GO Enrichment Analysis of Co-expressed Genes with
AT4G32980
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 2 | GO:0035970: peptidyl-threonine dephosphorylation | 0.00E+00 |
| 3 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 4 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 5 | GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process | 0.00E+00 |
| 6 | GO:0034337: RNA folding | 0.00E+00 |
| 7 | GO:0002184: cytoplasmic translational termination | 0.00E+00 |
| 8 | GO:0010027: thylakoid membrane organization | 1.20E-07 |
| 9 | GO:0009773: photosynthetic electron transport in photosystem I | 4.91E-06 |
| 10 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 8.64E-06 |
| 11 | GO:0032544: plastid translation | 1.07E-04 |
| 12 | GO:0071482: cellular response to light stimulus | 1.07E-04 |
| 13 | GO:1902025: nitrate import | 1.30E-04 |
| 14 | GO:0000481: maturation of 5S rRNA | 1.30E-04 |
| 15 | GO:0033481: galacturonate biosynthetic process | 1.30E-04 |
| 16 | GO:0090548: response to nitrate starvation | 1.30E-04 |
| 17 | GO:0005991: trehalose metabolic process | 1.30E-04 |
| 18 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.30E-04 |
| 19 | GO:0034765: regulation of ion transmembrane transport | 1.31E-04 |
| 20 | GO:0010311: lateral root formation | 2.00E-04 |
| 21 | GO:0034755: iron ion transmembrane transport | 2.99E-04 |
| 22 | GO:0010115: regulation of abscisic acid biosynthetic process | 2.99E-04 |
| 23 | GO:0001736: establishment of planar polarity | 2.99E-04 |
| 24 | GO:0010270: photosystem II oxygen evolving complex assembly | 2.99E-04 |
| 25 | GO:0009658: chloroplast organization | 4.63E-04 |
| 26 | GO:0090391: granum assembly | 4.92E-04 |
| 27 | GO:0006518: peptide metabolic process | 4.92E-04 |
| 28 | GO:0031022: nuclear migration along microfilament | 4.92E-04 |
| 29 | GO:0009735: response to cytokinin | 4.93E-04 |
| 30 | GO:1901332: negative regulation of lateral root development | 7.04E-04 |
| 31 | GO:2001141: regulation of RNA biosynthetic process | 7.04E-04 |
| 32 | GO:0009152: purine ribonucleotide biosynthetic process | 7.04E-04 |
| 33 | GO:0046653: tetrahydrofolate metabolic process | 7.04E-04 |
| 34 | GO:0015979: photosynthesis | 7.85E-04 |
| 35 | GO:0042335: cuticle development | 8.26E-04 |
| 36 | GO:0042391: regulation of membrane potential | 8.26E-04 |
| 37 | GO:0009958: positive gravitropism | 8.87E-04 |
| 38 | GO:0010182: sugar mediated signaling pathway | 8.87E-04 |
| 39 | GO:0015994: chlorophyll metabolic process | 9.34E-04 |
| 40 | GO:0010021: amylopectin biosynthetic process | 9.34E-04 |
| 41 | GO:0045727: positive regulation of translation | 9.34E-04 |
| 42 | GO:0006564: L-serine biosynthetic process | 1.18E-03 |
| 43 | GO:0009904: chloroplast accumulation movement | 1.18E-03 |
| 44 | GO:0010236: plastoquinone biosynthetic process | 1.18E-03 |
| 45 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.18E-03 |
| 46 | GO:0071805: potassium ion transmembrane transport | 1.38E-03 |
| 47 | GO:0006828: manganese ion transport | 1.45E-03 |
| 48 | GO:0018258: protein O-linked glycosylation via hydroxyproline | 1.45E-03 |
| 49 | GO:0009913: epidermal cell differentiation | 1.45E-03 |
| 50 | GO:0003006: developmental process involved in reproduction | 1.45E-03 |
| 51 | GO:0006561: proline biosynthetic process | 1.45E-03 |
