Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G34610

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
2GO:0045740: positive regulation of DNA replication0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0007638: mechanosensory behavior0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:1905499: trichome papilla formation0.00E+00
9GO:0015979: photosynthesis2.09E-06
10GO:0045454: cell redox homeostasis2.95E-05
11GO:0032544: plastid translation1.47E-04
12GO:0051180: vitamin transport1.60E-04
13GO:0009443: pyridoxal 5'-phosphate salvage1.60E-04
14GO:0030974: thiamine pyrophosphate transport1.60E-04
15GO:0071277: cellular response to calcium ion1.60E-04
16GO:0010442: guard cell morphogenesis1.60E-04
17GO:0009735: response to cytokinin1.63E-04
18GO:0010027: thylakoid membrane organization1.94E-04
19GO:0071555: cell wall organization2.04E-04
20GO:0018298: protein-chromophore linkage2.79E-04
21GO:0009773: photosynthetic electron transport in photosystem I2.97E-04
22GO:0043085: positive regulation of catalytic activity2.97E-04
23GO:0055114: oxidation-reduction process3.09E-04
24GO:0030388: fructose 1,6-bisphosphate metabolic process3.65E-04
25GO:0043039: tRNA aminoacylation3.65E-04
26GO:0052541: plant-type cell wall cellulose metabolic process3.65E-04
27GO:0015893: drug transport3.65E-04
28GO:0019253: reductive pentose-phosphate cycle4.38E-04
29GO:0090506: axillary shoot meristem initiation5.97E-04
30GO:0006000: fructose metabolic process5.97E-04
31GO:0010581: regulation of starch biosynthetic process5.97E-04
32GO:0071492: cellular response to UV-A5.97E-04
33GO:0006696: ergosterol biosynthetic process5.97E-04
34GO:0006418: tRNA aminoacylation for protein translation6.66E-04
35GO:0009768: photosynthesis, light harvesting in photosystem I6.66E-04
36GO:0009658: chloroplast organization7.28E-04
37GO:0051513: regulation of monopolar cell growth8.53E-04
38GO:0007231: osmosensory signaling pathway8.53E-04
39GO:0016117: carotenoid biosynthetic process1.01E-03
40GO:0015976: carbon utilization1.13E-03
41GO:0071486: cellular response to high light intensity1.13E-03
42GO:0009765: photosynthesis, light harvesting1.13E-03
43GO:2000122: negative regulation of stomatal complex development1.13E-03
44GO:0033500: carbohydrate homeostasis1.13E-03
45GO:0031122: cytoplasmic microtubule organization1.13E-03
46GO:0042991: transcription factor import into nucleus1.13E-03
47GO:0010037: response to carbon dioxide1.13E-03
48GO:0006461: protein complex assembly1.43E-03
49GO:0016123: xanthophyll biosynthetic process1.43E-03
50GO:0006665: sphingolipid metabolic process1.43E-03
51GO:0048359: mucilage metabolic process involved in seed coat development1.43E-03
52GO:0016120: carotene biosynthetic process1.43E-03
53GO:0006564: L-serine biosynthetic process1.43E-03
54GO:0010236: plastoquinone biosynthetic process1.43E-03
55GO:0010405: arabinogalactan protein metabolic process1.76E-03
56GO:0010304: PSII associated light-harvesting complex II catabolic process1.76E-03
57GO:0042549: photosystem II stabilization1.76E-03
58GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.76E-03
59GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity1.76E-03
60GO:0010190: cytochrome b6f complex assembly1.76E-03
61GO:0018258: protein O-linked glycosylation via hydroxyproline1.76E-03
62GO:0010067: procambium histogenesis2.11E-03
63GO:0010189: vitamin E biosynthetic process2.11E-03
64GO:0045490: pectin catabolic process2.37E-03
65GO:0010411: xyloglucan metabolic process2.43E-03
66GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway2.48E-03
67GO:0009395: phospholipid catabolic process2.48E-03
68GO:0007050: cell cycle arrest2.48E-03
69GO:0009645: response to low light intensity stimulus2.48E-03
70GO:0000082: G1/S transition of mitotic cell cycle2.48E-03
71GO:0006400: tRNA modification2.48E-03
72GO:0007155: cell adhesion2.88E-03
73GO:0048564: photosystem I assembly2.88E-03
74GO:0030091: protein repair2.88E-03
75GO:0009704: de-etiolation2.88E-03
76GO:0006002: fructose 6-phosphate metabolic process3.29E-03
77GO:0007186: G-protein coupled receptor signaling pathway3.29E-03
78GO:0019430: removal of superoxide radicals3.29E-03
