co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G34220

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
2	GO:0090627: plant epidermal cell differentiation	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0045014: negative regulation of transcription by glucose	0.00E+00
5	GO:0080170: hydrogen peroxide transmembrane transport	8.70E-06
6	GO:0009913: epidermal cell differentiation	3.99E-05
7	GO:0034220: ion transmembrane transport	5.71E-05
8	GO:0009958: positive gravitropism	6.42E-05
9	GO:0046467: membrane lipid biosynthetic process	1.42E-04
10	GO:0006106: fumarate metabolic process	1.42E-04
11	GO:0009733: response to auxin	1.75E-04
12	GO:0015995: chlorophyll biosynthetic process	1.92E-04
13	GO:0009773: photosynthetic electron transport in photosystem I	2.49E-04
14	GO:0045490: pectin catabolic process	2.82E-04
15	GO:0006898: receptor-mediated endocytosis	3.25E-04
16	GO:0043255: regulation of carbohydrate biosynthetic process	3.25E-04
17	GO:0010115: regulation of abscisic acid biosynthetic process	3.25E-04
18	GO:0010541: acropetal auxin transport	3.25E-04
19	GO:0001736: establishment of planar polarity	3.25E-04
20	GO:0010588: cotyledon vascular tissue pattern formation	3.27E-04
21	GO:0048467: gynoecium development	3.70E-04
22	GO:0010167: response to nitrate	4.15E-04
23	GO:0006833: water transport	4.63E-04
24	GO:0010160: formation of animal organ boundary	5.33E-04
25	GO:0015714: phosphoenolpyruvate transport	5.33E-04
26	GO:0016045: detection of bacterium	5.33E-04
27	GO:0010359: regulation of anion channel activity	5.33E-04
28	GO:0009416: response to light stimulus	7.22E-04
29	GO:0043481: anthocyanin accumulation in tissues in response to UV light	7.63E-04
30	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	7.63E-04
31	GO:1901332: negative regulation of lateral root development	7.63E-04
32	GO:0051513: regulation of monopolar cell growth	7.63E-04
33	GO:0048443: stamen development	7.98E-04
34	GO:0042335: cuticle development	9.27E-04
35	GO:0080022: primary root development	9.27E-04
36	GO:0010087: phloem or xylem histogenesis	9.27E-04
37	GO:0009624: response to nematode	9.61E-04
38	GO:0010305: leaf vascular tissue pattern formation	9.96E-04
39	GO:0015713: phosphoglycerate transport	1.01E-03
40	GO:0030104: water homeostasis	1.01E-03
41	GO:0010109: regulation of photosynthesis	1.01E-03
42	GO:0045727: positive regulation of translation	1.01E-03
43	GO:0048825: cotyledon development	1.14E-03
44	GO:0016123: xanthophyll biosynthetic process	1.28E-03
45	GO:0006810: transport	1.31E-03
46	GO:0016042: lipid catabolic process	1.33E-03
47	GO:0009228: thiamine biosynthetic process	1.57E-03
48	GO:0060918: auxin transport	1.57E-03
49	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.57E-03
50	GO:0010337: regulation of salicylic acid metabolic process	1.57E-03
51	GO:0006561: proline biosynthetic process	1.57E-03
52	GO:0006751: glutathione catabolic process	1.57E-03
53	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.57E-03
54	GO:0006633: fatty acid biosynthetic process	1.69E-03
55	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.88E-03
56	GO:0009651: response to salt stress	2.10E-03
57	GO:1900057: positive regulation of leaf senescence	2.21E-03
58	GO:0010444: guard mother cell differentiation	2.21E-03
59	GO:0009772: photosynthetic electron transport in photosystem II	2.21E-03
60	GO:1900056: negative regulation of leaf senescence	2.21E-03
61	GO:0009734: auxin-activated signaling pathway	2.33E-03
62	GO:0010311: lateral root formation	2.38E-03
63	GO:0008610: lipid biosynthetic process	2.56E-03