| 52 | GO:0010405: arabinogalactan protein metabolic process | 1.45E-03 |
| 53 | GO:0042549: photosystem II stabilization | 1.45E-03 |
| 54 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.45E-03 |
| 55 | GO:0000470: maturation of LSU-rRNA | 1.45E-03 |
| 56 | GO:1901259: chloroplast rRNA processing | 1.73E-03 |
| 57 | GO:0009082: branched-chain amino acid biosynthetic process | 1.73E-03 |
| 58 | GO:0009099: valine biosynthetic process | 1.73E-03 |
| 59 | GO:0009903: chloroplast avoidance movement | 1.73E-03 |
| 60 | GO:0010189: vitamin E biosynthetic process | 1.73E-03 |
| 61 | GO:0010019: chloroplast-nucleus signaling pathway | 1.73E-03 |
| 62 | GO:0015995: chlorophyll biosynthetic process | 1.81E-03 |
| 63 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 2.04E-03 |
| 64 | GO:0010196: nonphotochemical quenching | 2.04E-03 |
| 65 | GO:0050829: defense response to Gram-negative bacterium | 2.04E-03 |
| 66 | GO:0006400: tRNA modification | 2.04E-03 |
| 67 | GO:0009772: photosynthetic electron transport in photosystem II | 2.04E-03 |
| 68 | GO:0008610: lipid biosynthetic process | 2.36E-03 |
| 69 | GO:0070413: trehalose metabolism in response to stress | 2.36E-03 |
| 70 | GO:0006605: protein targeting | 2.36E-03 |
| 71 | GO:0032508: DNA duplex unwinding | 2.36E-03 |
| 72 | GO:0031540: regulation of anthocyanin biosynthetic process | 2.36E-03 |
| 73 | GO:0016559: peroxisome fission | 2.36E-03 |
| 74 | GO:0048564: photosystem I assembly | 2.36E-03 |
| 75 | GO:0009637: response to blue light | 2.54E-03 |
| 76 | GO:0009097: isoleucine biosynthetic process | 2.69E-03 |
| 77 | GO:0090305: nucleic acid phosphodiester bond hydrolysis | 3.04E-03 |
| 78 | GO:0006754: ATP biosynthetic process | 3.04E-03 |
| 79 | GO:0000373: Group II intron splicing | 3.04E-03 |
| 80 | GO:0010114: response to red light | 3.26E-03 |
| 81 | GO:0009098: leucine biosynthetic process | 3.41E-03 |
| 82 | GO:0010205: photoinhibition | 3.41E-03 |
| 83 | GO:0009688: abscisic acid biosynthetic process | 3.79E-03 |
| 84 | GO:0048829: root cap development | 3.79E-03 |
| 85 | GO:0006816: calcium ion transport | 4.18E-03 |
| 86 | GO:0006879: cellular iron ion homeostasis | 4.18E-03 |
| 87 | GO:0006352: DNA-templated transcription, initiation | 4.18E-03 |
| 88 | GO:0009750: response to fructose | 4.18E-03 |
| 89 | GO:0048765: root hair cell differentiation | 4.18E-03 |
| 90 | GO:0000038: very long-chain fatty acid metabolic process | 4.18E-03 |
| 91 | GO:0006364: rRNA processing | 4.38E-03 |
| 92 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.58E-03 |
| 93 | GO:0010628: positive regulation of gene expression | 5.00E-03 |
| 94 | GO:0010229: inflorescence development | 5.00E-03 |
| 95 | GO:0010143: cutin biosynthetic process | 5.44E-03 |
| 96 | GO:0010020: chloroplast fission | 5.44E-03 |
| 97 | GO:0048467: gynoecium development | 5.44E-03 |
| 98 | GO:0016042: lipid catabolic process | 5.86E-03 |
| 99 | GO:0090351: seedling development | 5.88E-03 |
| 100 | GO:0009225: nucleotide-sugar metabolic process | 5.88E-03 |
| 101 | GO:0006636: unsaturated fatty acid biosynthetic process | 6.34E-03 |
| 102 | GO:0042023: DNA endoreduplication | 6.34E-03 |
| 103 | GO:0007010: cytoskeleton organization | 6.81E-03 |
| 104 | GO:0005992: trehalose biosynthetic process | 6.81E-03 |
| 105 | GO:0009695: jasmonic acid biosynthetic process | 7.30E-03 |
