co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G33670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010203: response to very low fluence red light stimulus	0.00E+00
2	GO:0043171: peptide catabolic process	0.00E+00
3	GO:0010378: temperature compensation of the circadian clock	0.00E+00
4	GO:0030644: cellular chloride ion homeostasis	0.00E+00
5	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
6	GO:1903428: positive regulation of reactive oxygen species biosynthetic process	0.00E+00
7	GO:0009768: photosynthesis, light harvesting in photosystem I	2.76E-14
8	GO:0018298: protein-chromophore linkage	2.12E-11
9	GO:0010218: response to far red light	1.55E-09
10	GO:0009769: photosynthesis, light harvesting in photosystem II	2.15E-06
11	GO:0009645: response to low light intensity stimulus	2.15E-06
12	GO:0009637: response to blue light	2.93E-06
13	GO:0010114: response to red light	5.67E-06
14	GO:0009644: response to high light intensity	6.93E-06
15	GO:0015979: photosynthesis	7.58E-06
16	GO:0007623: circadian rhythm	8.63E-06
17	GO:0009409: response to cold	1.04E-05
18	GO:0009416: response to light stimulus	1.26E-05
19	GO:0010600: regulation of auxin biosynthetic process	3.23E-05
20	GO:0000380: alternative mRNA splicing, via spliceosome	5.18E-05
21	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.06E-04
22	GO:0010161: red light signaling pathway	1.40E-04
23	GO:0009585: red, far-red light phototransduction	1.59E-04
24	GO:0010928: regulation of auxin mediated signaling pathway	1.78E-04
25	GO:0010496: intercellular transport	2.11E-04
26	GO:1990641: response to iron ion starvation	2.11E-04
27	GO:1902265: abscisic acid homeostasis	2.11E-04
28	GO:0015812: gamma-aminobutyric acid transport	2.11E-04
29	GO:0032958: inositol phosphate biosynthetic process	2.11E-04
30	GO:0010201: response to continuous far red light stimulus by the high-irradiance response system	2.11E-04
31	GO:0034472: snRNA 3'-end processing	2.11E-04
32	GO:0010286: heat acclimation	2.79E-04
33	GO:0009817: defense response to fungus, incompatible interaction	4.62E-04
34	GO:0006611: protein export from nucleus	4.71E-04
35	GO:0006883: cellular sodium ion homeostasis	4.71E-04
36	GO:0090057: root radial pattern formation	4.71E-04
37	GO:1902884: positive regulation of response to oxidative stress	4.71E-04
38	GO:0051170: nuclear import	4.71E-04
39	GO:0006101: citrate metabolic process	4.71E-04
40	GO:0006355: regulation of transcription, DNA-templated	6.88E-04
41	GO:0042256: mature ribosome assembly	7.67E-04
42	GO:1902448: positive regulation of shade avoidance	7.67E-04
43	GO:0042344: indole glucosinolate catabolic process	7.67E-04
44	GO:0006598: polyamine catabolic process	7.67E-04
45	GO:0017006: protein-tetrapyrrole linkage	7.67E-04
46	GO:1901562: response to paraquat	7.67E-04
47	GO:0000055: ribosomal large subunit export from nucleus	7.67E-04
48	GO:0042542: response to hydrogen peroxide	8.15E-04
49	GO:0009640: photomorphogenesis	8.58E-04
50	GO:0008643: carbohydrate transport	9.45E-04
51	GO:0048511: rhythmic process	1.05E-03
52	GO:0006020: inositol metabolic process	1.09E-03
53	GO:0010601: positive regulation of auxin biosynthetic process	1.09E-03
54	GO:0009584: detection of visible light	1.09E-03
55	GO:0044211: CTP salvage	1.09E-03
56	GO:0015749: monosaccharide transport	1.09E-03
57	GO:1901332: negative regulation of lateral root development	1.09E-03
58	GO:0010017: red or far-red light signaling pathway	1.15E-03
59	GO:0009765: photosynthesis, light harvesting	1.45E-03
60	GO:2000306: positive regulation of photomorphogenesis	1.45E-03
61	GO:1901002: positive regulation of response to salt stress	1.45E-03
62	GO:0030104: water homeostasis	1.45E-03
63	GO:0044206: UMP salvage	1.45E-03
64	GO:0006646: phosphatidylethanolamine biosynthetic process	1.45E-03
65	GO:0009687: abscisic acid metabolic process	1.45E-03
66	GO:0080167: response to karrikin	1.80E-03
67	GO:0007029: endoplasmic reticulum organization	1.85E-03
68	GO:0048578: positive regulation of long-day photoperiodism, flowering	1.85E-03
69	GO:0043097: pyrimidine nucleoside salvage	1.85E-03