79GO:0010233: phloem transport3.29E-03
80GO:0009657: plastid organization3.29E-03
81GO:0010206: photosystem II repair3.72E-03
82GO:0090333: regulation of stomatal closure3.72E-03
83GO:0006754: ATP biosynthetic process3.72E-03
84GO:0048589: developmental growth3.72E-03
85GO:0006839: mitochondrial transport3.86E-03
86GO:0010205: photoinhibition4.17E-03
87GO:0042761: very long-chain fatty acid biosynthetic process4.17E-03
88GO:0010380: regulation of chlorophyll biosynthetic process4.17E-03
89GO:0010192: mucilage biosynthetic process4.64E-03
90GO:0019538: protein metabolic process4.64E-03
91GO:0009644: response to high light intensity4.72E-03
92GO:0006816: calcium ion transport5.12E-03
93GO:0009073: aromatic amino acid family biosynthetic process5.12E-03
94GO:0006415: translational termination5.12E-03
95GO:0018119: peptidyl-cysteine S-nitrosylation5.12E-03
96GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.64E-03
97GO:0009736: cytokinin-activated signaling pathway5.88E-03
98GO:0006094: gluconeogenesis6.14E-03
99GO:0005986: sucrose biosynthetic process6.14E-03
100GO:0010102: lateral root morphogenesis6.14E-03
101GO:0010020: chloroplast fission6.67E-03
102GO:0010207: photosystem II assembly6.67E-03
103GO:0010223: secondary shoot formation6.67E-03
104GO:0048367: shoot system development7.18E-03
105GO:0009969: xyloglucan biosynthetic process7.22E-03
106GO:0005985: sucrose metabolic process7.22E-03
107GO:0070588: calcium ion transmembrane transport7.22E-03
108GO:0006071: glycerol metabolic process7.79E-03
109GO:0019762: glucosinolate catabolic process7.79E-03
110GO:0010025: wax biosynthetic process7.79E-03
111GO:0007010: cytoskeleton organization8.38E-03
112GO:0006874: cellular calcium ion homeostasis8.97E-03
113GO:0010026: trichome differentiation8.97E-03
114GO:0009695: jasmonic acid biosynthetic process8.97E-03
115GO:0048364: root development9.36E-03
116GO:0031408: oxylipin biosynthetic process9.59E-03
117GO:0016998: cell wall macromolecule catabolic process9.59E-03
118GO:0008152: metabolic process1.00E-02
119GO:0080092: regulation of pollen tube growth1.02E-02
120GO:0009294: DNA mediated transformation1.09E-02
121GO:0001944: vasculature development1.09E-02
122GO:0010089: xylem development1.15E-02
123GO:0010091: trichome branching1.15E-02
124GO:0019722: calcium-mediated signaling1.15E-02
125GO:0042744: hydrogen peroxide catabolic process1.20E-02
126GO:0042742: defense response to bacterium1.26E-02
127GO:0042335: cuticle development1.29E-02
128GO:0000271: polysaccharide biosynthetic process1.29E-02
129GO:0010051: xylem and phloem pattern formation1.29E-02
130GO:0010087: phloem or xylem histogenesis1.29E-02
131GO:0045489: pectin biosynthetic process1.36E-02
132GO:0010305: leaf vascular tissue pattern formation1.36E-02
133GO:0006662: glycerol ether metabolic process1.36E-02
134GO:0006814: sodium ion transport1.43E-02
135GO:0048825: cotyledon development1.50E-02
136GO:1901657: glycosyl compound metabolic process1.73E-02
137GO:0030163: protein catabolic process1.73E-02
138GO:0009416: response to light stimulus1.84E-02
139GO:0007267: cell-cell signaling1.89E-02
140GO:0009409: response to cold1.98E-02
141GO:0042128: nitrate assimilation2.22E-02
142GO:0006810: transport2.23E-02
143GO:0005975: carbohydrate metabolic process2.35E-02
144GO:0009817: defense response to fungus, incompatible interaction2.47E-02
145GO:0048481: plant ovule development2.47E-02
146GO:0048767: root hair elongation2.56E-02
147GO:0000160: phosphorelay signal transduction system2.56E-02
148GO:0010311: lateral root formation2.56E-02
149GO:0009407: toxin catabolic process2.65E-02
150GO:0006811: ion transport2.65E-02
151GO:0010218: response to far red light2.65E-02
152GO:0048527: lateral root development2.74E-02
153GO:0010119: regulation of stomatal movement2.74E-02
154GO:0009637: response to blue light2.93E-02
155GO:0016051: carbohydrate biosynthetic process2.93E-02
156GO:0046777: protein autophosphorylation2.98E-02
157GO:0034599: cellular response to oxidative stress3.02E-02
158GO:0030001: metal ion transport3.21E-02
159GO:0006631: fatty acid metabolic process3.31E-02
160GO:0051707: response to other organism3.51E-02
161GO:0010114: response to red light3.51E-02