| 106 | GO:0009768: photosynthesis, light harvesting in photosystem I | 7.30E-03 |
| 107 | GO:0008299: isoprenoid biosynthetic process | 7.30E-03 |
| 108 | GO:0031408: oxylipin biosynthetic process | 7.79E-03 |
| 109 | GO:0003333: amino acid transmembrane transport | 7.79E-03 |
| 110 | GO:0016226: iron-sulfur cluster assembly | 8.30E-03 |
| 111 | GO:0040007: growth | 8.82E-03 |
| 112 | GO:0009790: embryo development | 9.09E-03 |
| 113 | GO:0009306: protein secretion | 9.35E-03 |
| 114 | GO:0006633: fatty acid biosynthetic process | 9.79E-03 |
| 115 | GO:0015991: ATP hydrolysis coupled proton transport | 1.04E-02 |
| 116 | GO:0007623: circadian rhythm | 1.08E-02 |
| 117 | GO:0007018: microtubule-based movement | 1.16E-02 |
| 118 | GO:0019252: starch biosynthetic process | 1.22E-02 |
| 119 | GO:0000302: response to reactive oxygen species | 1.28E-02 |
| 120 | GO:0010252: auxin homeostasis | 1.46E-02 |
| 121 | GO:0009817: defense response to fungus, incompatible interaction | 2.00E-02 |
| 122 | GO:0018298: protein-chromophore linkage | 2.00E-02 |
| 123 | GO:0009832: plant-type cell wall biogenesis | 2.07E-02 |
| 124 | GO:0000160: phosphorelay signal transduction system | 2.07E-02 |
| 125 | GO:0010218: response to far red light | 2.15E-02 |
| 126 | GO:0009631: cold acclimation | 2.22E-02 |
| 127 | GO:0006865: amino acid transport | 2.29E-02 |
| 128 | GO:0009853: photorespiration | 2.37E-02 |
| 129 | GO:0034599: cellular response to oxidative stress | 2.45E-02 |
| 130 | GO:0006468: protein phosphorylation | 2.59E-02 |
| 131 | GO:0006839: mitochondrial transport | 2.60E-02 |
| 132 | GO:0008283: cell proliferation | 2.84E-02 |
| 133 | GO:0009926: auxin polar transport | 2.84E-02 |
| 134 | GO:0032259: methylation | 2.93E-02 |
| 135 | GO:0006855: drug transmembrane transport | 3.17E-02 |
| 136 | GO:0006813: potassium ion transport | 3.51E-02 |
| 137 | GO:0009736: cytokinin-activated signaling pathway | 3.51E-02 |
| 138 | GO:0009734: auxin-activated signaling pathway | 4.30E-02 |
| 139 | GO:0009624: response to nematode | 4.51E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 2 | GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity | 0.00E+00 |
| 3 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 4 | GO:0005528: FK506 binding | 1.73E-05 |
| 5 | GO:0005242: inward rectifier potassium channel activity | 4.86E-05 |
| 6 | GO:0045485: omega-6 fatty acid desaturase activity | 1.30E-04 |
| 7 | GO:0004321: fatty-acyl-CoA synthase activity | 1.30E-04 |
| 8 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.30E-04 |
| 9 | GO:0004672: protein kinase activity | 2.49E-04 |
| 10 | GO:0016630: protochlorophyllide reductase activity | 2.99E-04 |
| 11 | GO:0047746: chlorophyllase activity | 2.99E-04 |
| 12 | GO:0004617: phosphoglycerate dehydrogenase activity | 2.99E-04 |
| 13 | GO:0033201: alpha-1,4-glucan synthase activity | 2.99E-04 |
| 14 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 2.99E-04 |
| 15 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.42E-04 |
| 16 | GO:0016788: hydrolase activity, acting on ester bonds | 4.76E-04 |
| 17 | GO:0004373: glycogen (starch) synthase activity | 4.92E-04 |
| 18 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 4.92E-04 |
| 19 | GO:0070402: NADPH binding | 4.92E-04 |
| 20 | GO:0008864: formyltetrahydrofolate deformylase activity | 4.92E-04 |
| 21 | GO:0016851: magnesium chelatase activity | 7.04E-04 |
