Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G33660

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
2GO:0006066: alcohol metabolic process0.00E+00
3GO:0033494: ferulate metabolic process0.00E+00
4GO:0061635: regulation of protein complex stability0.00E+00
5GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
9GO:0090042: tubulin deacetylation0.00E+00
10GO:0009773: photosynthetic electron transport in photosystem I1.79E-10
11GO:0015979: photosynthesis7.63E-08
12GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.29E-05
13GO:0006810: transport5.48E-05
14GO:0010037: response to carbon dioxide7.62E-05
15GO:0015976: carbon utilization7.62E-05
16GO:2000122: negative regulation of stomatal complex development7.62E-05
17GO:0018298: protein-chromophore linkage1.42E-04
18GO:0009658: chloroplast organization1.80E-04
19GO:0061077: chaperone-mediated protein folding2.01E-04
20GO:0071588: hydrogen peroxide mediated signaling pathway3.50E-04
21GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.50E-04
22GO:0010362: negative regulation of anion channel activity by blue light3.50E-04
23GO:1904966: positive regulation of vitamin E biosynthetic process3.50E-04
24GO:1904964: positive regulation of phytol biosynthetic process3.50E-04
25GO:0042335: cuticle development3.58E-04
26GO:0032544: plastid translation4.65E-04
27GO:0097054: L-glutamate biosynthetic process7.62E-04
28GO:0010270: photosystem II oxygen evolving complex assembly7.62E-04
29GO:1902326: positive regulation of chlorophyll biosynthetic process7.62E-04
30GO:0071555: cell wall organization8.38E-04
31GO:0006816: calcium ion transport8.86E-04
32GO:0006415: translational termination8.86E-04
33GO:0090506: axillary shoot meristem initiation1.23E-03
34GO:0071492: cellular response to UV-A1.23E-03
35GO:0010207: photosystem II assembly1.29E-03
36GO:0010020: chloroplast fission1.29E-03
37GO:0009735: response to cytokinin1.69E-03
38GO:0007231: osmosensory signaling pathway1.78E-03
39GO:0009152: purine ribonucleotide biosynthetic process1.78E-03
40GO:0046653: tetrahydrofolate metabolic process1.78E-03
41GO:0006537: glutamate biosynthetic process1.78E-03
42GO:0006241: CTP biosynthetic process1.78E-03
43GO:0006165: nucleoside diphosphate phosphorylation1.78E-03
44GO:0006228: UTP biosynthetic process1.78E-03
45GO:0009855: determination of bilateral symmetry1.78E-03
46GO:0043572: plastid fission1.78E-03
47GO:0009768: photosynthesis, light harvesting in photosystem I1.96E-03
48GO:0045490: pectin catabolic process2.06E-03
49GO:0006869: lipid transport2.11E-03
50GO:0019676: ammonia assimilation cycle2.38E-03
51GO:0071486: cellular response to high light intensity2.38E-03
52GO:0009765: photosynthesis, light harvesting2.38E-03
53GO:0006183: GTP biosynthetic process2.38E-03
54GO:0045727: positive regulation of translation2.38E-03
55GO:0015994: chlorophyll metabolic process2.38E-03
56GO:0033500: carbohydrate homeostasis2.38E-03
57GO:0006546: glycine catabolic process2.38E-03
58GO:0009902: chloroplast relocation2.38E-03
59GO:0016117: carotenoid biosynthetic process3.03E-03
60GO:0031365: N-terminal protein amino acid modification3.05E-03
61GO:0016123: xanthophyll biosynthetic process3.05E-03
62GO:0080110: sporopollenin biosynthetic process3.05E-03
63GO:0046785: microtubule polymerization3.05E-03
64GO:0016120: carotene biosynthetic process3.05E-03
65GO:0006564: L-serine biosynthetic process3.05E-03
66GO:0006656: phosphatidylcholine biosynthetic process3.05E-03
67GO:0000413: protein peptidyl-prolyl isomerization3.27E-03
68GO:0010087: phloem or xylem histogenesis3.27E-03
69GO:0048759: xylem vessel member cell differentiation3.76E-03