64	GO:0010078: maintenance of root meristem identity	2.56E-03
65	GO:0031540: regulation of anthocyanin biosynthetic process	2.56E-03
66	GO:0055075: potassium ion homeostasis	2.56E-03
67	GO:0016559: peroxisome fission	2.56E-03
68	GO:0048527: lateral root development	2.61E-03
69	GO:0032544: plastid translation	2.93E-03
70	GO:0043562: cellular response to nitrogen levels	2.93E-03
71	GO:0010206: photosystem II repair	3.31E-03
72	GO:0048589: developmental growth	3.31E-03
73	GO:0009926: auxin polar transport	3.68E-03
74	GO:0010205: photoinhibition	3.71E-03
75	GO:0009638: phototropism	3.71E-03
76	GO:0006032: chitin catabolic process	4.12E-03
77	GO:0009688: abscisic acid biosynthetic process	4.12E-03
78	GO:0048829: root cap development	4.12E-03
79	GO:0080167: response to karrikin	4.34E-03
80	GO:0052544: defense response by callose deposition in cell wall	4.55E-03
81	GO:0009750: response to fructose	4.55E-03
82	GO:0048765: root hair cell differentiation	4.55E-03
83	GO:0009684: indoleacetic acid biosynthetic process	4.55E-03
84	GO:0046856: phosphatidylinositol dephosphorylation	4.55E-03
85	GO:0000038: very long-chain fatty acid metabolic process	4.55E-03
86	GO:0009664: plant-type cell wall organization	4.61E-03
87	GO:0055085: transmembrane transport	4.76E-03
88	GO:0016024: CDP-diacylglycerol biosynthetic process	4.99E-03
89	GO:0015706: nitrate transport	4.99E-03
90	GO:0010152: pollen maturation	4.99E-03
91	GO:0008361: regulation of cell size	4.99E-03
92	GO:0006857: oligopeptide transport	5.30E-03
93	GO:0010102: lateral root morphogenesis	5.45E-03
94	GO:0009785: blue light signaling pathway	5.45E-03
95	GO:0010628: positive regulation of gene expression	5.45E-03
96	GO:0006108: malate metabolic process	5.45E-03
97	GO:0010229: inflorescence development	5.45E-03
98	GO:0009718: anthocyanin-containing compound biosynthetic process	5.45E-03
99	GO:0010020: chloroplast fission	5.92E-03
100	GO:0010207: photosystem II assembly	5.92E-03
101	GO:0010540: basipetal auxin transport	5.92E-03
102	GO:0010143: cutin biosynthetic process	5.92E-03
103	GO:0048367: shoot system development	6.04E-03
104	GO:0009825: multidimensional cell growth	6.41E-03
105	GO:0071732: cellular response to nitric oxide	6.41E-03
106	GO:0010053: root epidermal cell differentiation	6.41E-03
107	GO:0010025: wax biosynthetic process	6.91E-03
108	GO:0006636: unsaturated fatty acid biosynthetic process	6.91E-03
109	GO:0042023: DNA endoreduplication	6.91E-03
110	GO:2000377: regulation of reactive oxygen species metabolic process	7.42E-03
111	GO:0051726: regulation of cell cycle	7.46E-03
112	GO:0007017: microtubule-based process	7.95E-03
113	GO:0016114: terpenoid biosynthetic process	8.49E-03
114	GO:0003333: amino acid transmembrane transport	8.49E-03
115	GO:0016998: cell wall macromolecule catabolic process	8.49E-03
116	GO:0048511: rhythmic process	8.49E-03
117	GO:0009414: response to water deprivation	9.32E-03
118	GO:0071369: cellular response to ethylene stimulus	9.62E-03
119	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	9.62E-03
120	GO:0042742: defense response to bacterium	9.66E-03
121	GO:0006284: base-excision repair	1.02E-02
122	GO:0042127: regulation of cell proliferation	1.02E-02
123	GO:0071472: cellular response to salt stress	1.20E-02
124	GO:0010182: sugar mediated signaling pathway	1.20E-02
125	GO:0007623: circadian rhythm	1.22E-02
126	GO:0042752: regulation of circadian rhythm	1.26E-02
127	GO:0009735: response to cytokinin	1.32E-02
128	GO:0009851: auxin biosynthetic process	1.33E-02
129	GO:0016032: viral process	1.46E-02
130	GO:0071281: cellular response to iron ion	1.53E-02