| 22 | GO:0052656: L-isoleucine transaminase activity | 7.04E-04 |
| 23 | GO:0043023: ribosomal large subunit binding | 7.04E-04 |
| 24 | GO:0052654: L-leucine transaminase activity | 7.04E-04 |
| 25 | GO:0052655: L-valine transaminase activity | 7.04E-04 |
| 26 | GO:0001872: (1->3)-beta-D-glucan binding | 7.04E-04 |
| 27 | GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity | 7.04E-04 |
| 28 | GO:0030551: cyclic nucleotide binding | 8.26E-04 |
| 29 | GO:0016987: sigma factor activity | 9.34E-04 |
| 30 | GO:0010328: auxin influx transmembrane transporter activity | 9.34E-04 |
| 31 | GO:0004084: branched-chain-amino-acid transaminase activity | 9.34E-04 |
| 32 | GO:0009011: starch synthase activity | 9.34E-04 |
| 33 | GO:0050378: UDP-glucuronate 4-epimerase activity | 9.34E-04 |
| 34 | GO:0042277: peptide binding | 9.34E-04 |
| 35 | GO:0004659: prenyltransferase activity | 9.34E-04 |
| 36 | GO:0001053: plastid sigma factor activity | 9.34E-04 |
| 37 | GO:0010011: auxin binding | 9.34E-04 |
| 38 | GO:0019843: rRNA binding | 1.09E-03 |
| 39 | GO:0004518: nuclease activity | 1.15E-03 |
| 40 | GO:0003959: NADPH dehydrogenase activity | 1.18E-03 |
| 41 | GO:0016791: phosphatase activity | 1.30E-03 |
| 42 | GO:0004130: cytochrome-c peroxidase activity | 1.45E-03 |
| 43 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.45E-03 |
| 44 | GO:0016688: L-ascorbate peroxidase activity | 1.45E-03 |
| 45 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.45E-03 |
| 46 | GO:1990714: hydroxyproline O-galactosyltransferase activity | 1.45E-03 |
| 47 | GO:0008017: microtubule binding | 1.72E-03 |
| 48 | GO:0042802: identical protein binding | 2.20E-03 |
| 49 | GO:0043022: ribosome binding | 2.36E-03 |
| 50 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 3.04E-03 |
| 51 | GO:0016207: 4-coumarate-CoA ligase activity | 3.04E-03 |
| 52 | GO:0005381: iron ion transmembrane transporter activity | 3.41E-03 |
| 53 | GO:0005384: manganese ion transmembrane transporter activity | 3.41E-03 |
| 54 | GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity | 3.79E-03 |
| 55 | GO:0015386: potassium:proton antiporter activity | 4.18E-03 |
| 56 | GO:0052689: carboxylic ester hydrolase activity | 4.21E-03 |
| 57 | GO:0004565: beta-galactosidase activity | 5.00E-03 |
| 58 | GO:0004022: alcohol dehydrogenase (NAD) activity | 5.00E-03 |
| 59 | GO:0015095: magnesium ion transmembrane transporter activity | 5.00E-03 |
| 60 | GO:0008266: poly(U) RNA binding | 5.44E-03 |
| 61 | GO:0005515: protein binding | 6.04E-03 |
| 62 | GO:0102336: 3-oxo-arachidoyl-CoA synthase activity | 6.34E-03 |
| 63 | GO:0102337: 3-oxo-cerotoyl-CoA synthase activity | 6.34E-03 |
| 64 | GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity | 6.34E-03 |
| 65 | GO:0031409: pigment binding | 6.34E-03 |
| 66 | GO:0016746: transferase activity, transferring acyl groups | 6.40E-03 |
| 67 | GO:0051536: iron-sulfur cluster binding | 6.81E-03 |
| 68 | GO:0015079: potassium ion transmembrane transporter activity | 7.30E-03 |
| 69 | GO:0003824: catalytic activity | 9.21E-03 |
| 70 | GO:0005249: voltage-gated potassium channel activity | 1.04E-02 |
| 71 | GO:0016887: ATPase activity | 1.06E-02 |
| 72 | GO:0004674: protein serine/threonine kinase activity | 1.10E-02 |
| 73 | GO:0050662: coenzyme binding | 1.16E-02 |
| 74 | GO:0016853: isomerase activity | 1.16E-02 |