70GO:0010405: arabinogalactan protein metabolic process3.76E-03
71GO:0042549: photosystem II stabilization3.76E-03
72GO:0016554: cytidine to uridine editing3.76E-03
73GO:0010190: cytochrome b6f complex assembly3.76E-03
74GO:0006828: manganese ion transport3.76E-03
75GO:0006596: polyamine biosynthetic process3.76E-03
76GO:0032973: amino acid export3.76E-03
77GO:0018258: protein O-linked glycosylation via hydroxyproline3.76E-03
78GO:0010019: chloroplast-nucleus signaling pathway4.54E-03
79GO:0010555: response to mannitol4.54E-03
80GO:0009955: adaxial/abaxial pattern specification4.54E-03
81GO:0010014: meristem initiation4.54E-03
82GO:0042372: phylloquinone biosynthetic process4.54E-03
83GO:0080060: integument development4.54E-03
84GO:0010067: procambium histogenesis4.54E-03
85GO:0042026: protein refolding4.54E-03
86GO:0006458: 'de novo' protein folding4.54E-03
87GO:0042545: cell wall modification4.75E-03
88GO:0043090: amino acid import5.36E-03
89GO:0009645: response to low light intensity stimulus5.36E-03
90GO:0009819: drought recovery6.22E-03
91GO:0009642: response to light intensity6.22E-03
92GO:0010027: thylakoid membrane organization6.30E-03
93GO:0009416: response to light stimulus7.10E-03
94GO:0017004: cytochrome complex assembly7.14E-03
95GO:0071482: cellular response to light stimulus7.14E-03
96GO:0009657: plastid organization7.14E-03
97GO:0045454: cell redox homeostasis7.32E-03
98GO:0010411: xyloglucan metabolic process7.43E-03
99GO:0090305: nucleic acid phosphodiester bond hydrolysis8.10E-03
100GO:0006098: pentose-phosphate shunt8.10E-03
101GO:0010206: photosystem II repair8.10E-03
102GO:0080144: amino acid homeostasis8.10E-03
103GO:0000373: Group II intron splicing8.10E-03
104GO:0042742: defense response to bacterium8.13E-03
105GO:0009817: defense response to fungus, incompatible interaction8.23E-03
106GO:0000160: phosphorelay signal transduction system8.66E-03
107GO:0006633: fatty acid biosynthetic process8.79E-03
108GO:0016573: histone acetylation9.10E-03
109GO:0009638: phototropism9.10E-03
110GO:0006779: porphyrin-containing compound biosynthetic process9.10E-03
111GO:1900865: chloroplast RNA modification9.10E-03
112GO:0010119: regulation of stomatal movement9.53E-03
113GO:0007623: circadian rhythm9.92E-03
114GO:0043069: negative regulation of programmed cell death1.01E-02
115GO:0006782: protoporphyrinogen IX biosynthetic process1.01E-02
116GO:0009637: response to blue light1.05E-02
117GO:0009853: photorespiration1.05E-02
118GO:0034599: cellular response to oxidative stress1.09E-02
119GO:0000038: very long-chain fatty acid metabolic process1.12E-02
120GO:0019684: photosynthesis, light reaction1.12E-02
121GO:0010072: primary shoot apical meristem specification1.12E-02
122GO:0009089: lysine biosynthetic process via diaminopimelate1.12E-02
123GO:0043085: positive regulation of catalytic activity1.12E-02
124GO:0000272: polysaccharide catabolic process1.12E-02
125GO:0018119: peptidyl-cysteine S-nitrosylation1.12E-02
126GO:0055114: oxidation-reduction process1.25E-02
127GO:0009744: response to sucrose1.35E-02
128GO:0009725: response to hormone1.35E-02
129GO:0006094: gluconeogenesis1.35E-02
130GO:0009767: photosynthetic electron transport chain1.35E-02
131GO:0042546: cell wall biogenesis1.41E-02
132GO:0009644: response to high light intensity1.46E-02
133GO:0010223: secondary shoot formation1.48E-02
134GO:0010143: cutin biosynthetic process1.48E-02
135GO:0070588: calcium ion transmembrane transport1.60E-02
136GO:0006833: water transport1.73E-02
137GO:0019762: glucosinolate catabolic process1.73E-02
138GO:0006636: unsaturated fatty acid biosynthetic process1.73E-02
139GO:0042254: ribosome biogenesis1.77E-02