70	GO:0042732: D-xylose metabolic process	2.28E-03
71	GO:0031053: primary miRNA processing	2.28E-03
72	GO:0045962: positive regulation of development, heterochronic	2.28E-03
73	GO:0006206: pyrimidine nucleobase metabolic process	2.28E-03
74	GO:0000741: karyogamy	2.28E-03
75	GO:0009635: response to herbicide	2.28E-03
76	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.74E-03
77	GO:0017148: negative regulation of translation	2.74E-03
78	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	2.74E-03
79	GO:0010029: regulation of seed germination	3.20E-03
80	GO:0048437: floral organ development	3.23E-03
81	GO:0010196: nonphotochemical quenching	3.23E-03
82	GO:0010044: response to aluminum ion	3.23E-03
83	GO:0009061: anaerobic respiration	3.74E-03
84	GO:0009819: drought recovery	3.74E-03
85	GO:0010078: maintenance of root meristem identity	3.74E-03
86	GO:0009704: de-etiolation	3.74E-03
87	GO:0032508: DNA duplex unwinding	3.74E-03
88	GO:0006102: isocitrate metabolic process	3.74E-03
89	GO:0000160: phosphorelay signal transduction system	4.14E-03
90	GO:0010099: regulation of photomorphogenesis	4.29E-03
91	GO:0009827: plant-type cell wall modification	4.29E-03
92	GO:0001510: RNA methylation	4.29E-03
93	GO:0010119: regulation of stomatal movement	4.55E-03
94	GO:0010043: response to zinc ion	4.55E-03
95	GO:0046685: response to arsenic-containing substance	4.85E-03
96	GO:0006098: pentose-phosphate shunt	4.85E-03
97	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	4.85E-03
98	GO:0090333: regulation of stomatal closure	4.85E-03
99	GO:0046916: cellular transition metal ion homeostasis	4.85E-03
100	GO:0045087: innate immune response	4.99E-03
101	GO:0009638: phototropism	5.44E-03
102	GO:0030042: actin filament depolymerization	5.44E-03
103	GO:0048354: mucilage biosynthetic process involved in seed coat development	5.44E-03
104	GO:0009970: cellular response to sulfate starvation	6.06E-03
105	GO:0055062: phosphate ion homeostasis	6.06E-03
106	GO:0006995: cellular response to nitrogen starvation	6.06E-03
107	GO:0009641: shade avoidance	6.06E-03
108	GO:0009414: response to water deprivation	6.38E-03
109	GO:0009682: induced systemic resistance	6.69E-03
110	GO:0052544: defense response by callose deposition in cell wall	6.69E-03
111	GO:0009735: response to cytokinin	6.81E-03
112	GO:0006351: transcription, DNA-templated	6.86E-03
113	GO:0009651: response to salt stress	7.22E-03
114	GO:0016925: protein sumoylation	7.36E-03
115	GO:0007165: signal transduction	7.95E-03
116	GO:2000012: regulation of auxin polar transport	8.04E-03
117	GO:0050826: response to freezing	8.04E-03
118	GO:0009718: anthocyanin-containing compound biosynthetic process	8.04E-03
119	GO:0009737: response to abscisic acid	8.31E-03
120	GO:0009266: response to temperature stimulus	8.75E-03
121	GO:0010207: photosystem II assembly	8.75E-03
122	GO:0007015: actin filament organization	8.75E-03
123	GO:0090351: seedling development	9.48E-03
124	GO:0010030: positive regulation of seed germination	9.48E-03
125	GO:0006406: mRNA export from nucleus	1.10E-02
126	GO:0016575: histone deacetylation	1.18E-02
127	GO:0010431: seed maturation	1.26E-02
128	GO:0009269: response to desiccation	1.26E-02
129	GO:0003333: amino acid transmembrane transport	1.26E-02
130	GO:0019748: secondary metabolic process	1.34E-02
131	GO:0009693: ethylene biosynthetic process	1.43E-02
132	GO:0071215: cellular response to abscisic acid stimulus	1.43E-02
133	GO:0009408: response to heat	1.46E-02
134	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.61E-02
135	GO:0008284: positive regulation of cell proliferation	1.61E-02
136	GO:0010501: RNA secondary structure unwinding	1.70E-02
137	GO:0009741: response to brassinosteroid	1.79E-02
138	GO:0010197: polar nucleus fusion	1.79E-02
139	GO:0046323: glucose import	1.79E-02
140	GO:0006814: sodium ion transport	1.88E-02
141	GO:0042752: regulation of circadian rhythm	1.88E-02
142	GO:0008654: phospholipid biosynthetic process	1.98E-02
143	GO:0009556: microsporogenesis	1.98E-02
144	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.08E-02
145	GO:0009630: gravitropism	2.18E-02