162GO:0042546: cell wall biogenesis3.61E-02
163GO:0008643: carbohydrate transport3.71E-02
164GO:0009636: response to toxic substance3.81E-02
165GO:0006629: lipid metabolic process4.11E-02
166GO:0009809: lignin biosynthetic process4.34E-02
167GO:0006364: rRNA processing4.34E-02
168GO:0006096: glycolytic process4.88E-02
RankGO TermAdjusted P value
1GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
2GO:0047259: glucomannan 4-beta-mannosyltransferase activity0.00E+00
3GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
4GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
5GO:0045435: lycopene epsilon cyclase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0004822: isoleucine-tRNA ligase activity0.00E+00
8GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity0.00E+00
9GO:0046905: phytoene synthase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0051920: peroxiredoxin activity6.62E-07
12GO:0016209: antioxidant activity1.66E-06
13GO:0051753: mannan synthase activity6.84E-05
14GO:0004033: aldo-keto reductase (NADP) activity1.18E-04
15GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity1.60E-04
16GO:0004560: alpha-L-fucosidase activity1.60E-04
17GO:0090422: thiamine pyrophosphate transporter activity1.60E-04
18GO:0004831: tyrosine-tRNA ligase activity1.60E-04
19GO:0008568: microtubule-severing ATPase activity1.60E-04
20GO:0004321: fatty-acyl-CoA synthase activity1.60E-04
21GO:0051996: squalene synthase activity1.60E-04
22GO:0016168: chlorophyll binding2.10E-04
23GO:0008047: enzyme activator activity2.55E-04
24GO:0004618: phosphoglycerate kinase activity3.65E-04
25GO:0004617: phosphoglycerate dehydrogenase activity3.65E-04
26GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity3.65E-04
27GO:0004310: farnesyl-diphosphate farnesyltransferase activity3.65E-04
28GO:0031409: pigment binding5.47E-04
29GO:0070330: aromatase activity5.97E-04
30GO:0003913: DNA photolyase activity5.97E-04
31GO:0002161: aminoacyl-tRNA editing activity5.97E-04
32GO:0004148: dihydrolipoyl dehydrogenase activity5.97E-04
33GO:0070402: NADPH binding5.97E-04
34GO:0004601: peroxidase activity7.28E-04
35GO:0008508: bile acid:sodium symporter activity8.53E-04
36GO:0016149: translation release factor activity, codon specific8.53E-04
37GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity8.53E-04
38GO:0030570: pectate lyase activity8.67E-04
39GO:0004812: aminoacyl-tRNA ligase activity1.01E-03
40GO:0004930: G-protein coupled receptor activity1.13E-03
41GO:0004659: prenyltransferase activity1.13E-03
42GO:0004791: thioredoxin-disulfide reductase activity1.26E-03
43GO:0046872: metal ion binding1.41E-03
44GO:0009922: fatty acid elongase activity1.43E-03
45GO:0016773: phosphotransferase activity, alcohol group as acceptor1.43E-03
46GO:0018685: alkane 1-monooxygenase activity1.43E-03
47GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.63E-03
48GO:1990714: hydroxyproline O-galactosyltransferase activity1.76E-03
49GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity1.76E-03
50GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.11E-03
51GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.11E-03
52GO:0009881: photoreceptor activity2.48E-03
53GO:0052747: sinapyl alcohol dehydrogenase activity2.88E-03
54GO:0003747: translation release factor activity3.72E-03
55GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors3.72E-03
56GO:0016207: 4-coumarate-CoA ligase activity3.72E-03
57GO:0008889: glycerophosphodiester phosphodiesterase activity3.72E-03
58GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism3.72E-03
59GO:0016788: hydrolase activity, acting on ester bonds4.21E-03
60GO:0030234: enzyme regulator activity4.64E-03
61GO:0047372: acylglycerol lipase activity5.12E-03
62GO:0005089: Rho guanyl-nucleotide exchange factor activity5.12E-03
63GO:0008378: galactosyltransferase activity5.62E-03
64GO:0000049: tRNA binding5.62E-03
65GO:0045551: cinnamyl-alcohol dehydrogenase activity5.62E-03
66GO:0004089: carbonate dehydratase activity6.14E-03
67GO:0005262: calcium channel activity6.14E-03
68GO:0004565: beta-galactosidase activity6.14E-03
69GO:0005217: intracellular ligand-gated ion channel activity7.22E-03