140GO:0006487: protein N-linked glycosylation1.86E-02
141GO:0019344: cysteine biosynthetic process1.86E-02
142GO:0009944: polarity specification of adaxial/abaxial axis1.86E-02
143GO:0000027: ribosomal large subunit assembly1.86E-02
144GO:0006338: chromatin remodeling1.86E-02
145GO:0016575: histone deacetylation2.00E-02
146GO:0007017: microtubule-based process2.00E-02
147GO:0016998: cell wall macromolecule catabolic process2.13E-02
148GO:0080092: regulation of pollen tube growth2.28E-02
149GO:0019748: secondary metabolic process2.28E-02
150GO:0030245: cellulose catabolic process2.28E-02
151GO:0016226: iron-sulfur cluster assembly2.28E-02
152GO:0001944: vasculature development2.42E-02
153GO:0009294: DNA mediated transformation2.42E-02
154GO:0046777: protein autophosphorylation2.47E-02
155GO:0010089: xylem development2.57E-02
156GO:0010584: pollen exine formation2.57E-02
157GO:0010118: stomatal movement2.88E-02
158GO:0042631: cellular response to water deprivation2.88E-02
159GO:0000271: polysaccharide biosynthetic process2.88E-02
160GO:0006508: proteolysis2.88E-02
161GO:0034220: ion transmembrane transport2.88E-02
162GO:0045489: pectin biosynthetic process3.04E-02
163GO:0006662: glycerol ether metabolic process3.04E-02
164GO:0055085: transmembrane transport3.38E-02
165GO:0006457: protein folding3.48E-02
166GO:0032259: methylation3.49E-02
167GO:0000302: response to reactive oxygen species3.53E-02
168GO:0002229: defense response to oomycetes3.53E-02
169GO:1901657: glycosyl compound metabolic process3.87E-02
170GO:0010090: trichome morphogenesis3.87E-02
171GO:0009409: response to cold3.96E-02
172GO:0019760: glucosinolate metabolic process4.04E-02
173GO:0006413: translational initiation4.18E-02
174GO:0001666: response to hypoxia4.58E-02
175GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.77E-02
176GO:0042128: nitrate assimilation4.95E-02
RankGO TermAdjusted P value
1GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
4GO:0046577: long-chain-alcohol oxidase activity0.00E+00
5GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0043014: alpha-tubulin binding0.00E+00
8GO:0042903: tubulin deacetylase activity0.00E+00
9GO:0010487: thermospermine synthase activity0.00E+00
10GO:0045435: lycopene epsilon cyclase activity0.00E+00
11GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
12GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.41E-06
13GO:0016149: translation release factor activity, codon specific4.29E-05
14GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor7.62E-05
15GO:0016168: chlorophyll binding9.72E-05
16GO:0005528: FK506 binding1.52E-04
17GO:0051920: peroxiredoxin activity2.33E-04
18GO:0051753: mannan synthase activity2.33E-04
19GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.33E-04
20GO:0016041: glutamate synthase (ferredoxin) activity3.50E-04
21GO:0047259: glucomannan 4-beta-mannosyltransferase activity3.50E-04
22GO:0080132: fatty acid alpha-hydroxylase activity3.50E-04
23GO:0070006: metalloaminopeptidase activity3.50E-04
24GO:0016768: spermine synthase activity3.50E-04
25GO:0016209: antioxidant activity3.80E-04
26GO:0003747: translation release factor activity5.58E-04
27GO:0047746: chlorophyllase activity7.62E-04
28GO:0042389: omega-3 fatty acid desaturase activity7.62E-04
29GO:0010297: heteropolysaccharide binding7.62E-04
30GO:0004617: phosphoglycerate dehydrogenase activity7.62E-04
31GO:0004047: aminomethyltransferase activity7.62E-04
32GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.62E-04
33GO:0000234: phosphoethanolamine N-methyltransferase activity7.62E-04
34GO:0008967: phosphoglycolate phosphatase activity7.62E-04
35GO:0030599: pectinesterase activity8.22E-04
