response to red light1.92E-02
78GO:0031347: regulation of defense response2.19E-02
79GO:0009664: plant-type cell wall organization2.25E-02
80GO:0006364: rRNA processing2.37E-02
81GO:0006813: potassium ion transport2.37E-02
82GO:0006857: oligopeptide transport2.49E-02
83GO:0006417: regulation of translation2.55E-02
84GO:0005975: carbohydrate metabolic process2.58E-02
85GO:0006096: glycolytic process2.67E-02
86GO:0006396: RNA processing3.11E-02
87GO:0009845: seed germination3.78E-02
88GO:0007165: signal transduction3.81E-02
89GO:0042744: hydrogen peroxide catabolic process3.92E-02
90GO:0055085: transmembrane transport3.95E-02
91GO:0007623: circadian rhythm4.49E-02
RankGO TermAdjusted P value
1GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
2GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
3GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
4GO:0034256: chlorophyll(ide) b reductase activity8.61E-05
5GO:0010242: oxygen evolving activity8.61E-05
6GO:0045485: omega-6 fatty acid desaturase activity8.61E-05
7GO:0080097: L-tryptophan:pyruvate aminotransferase activity2.04E-04
8GO:0016868: intramolecular transferase activity, phosphotransferases2.04E-04
9GO:0005094: Rho GDP-dissociation inhibitor activity2.04E-04
10GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity2.04E-04
11GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity2.04E-04
12GO:0070402: NADPH binding3.42E-04
13GO:0016846: carbon-sulfur lyase activity8.29E-04
14GO:0031177: phosphopantetheine binding1.01E-03
15GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity1.01E-03
16GO:0004332: fructose-bisphosphate aldolase activity1.01E-03
17GO:0004629: phospholipase C activity1.01E-03
18GO:0004130: cytochrome-c peroxidase activity1.01E-03
19GO:0035673: oligopeptide transmembrane transporter activity1.01E-03
20GO:0042578: phosphoric ester hydrolase activity1.01E-03
21GO:0000035: acyl binding1.20E-03
22GO:0004435: phosphatidylinositol phospholipase C activity1.20E-03
23GO:0005096: GTPase activator activity1.23E-03
24GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.63E-03
25GO:0004871: signal transducer activity2.45E-03
26GO:0016787: hydrolase activity2.83E-03
27GO:0047372: acylglycerol lipase activity2.87E-03
28GO:0008794: arsenate reductase (glutaredoxin) activity2.87E-03
29GO:0015198: oligopeptide transporter activity3.15E-03
30GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity3.15E-03
31GO:0031072: heat shock protein binding3.43E-03
32GO:0008266: poly(U) RNA binding3.73E-03
33GO:0008289: lipid binding4.57E-03
34GO:0003714: transcription corepressor activity4.65E-03
35GO:0015079: potassium ion transmembrane transporter activity4.98E-03
36GO:0016491: oxidoreductase activity5.21E-03
37GO:0004176: ATP-dependent peptidase activity5.32E-03
38GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity5.66E-03
39GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.76E-03
40GO:0003756: protein disulfide isomerase activity6.36E-03
41GO:0003727: single-stranded RNA binding6.36E-03
42GO:0042626: ATPase activity, coupled to transmembrane movement of substances7.85E-03
43GO:0016853: isomerase activity7.87E-03
44GO:0051015: actin filament binding9.48E-03
45GO:0008483: transaminase activity1.03E-02
46GO:0016597: amino acid binding1.08E-02
47GO:0030145: manganese ion binding1.50E-02
48GO:0003746: translation elongation factor activity1.60E-02
49GO:0009055: electron carrier activity1.89E-02
50GO:0051537: 2 iron, 2 sulfur cluster binding2.02E-02
51GO:0043621: protein self-association2.02E-02
52GO:0005515: protein binding2.75E-02
53GO:0003779: actin binding2.98E-02
54GO:0051082: unfolded protein binding3.04E-02
55GO:0015035: protein disulfide oxidoreductase activity3.11E-02
56GO:0016758: transferase activity, transferring hexosyl groups3.50E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast3.97E-13
2GO:0009941: chloroplast envelope1.19E-09
3GO:0009570: chloroplast stroma8.95E-08
4GO:0009535: chloroplast thylakoid membrane3.55E-07
5GO:0009534: chloroplast thylakoid3.55E-06
6GO:0031977: thylakoid lumen1.53E-04
7GO:0030093: chloroplast photosystem I2.04E-04
8GO:0009579: thylakoid2.89E-04
9GO:0009531: secondary cell wall4.92E-04
10GO:0032432: actin filament bundle4.92E-04
11GO:0010287: plastoglobule5.13E-04
12GO:0009543: chloroplast thylakoid lumen5.49E-04
13GO:0031969: chloroplast membrane1.84E-03
14GO:0008180: COP9 signalosome2.10E-03
15GO:0005884: actin filament2.87E-03
16GO:0009508: plastid chromosome3.43E-03
17GO:0016602: CCAAT-binding factor complex3.43E-03
18GO:0009706: chloroplast inner membrane3.59E-03
19GO:0030095: chloroplast photosystem II3.73E-03
20GO:0009654: photosystem II oxygen evolving complex4.98E-03
21GO:0019898: extrinsic component of membrane8.26E-03
22GO:0009295: nucleoid1.03E-02
23GO:0019005: SCF ubiquitin ligase complex1.35E-02
24GO:0000502: proteasome complex2.37E-02
Gene type



Gene DE type