70GO:0004970: ionotropic glutamate receptor activity7.22E-03
71GO:0030599: pectinesterase activity7.88E-03
72GO:0004857: enzyme inhibitor activity8.38E-03
73GO:0004176: ATP-dependent peptidase activity9.59E-03
74GO:0033612: receptor serine/threonine kinase binding9.59E-03
75GO:0016757: transferase activity, transferring glycosyl groups9.61E-03
76GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.02E-02
77GO:0016758: transferase activity, transferring hexosyl groups1.02E-02
78GO:0022891: substrate-specific transmembrane transporter activity1.09E-02
79GO:0005102: receptor binding1.22E-02
80GO:0047134: protein-disulfide reductase activity1.22E-02
81GO:0050662: coenzyme binding1.43E-02
82GO:0003824: catalytic activity1.45E-02
83GO:0016887: ATPase activity1.55E-02
84GO:0016762: xyloglucan:xyloglucosyl transferase activity1.58E-02
85GO:0000156: phosphorelay response regulator activity1.73E-02
86GO:0016759: cellulose synthase activity1.81E-02
87GO:0016722: oxidoreductase activity, oxidizing metal ions1.89E-02
88GO:0008237: metallopeptidase activity1.89E-02
89GO:0005200: structural constituent of cytoskeleton1.89E-02
90GO:0016413: O-acetyltransferase activity1.97E-02
91GO:0016597: amino acid binding1.97E-02
92GO:0009931: calcium-dependent protein serine/threonine kinase activity2.22E-02
93GO:0004683: calmodulin-dependent protein kinase activity2.30E-02
94GO:0016798: hydrolase activity, acting on glycosyl bonds2.30E-02
95GO:0102483: scopolin beta-glucosidase activity2.30E-02
96GO:0008757: S-adenosylmethionine-dependent methyltransferase activity2.39E-02
97GO:0004222: metalloendopeptidase activity2.65E-02
98GO:0030246: carbohydrate binding2.67E-02
99GO:0050897: cobalt ion binding2.74E-02
100GO:0003746: translation elongation factor activity2.93E-02
101GO:0003993: acid phosphatase activity3.02E-02
102GO:0005516: calmodulin binding3.07E-02
103GO:0052689: carboxylic ester hydrolase activity3.08E-02
104GO:0008422: beta-glucosidase activity3.12E-02
105GO:0051539: 4 iron, 4 sulfur cluster binding3.21E-02
106GO:0004364: glutathione transferase activity3.41E-02
107GO:0042803: protein homodimerization activity3.50E-02
108GO:0051537: 2 iron, 2 sulfur cluster binding3.71E-02
109GO:0051287: NAD binding4.02E-02
110GO:0009055: electron carrier activity4.40E-02
111GO:0045330: aspartyl esterase activity4.66E-02
112GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.99E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.96E-11
2GO:0009941: chloroplast envelope5.54E-10
3GO:0009535: chloroplast thylakoid membrane3.17E-09
4GO:0009570: chloroplast stroma6.33E-09
5GO:0048046: apoplast6.35E-08
6GO:0009534: chloroplast thylakoid5.70E-07
7GO:0009579: thylakoid4.98E-05
8GO:0009533: chloroplast stromal thylakoid9.14E-05
9GO:0009523: photosystem II1.03E-04
10GO:0009706: chloroplast inner membrane1.50E-04
11GO:0009782: photosystem I antenna complex1.60E-04
12GO:0009923: fatty acid elongase complex1.60E-04
13GO:0010319: stromule1.64E-04
14GO:0010287: plastoglobule2.01E-04
15GO:0009505: plant-type cell wall3.51E-04
16GO:0000139: Golgi membrane4.19E-04
17GO:0030076: light-harvesting complex4.92E-04
18GO:0005853: eukaryotic translation elongation factor 1 complex5.97E-04
19GO:0005618: cell wall1.46E-03
20GO:0046658: anchored component of plasma membrane3.37E-03
21GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.72E-03
22GO:0016324: apical plasma membrane4.64E-03
23GO:0009536: plastid4.80E-03
24GO:0030095: chloroplast photosystem II6.67E-03
25GO:0000312: plastid small ribosomal subunit6.67E-03
26GO:0005875: microtubule associated complex7.79E-03
27GO:0016021: integral component of membrane8.74E-03
28GO:0009543: chloroplast thylakoid lumen1.05E-02
29GO:0009522: photosystem I1.43E-02
30GO:0005576: extracellular region1.64E-02
31GO:0005794: Golgi apparatus2.15E-02
32GO:0005886: plasma membrane2.36E-02
33GO:0031969: chloroplast membrane2.79E-02
34GO:0031225: anchored component of membrane3.20E-02
35GO:0031977: thylakoid lumen3.31E-02
36GO:0005856: cytoskeleton3.81E-02
37GO:0005743: mitochondrial inner membrane3.82E-02
38GO:0005747: mitochondrial respiratory chain complex I4.99E-02
Gene type



Gene DE type