36GO:0004177: aminopeptidase activity8.86E-04
37GO:0004089: carbonate dehydratase activity1.14E-03
38GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.23E-03
39GO:0008864: formyltetrahydrofolate deformylase activity1.23E-03
40GO:0050734: hydroxycinnamoyltransferase activity1.23E-03
41GO:0004148: dihydrolipoyl dehydrogenase activity1.23E-03
42GO:0008289: lipid binding1.25E-03
43GO:0019843: rRNA binding1.26E-03
44GO:0031409: pigment binding1.60E-03
45GO:0009882: blue light photoreceptor activity1.78E-03
46GO:0001872: (1->3)-beta-D-glucan binding1.78E-03
47GO:0048487: beta-tubulin binding1.78E-03
48GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.78E-03
49GO:0004550: nucleoside diphosphate kinase activity1.78E-03
50GO:0005509: calcium ion binding2.21E-03
51GO:0004659: prenyltransferase activity2.38E-03
52GO:1990137: plant seed peroxidase activity2.38E-03
53GO:0043495: protein anchor2.38E-03
54GO:0022891: substrate-specific transmembrane transporter activity2.57E-03
55GO:0051538: 3 iron, 4 sulfur cluster binding3.05E-03
56GO:0016773: phosphotransferase activity, alcohol group as acceptor3.05E-03
57GO:0045330: aspartyl esterase activity3.58E-03
58GO:1990714: hydroxyproline O-galactosyltransferase activity3.76E-03
59GO:0004332: fructose-bisphosphate aldolase activity3.76E-03
60GO:0004130: cytochrome-c peroxidase activity3.76E-03
61GO:0016208: AMP binding3.76E-03
62GO:0016688: L-ascorbate peroxidase activity3.76E-03
63GO:0050662: coenzyme binding3.79E-03
64GO:0016762: xyloglucan:xyloglucosyl transferase activity4.36E-03
65GO:0048038: quinone binding4.36E-03
66GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.54E-03
67GO:0008235: metalloexopeptidase activity5.36E-03
68GO:0019899: enzyme binding5.36E-03
69GO:0004033: aldo-keto reductase (NADP) activity6.22E-03
70GO:0046872: metal ion binding7.10E-03
71GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)7.14E-03
72GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.14E-03
73GO:0016798: hydrolase activity, acting on glycosyl bonds7.43E-03
74GO:0005384: manganese ion transmembrane transporter activity9.10E-03
75GO:0030234: enzyme regulator activity1.01E-02
76GO:0008047: enzyme activator activity1.01E-02
77GO:0044183: protein binding involved in protein folding1.12E-02
78GO:0005089: Rho guanyl-nucleotide exchange factor activity1.12E-02
79GO:0015386: potassium:proton antiporter activity1.12E-02
80GO:0009055: electron carrier activity1.12E-02
81GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.15E-02
82GO:0015095: magnesium ion transmembrane transporter activity1.35E-02
83GO:0031072: heat shock protein binding1.35E-02
84GO:0000155: phosphorelay sensor kinase activity1.35E-02
85GO:0004185: serine-type carboxypeptidase activity1.35E-02
86GO:0005262: calcium channel activity1.35E-02
87GO:0042802: identical protein binding1.35E-02
88GO:0004565: beta-galactosidase activity1.35E-02
89GO:0051537: 2 iron, 2 sulfur cluster binding1.46E-02
90GO:0008083: growth factor activity1.48E-02
91GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.73E-02
92GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.73E-02
93GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.73E-02
94GO:0051536: iron-sulfur cluster binding1.86E-02
95GO:0004857: enzyme inhibitor activity1.86E-02
96GO:0004407: histone deacetylase activity1.86E-02
97GO:0043424: protein histidine kinase binding2.00E-02
98GO:0015079: potassium ion transmembrane transporter activity2.00E-02
99GO:0008324: cation transmembrane transporter activity2.00E-02
100GO:0004176: ATP-dependent peptidase activity2.13E-02
101GO:0033612: receptor serine/threonine kinase binding2.13E-02
102GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.28E-02
103GO:0030570: pectate lyase activity2.42E-02
104GO:0008810: cellulase activity2.42E-02
105GO:0008514: organic anion transmembrane transporter activity2.57E-02
106GO:0003756: protein disulfide isomerase activity2.57E-02
107GO:0051082: unfolded protein binding2.60E-02
108GO:0047134: protein-disulfide reductase activity2.72E-02
109GO:0005102: receptor binding2.72E-02
110GO:0003824: catalytic activity2.80E-02
111GO:0001085: RNA polymerase II transcription factor binding3.04E-02
112GO:0016758: transferase activity, transferring hexosyl groups3.17E-02
113GO:0004791: thioredoxin-disulfide reductase activity3.20E-02
114GO:0010181: FMN binding3.20E-02
115GO:0004872: receptor activity3.36E-02
116GO:0004518: nuclease activity3.70E-02
117GO:0016491: oxidoreductase activity3.78E-02
118GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.87E-02
119GO:0000156: phosphorelay response regulator activity3.87E-02
120GO:0016759: cellulose synthase activity4.04E-02
121GO:0008483: transaminase activity4.22E-02
122GO:0016722: oxidoreductase activity, oxidizing metal ions4.22E-02
123GO:0005200: structural constituent of cytoskeleton4.22E-02
124GO:0008237: metallopeptidase activity4.22E-02
125GO:0016597: amino acid binding4.40E-02
126GO:0015250: water channel activity4.58E-02
127GO:0008375: acetylglucosaminyltransferase activity4.95E-02
128GO:0009931: calcium-dependent protein serine/threonine kinase activity4.95E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009507: chloroplast1.11E-40
3GO:0009535: chloroplast thylakoid membrane2.92E-25
4GO:0009941: chloroplast envelope1.87E-17
5GO:0009543: chloroplast thylakoid lumen1.68E-14
6GO:0009570: chloroplast stroma8.27E-14
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.48E-13
8GO:0009534: chloroplast thylakoid7.38E-12
9GO:0031977: thylakoid lumen2.59E-09
10GO:0048046: apoplast1.06E-08
11GO:0009579: thylakoid1.09E-08
12GO:0009654: photosystem II oxygen evolving complex8.04E-06
13GO:0019898: extrinsic component of membrane3.77E-05
14GO:0030095: chloroplast photosystem II9.31E-05
15GO:0042651: thylakoid membrane1.75E-04
16GO:0031969: chloroplast membrane2.90E-04
17GO:0009344: nitrite reductase complex [NAD(P)H]3.50E-04
18GO:0009782: photosystem I antenna complex3.50E-04
19GO:0031225: anchored component of membrane4.43E-04
20GO:0009523: photosystem II4.76E-04
21GO:0046658: anchored component of plasma membrane6.82E-04
22GO:0010319: stromule7.18E-04
23GO:0000427: plastid-encoded plastid RNA polymerase complex7.62E-04
24GO:0042170: plastid membrane7.62E-04
25GO:0010287: plastoglobule1.16E-03
26GO:0005618: cell wall1.44E-03
27GO:0030076: light-harvesting complex1.44E-03
28GO:0009706: chloroplast inner membrane4.93E-03
29GO:0009533: chloroplast stromal thylakoid5.36E-03
30GO:0000123: histone acetyltransferase complex5.36E-03
31GO:0005811: lipid particle7.14E-03
32GO:0045298: tubulin complex8.10E-03
33GO:0055028: cortical microtubule1.01E-02
34GO:0016324: apical plasma membrane1.01E-02
35GO:0009505: plant-type cell wall1.26E-02
36GO:0009508: plastid chromosome1.35E-02
37GO:0005758: mitochondrial intermembrane space1.86E-02
38GO:0016021: integral component of membrane2.08E-02
39GO:0009532: plastid stroma2.13E-02
40GO:0005874: microtubule2.17E-02
41GO:0005840: ribosome2.59E-02
42GO:0016020: membrane2.96E-02
43GO:0009522: photosystem I3.20E-02
44GO:0000139: Golgi membrane3.96E-02
45GO:0005759: mitochondrial matrix4.08E-02
46GO:0005778: peroxisomal membrane4.22E-02
47GO:0009295: nucleoid4.22E-02
48GO:0030529: intracellular ribonucleoprotein complex4.58E-02
49GO:0005667: transcription factor complex4.95E-02
Gene type



Gene DE type