131	GO:0009409: response to cold	1.53E-02
132	GO:0010252: auxin homeostasis	1.60E-02
133	GO:0009639: response to red or far red light	1.60E-02
134	GO:0009828: plant-type cell wall loosening	1.60E-02
135	GO:0071805: potassium ion transmembrane transport	1.67E-02
136	GO:0016567: protein ubiquitination	1.71E-02
137	GO:0042128: nitrate assimilation	1.96E-02
138	GO:0007049: cell cycle	2.11E-02
139	GO:0030244: cellulose biosynthetic process	2.19E-02
140	GO:0009723: response to ethylene	2.19E-02
141	GO:0010218: response to far red light	2.34E-02
142	GO:0009631: cold acclimation	2.42E-02
143	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.43E-02
144	GO:0006865: amino acid transport	2.51E-02
145	GO:0009637: response to blue light	2.59E-02
146	GO:0034599: cellular response to oxidative stress	2.67E-02
147	GO:0006099: tricarboxylic acid cycle	2.67E-02
148	GO:0009737: response to abscisic acid	2.99E-02
149	GO:0006869: lipid transport	3.08E-02
150	GO:0008283: cell proliferation	3.10E-02
151	GO:0009640: photomorphogenesis	3.10E-02
152	GO:0009408: response to heat	3.46E-02
153	GO:0006855: drug transmembrane transport	3.46E-02
154	GO:0009809: lignin biosynthetic process	3.83E-02
155	GO:0006364: rRNA processing	3.83E-02
156	GO:0006813: potassium ion transport	3.83E-02
157	GO:0006096: glycolytic process	4.32E-02
158	GO:0048316: seed development	4.42E-02
159	GO:0042545: cell wall modification	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
4	GO:0010011: auxin binding	1.63E-05
5	GO:0030570: pectate lyase activity	3.89E-05
6	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	1.42E-04
7	GO:0045485: omega-6 fatty acid desaturase activity	1.42E-04
8	GO:0004333: fumarate hydratase activity	1.42E-04
9	GO:0015250: water channel activity	1.52E-04
10	GO:0016829: lyase activity	1.88E-04
11	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	3.25E-04
12	GO:0003839: gamma-glutamylcyclotransferase activity	3.25E-04
13	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	3.25E-04
14	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	3.25E-04
15	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.13E-04
16	GO:0090729: toxin activity	5.33E-04
17	GO:0052689: carboxylic ester hydrolase activity	9.00E-04
18	GO:0010328: auxin influx transmembrane transporter activity	1.01E-03
19	GO:0052793: pectin acetylesterase activity	1.01E-03
20	GO:0015120: phosphoglycerate transmembrane transporter activity	1.01E-03
21	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.01E-03
22	GO:0004871: signal transducer activity	1.09E-03
23	GO:0008725: DNA-3-methyladenine glycosylase activity	1.28E-03
24	GO:0016846: carbon-sulfur lyase activity	1.28E-03
25	GO:0016791: phosphatase activity	1.47E-03
26	GO:0004629: phospholipase C activity	1.57E-03
27	GO:0035673: oligopeptide transmembrane transporter activity	1.57E-03
28	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.57E-03
29	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	1.57E-03
30	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.57E-03
31	GO:0004017: adenylate kinase activity	1.88E-03
32	GO:0004435: phosphatidylinositol phospholipase C activity	1.88E-03
33	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.50E-03
34	GO:0005515: protein binding	2.56E-03
35	GO:0005215: transporter activity	2.95E-03
36	GO:0016788: hydrolase activity, acting on ester bonds	3.38E-03
37	GO:0015112: nitrate transmembrane transporter activity	3.71E-03
38	GO:0004568: chitinase activity	4.12E-03
39	GO:0015293: symporter activity	4.13E-03
40	GO:0008794: arsenate reductase (glutaredoxin) activity	4.55E-03