146	GO:0010228: vegetative to reproductive phase transition of meristem	2.24E-02
147	GO:1901657: glycosyl compound metabolic process	2.28E-02
148	GO:0019760: glucosinolate metabolic process	2.38E-02
149	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.40E-02
150	GO:0008380: RNA splicing	2.56E-02
151	GO:0009617: response to bacterium	2.56E-02
152	GO:0015995: chlorophyll biosynthetic process	3.04E-02
153	GO:0048573: photoperiodism, flowering	3.04E-02
154	GO:0035556: intracellular signal transduction	3.20E-02
155	GO:0009834: plant-type secondary cell wall biogenesis	3.50E-02
156	GO:0006970: response to osmotic stress	3.57E-02
157	GO:0009631: cold acclimation	3.62E-02
158	GO:0007049: cell cycle	3.70E-02
159	GO:0006099: tricarboxylic acid cycle	3.99E-02
160	GO:0055085: transmembrane transport	4.02E-02
161	GO:0005975: carbohydrate metabolic process	4.15E-02
162	GO:0030001: metal ion transport	4.24E-02
163	GO:0010200: response to chitin	4.24E-02
164	GO:0044550: secondary metabolite biosynthetic process	4.46E-02
165	GO:0051707: response to other organism	4.63E-02
166	GO:0009926: auxin polar transport	4.63E-02
167	GO:0045892: negative regulation of transcription, DNA-templated	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
2	GO:0030504: inorganic diphosphate transmembrane transporter activity	0.00E+00
3	GO:0009045: xylose isomerase activity	0.00E+00
4	GO:0080082: esculin beta-glucosidase activity	0.00E+00
5	GO:0004567: beta-mannosidase activity	0.00E+00
6	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
7	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
8	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
9	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
10	GO:0019912: cyclin-dependent protein kinase activating kinase activity	0.00E+00
11	GO:0031409: pigment binding	1.01E-14
12	GO:0016168: chlorophyll binding	8.38E-12
13	GO:0009679: hexose:proton symporter activity	2.11E-04
14	GO:0000829: inositol heptakisphosphate kinase activity	2.11E-04
15	GO:0010013: N-1-naphthylphthalamic acid binding	2.11E-04
16	GO:0080079: cellobiose glucosidase activity	2.11E-04
17	GO:0046870: cadmium ion binding	2.11E-04
18	GO:0000828: inositol hexakisphosphate kinase activity	2.11E-04
19	GO:0070006: metalloaminopeptidase activity	2.11E-04
20	GO:0015185: gamma-aminobutyric acid transmembrane transporter activity	2.11E-04
21	GO:0031516: far-red light photoreceptor activity	2.11E-04
22	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.11E-04
23	GO:0046872: metal ion binding	2.80E-04
24	GO:0004177: aminopeptidase activity	4.36E-04
25	GO:0003994: aconitate hydratase activity	4.71E-04
26	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	4.71E-04
27	GO:0015180: L-alanine transmembrane transporter activity	4.71E-04
28	GO:0032791: lead ion binding	4.71E-04
29	GO:0009883: red or far-red light photoreceptor activity	4.71E-04
30	GO:0004609: phosphatidylserine decarboxylase activity	4.71E-04
31	GO:0005515: protein binding	7.11E-04
32	GO:0046592: polyamine oxidase activity	7.67E-04
33	GO:0019948: SUMO activating enzyme activity	7.67E-04
34	GO:0017150: tRNA dihydrouridine synthase activity	7.67E-04
35	GO:0008020: G-protein coupled photoreceptor activity	7.67E-04
36	GO:0004096: catalase activity	7.67E-04
37	GO:0015189: L-lysine transmembrane transporter activity	1.09E-03
38	GO:0048027: mRNA 5'-UTR binding	1.09E-03
39	GO:0015181: arginine transmembrane transporter activity	1.09E-03
40	GO:0043023: ribosomal large subunit binding	1.09E-03
41	GO:0004845: uracil phosphoribosyltransferase activity	1.45E-03
42	GO:0005313: L-glutamate transmembrane transporter activity	1.45E-03
43	GO:0042277: peptide binding	1.45E-03
44	GO:0010294: abscisic acid glucosyltransferase activity	1.85E-03
45	GO:0015145: monosaccharide transmembrane transporter activity	1.85E-03
46	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.85E-03
47	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.85E-03
48	GO:0004629: phospholipase C activity	2.28E-03
49	GO:0015562: efflux transmembrane transporter activity	2.28E-03
50	GO:0019137: thioglucosidase activity	2.28E-03