| 75 | GO:0016491: oxidoreductase activity | 1.21E-02 |
| 76 | GO:0000156: phosphorelay response regulator activity | 1.40E-02 |
| 77 | GO:0003729: mRNA binding | 1.46E-02 |
| 78 | GO:0016597: amino acid binding | 1.59E-02 |
| 79 | GO:0008168: methyltransferase activity | 1.61E-02 |
| 80 | GO:0016168: chlorophyll binding | 1.73E-02 |
| 81 | GO:0030246: carbohydrate binding | 1.83E-02 |
| 82 | GO:0030247: polysaccharide binding | 1.86E-02 |
| 83 | GO:0004721: phosphoprotein phosphatase activity | 1.86E-02 |
| 84 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 1.93E-02 |
| 85 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.00E-02 |
| 86 | GO:0004222: metalloendopeptidase activity | 2.15E-02 |
| 87 | GO:0030145: manganese ion binding | 2.22E-02 |
| 88 | GO:0005525: GTP binding | 2.36E-02 |
| 89 | GO:0003746: translation elongation factor activity | 2.37E-02 |
| 90 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.60E-02 |
| 91 | GO:0003723: RNA binding | 2.64E-02 |
| 92 | GO:0015293: symporter activity | 3.08E-02 |
| 93 | GO:0051287: NAD binding | 3.25E-02 |
| 94 | GO:0005524: ATP binding | 3.26E-02 |
| 95 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.51E-02 |
| 96 | GO:0003777: microtubule motor activity | 3.77E-02 |
| 97 | GO:0015171: amino acid transmembrane transporter activity | 3.77E-02 |
| 98 | GO:0016874: ligase activity | 4.32E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 6.95E-19 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 1.71E-13 |
| 3 | GO:0009534: chloroplast thylakoid | 3.31E-11 |
| 4 | GO:0009941: chloroplast envelope | 5.16E-09 |
| 5 | GO:0009570: chloroplast stroma | 5.52E-09 |
| 6 | GO:0009579: thylakoid | 1.51E-07 |
| 7 | GO:0009543: chloroplast thylakoid lumen | 4.20E-07 |
| 8 | GO:0009515: granal stacked thylakoid | 1.30E-04 |
| 9 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.31E-04 |
| 10 | GO:0032040: small-subunit processome | 2.53E-04 |
| 11 | GO:0031977: thylakoid lumen | 3.25E-04 |
| 12 | GO:0010007: magnesium chelatase complex | 4.92E-04 |
| 13 | GO:0009654: photosystem II oxygen evolving complex | 5.01E-04 |
| 14 | GO:0031969: chloroplast membrane | 6.43E-04 |
| 15 | GO:0009706: chloroplast inner membrane | 8.26E-04 |
| 16 | GO:0019898: extrinsic component of membrane | 1.02E-03 |
| 17 | GO:0016021: integral component of membrane | 1.43E-03 |
| 18 | GO:0009986: cell surface | 2.04E-03 |
| 19 | GO:0009501: amyloplast | 2.36E-03 |
| 20 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.69E-03 |
| 21 | GO:0030095: chloroplast photosystem II | 5.44E-03 |
| 22 | GO:0030076: light-harvesting complex | 5.88E-03 |
| 23 | GO:0010287: plastoglobule | 7.37E-03 |
| 24 | GO:0005871: kinesin complex | 9.90E-03 |
| 25 | GO:0005886: plasma membrane | 1.05E-02 |
| 26 | GO:0009522: photosystem I | 1.16E-02 |
| 27 | GO:0046658: anchored component of plasma membrane | 1.43E-02 |
| 28 | GO:0032580: Golgi cisterna membrane | 1.46E-02 |
| 29 | GO:0005777: peroxisome | 1.50E-02 |
| 30 | GO:0030529: intracellular ribonucleoprotein complex | 1.66E-02 |
| 31 | GO:0016020: membrane | 1.75E-02 |
| 32 | GO:0005874: microtubule | 2.00E-02 |
| 33 | GO:0009707: chloroplast outer membrane | 2.00E-02 |
| 34 | GO:0005840: ribosome | 3.24E-02 |
| 35 | GO:0009536: plastid | 3.94E-02 |
| 36 | GO:0005887: integral component of plasma membrane | 4.14E-02 |