41	GO:0047372: acylglycerol lipase activity	4.55E-03
42	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	4.99E-03
43	GO:0015198: oligopeptide transporter activity	4.99E-03
44	GO:0004565: beta-galactosidase activity	5.45E-03
45	GO:0010329: auxin efflux transmembrane transporter activity	5.45E-03
46	GO:0004022: alcohol dehydrogenase (NAD) activity	5.45E-03
47	GO:0031072: heat shock protein binding	5.45E-03
48	GO:0008266: poly(U) RNA binding	5.92E-03
49	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.91E-03
50	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.91E-03
51	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.91E-03
52	GO:0016746: transferase activity, transferring acyl groups	7.24E-03
53	GO:0005528: FK506 binding	7.42E-03
54	GO:0015079: potassium ion transmembrane transporter activity	7.95E-03
55	GO:0004176: ATP-dependent peptidase activity	8.49E-03
56	GO:0003756: protein disulfide isomerase activity	1.02E-02
57	GO:0008289: lipid binding	1.08E-02
58	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.14E-02
59	GO:0050662: coenzyme binding	1.26E-02
60	GO:0019901: protein kinase binding	1.33E-02
61	GO:0004518: nuclease activity	1.46E-02
62	GO:0042802: identical protein binding	1.55E-02
63	GO:0005200: structural constituent of cytoskeleton	1.67E-02
64	GO:0030247: polysaccharide binding	2.03E-02
65	GO:0005096: GTPase activator activity	2.26E-02
66	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.76E-02
67	GO:0051537: 2 iron, 2 sulfur cluster binding	3.28E-02
68	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.46E-02
69	GO:0003924: GTPase activity	3.46E-02
70	GO:0009055: electron carrier activity	3.71E-02
71	GO:0015171: amino acid transmembrane transporter activity	4.12E-02
72	GO:0031625: ubiquitin protein ligase binding	4.12E-02
73	GO:0045330: aspartyl esterase activity	4.12E-02
74	GO:0004650: polygalacturonase activity	4.62E-02
75	GO:0030599: pectinesterase activity	4.72E-02
76	GO:0022857: transmembrane transporter activity	4.72E-02
77	GO:0003779: actin binding	4.82E-02
78	GO:0051082: unfolded protein binding	4.92E-02
79	GO:0016491: oxidoreductase activity	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
3	GO:0005886: plasma membrane	4.79E-05
4	GO:0009941: chloroplast envelope	1.27E-04
5	GO:0045239: tricarboxylic acid cycle enzyme complex	1.42E-04
6	GO:0043674: columella	1.42E-04
7	GO:0009534: chloroplast thylakoid	2.07E-04
8	GO:0030093: chloroplast photosystem I	3.25E-04
9	GO:0015630: microtubule cytoskeleton	7.63E-04
10	GO:0009531: secondary cell wall	7.63E-04
11	GO:0009535: chloroplast thylakoid membrane	8.70E-04
12	GO:0009507: chloroplast	1.48E-03
13	GO:0042807: central vacuole	2.21E-03
14	GO:0009986: cell surface	2.21E-03
15	GO:0005887: integral component of plasma membrane	2.21E-03
16	GO:0016020: membrane	2.83E-03
17	GO:0008180: COP9 signalosome	3.31E-03
18	GO:0009505: plant-type cell wall	3.67E-03
19	GO:0031969: chloroplast membrane	4.34E-03
20	GO:0009508: plastid chromosome	5.45E-03
21	GO:0009706: chloroplast inner membrane	7.04E-03
22	GO:0009543: chloroplast thylakoid lumen	8.81E-03
23	GO:0016021: integral component of membrane	9.28E-03
24	GO:0005576: extracellular region	1.48E-02
25	GO:0009295: nucleoid	1.67E-02
26	GO:0009579: thylakoid	1.85E-02
27	GO:0009707: chloroplast outer membrane	2.19E-02
28	GO:0019005: SCF ubiquitin ligase complex	2.19E-02
29	GO:0009570: chloroplast stroma	2.41E-02
30	GO:0031977: thylakoid lumen	2.93E-02
31	GO:0005768: endosome	3.13E-02
32	GO:0000502: proteasome complex	3.83E-02
33	GO:0005773: vacuole	4.33E-02
34	GO:0010008: endosome membrane	4.42E-02