51	GO:0000156: phosphorelay response regulator activity	2.39E-03
52	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.66E-03
53	GO:0004849: uridine kinase activity	2.74E-03
54	GO:0004435: phosphatidylinositol phospholipase C activity	2.74E-03
55	GO:0008270: zinc ion binding	3.55E-03
56	GO:0102483: scopolin beta-glucosidase activity	3.56E-03
57	GO:0004564: beta-fructofuranosidase activity	3.74E-03
58	GO:0004525: ribonuclease III activity	3.74E-03
59	GO:0005351: sugar:proton symporter activity	3.76E-03
60	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.29E-03
61	GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity	4.29E-03
62	GO:0050897: cobalt ion binding	4.55E-03
63	GO:0000989: transcription factor activity, transcription factor binding	4.85E-03
64	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	4.85E-03
65	GO:0004575: sucrose alpha-glucosidase activity	5.44E-03
66	GO:0008422: beta-glucosidase activity	5.45E-03
67	GO:0004673: protein histidine kinase activity	6.06E-03
68	GO:0047372: acylglycerol lipase activity	6.69E-03
69	GO:0004565: beta-galactosidase activity	8.04E-03
70	GO:0005315: inorganic phosphate transmembrane transporter activity	8.04E-03
71	GO:0000155: phosphorelay sensor kinase activity	8.04E-03
72	GO:0008131: primary amine oxidase activity	8.75E-03
73	GO:0004497: monooxygenase activity	8.86E-03
74	GO:0003712: transcription cofactor activity	9.48E-03
75	GO:0004407: histone deacetylase activity	1.10E-02
76	GO:0008324: cation transmembrane transporter activity	1.18E-02
77	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.20E-02
78	GO:0004707: MAP kinase activity	1.26E-02
79	GO:0019706: protein-cysteine S-palmitoyltransferase activity	1.26E-02
80	GO:0008514: organic anion transmembrane transporter activity	1.52E-02
81	GO:0015144: carbohydrate transmembrane transporter activity	1.86E-02
82	GO:0015297: antiporter activity	2.05E-02
83	GO:0003677: DNA binding	2.05E-02
84	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.50E-02
85	GO:0003746: translation elongation factor activity	3.86E-02
86	GO:0003697: single-stranded DNA binding	3.86E-02
87	GO:0004672: protein kinase activity	3.95E-02
88	GO:0003729: mRNA binding	4.03E-02
89	GO:0008233: peptidase activity	4.04E-02
90	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.22E-02
91	GO:0051539: 4 iron, 4 sulfur cluster binding	4.24E-02
92	GO:0061630: ubiquitin protein ligase activity	4.32E-02
93	GO:0020037: heme binding	4.38E-02
94	GO:0019825: oxygen binding	4.62E-02
95	GO:0004185: serine-type carboxypeptidase activity	4.63E-02

Rank	GO Term	Adjusted P value
1	GO:0030076: light-harvesting complex	8.81E-13
2	GO:0009522: photosystem I	5.14E-11
3	GO:0010287: plastoglobule	1.99E-10
4	GO:0009523: photosystem II	2.24E-07
5	GO:0009579: thylakoid	2.77E-06
6	GO:0009534: chloroplast thylakoid	2.89E-06
7	GO:0009517: PSII associated light-harvesting complex II	3.23E-05
8	GO:0042651: thylakoid membrane	5.99E-05
9	GO:0009941: chloroplast envelope	6.74E-05
10	GO:0005777: peroxisome	1.30E-04
11	GO:0009783: photosystem II antenna complex	2.11E-04
12	GO:0009535: chloroplast thylakoid membrane	2.90E-04
13	GO:0016020: membrane	1.42E-03
14	GO:0010445: nuclear dicing body	1.45E-03
15	GO:0009898: cytoplasmic side of plasma membrane	1.45E-03
16	GO:0032586: protein storage vacuole membrane	1.45E-03
17	GO:0016607: nuclear speck	1.59E-03
18	GO:0016021: integral component of membrane	1.75E-03
19	GO:0005851: eukaryotic translation initiation factor 2B complex	2.28E-03
20	GO:0009533: chloroplast stromal thylakoid	3.23E-03
21	GO:0000326: protein storage vacuole	4.29E-03
22	GO:0031090: organelle membrane	4.85E-03
23	GO:0016604: nuclear body	5.44E-03
24	GO:0005773: vacuole	7.44E-03
25	GO:0005938: cell cortex	8.04E-03
26	GO:0005681: spliceosomal complex	1.03E-02
27	GO:0009507: chloroplast	1.27E-02
28	GO:0015629: actin cytoskeleton	1.43E-02
29	GO:0031965: nuclear membrane	1.98E-02
30	GO:0005618: cell wall	2.72E-02
31	GO:0005667: transcription factor complex	2.92E-02
32	GO:0005886: plasma membrane	3.24E-02
33	GO:0005783: endoplasmic reticulum	3.34E-02
34	GO:0000786: nucleosome	3.74E-02