co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G32570

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0007172: signal complex assembly	0.00E+00
4	GO:1901259: chloroplast rRNA processing	1.69E-05
5	GO:0000476: maturation of 4.5S rRNA	6.74E-05
6	GO:0000967: rRNA 5'-end processing	6.74E-05
7	GO:0043266: regulation of potassium ion transport	6.74E-05
8	GO:2000021: regulation of ion homeostasis	6.74E-05
9	GO:0043007: maintenance of rDNA	6.74E-05
10	GO:0034337: RNA folding	6.74E-05
11	GO:0010541: acropetal auxin transport	1.62E-04
12	GO:0034470: ncRNA processing	1.62E-04
13	GO:0006898: receptor-mediated endocytosis	1.62E-04
14	GO:0016045: detection of bacterium	2.75E-04
15	GO:0010359: regulation of anion channel activity	2.75E-04
16	GO:0045493: xylan catabolic process	2.75E-04
17	GO:0010160: formation of animal organ boundary	2.75E-04
18	GO:0051513: regulation of monopolar cell growth	3.98E-04
19	GO:0010239: chloroplast mRNA processing	3.98E-04
20	GO:0043481: anthocyanin accumulation in tissues in response to UV light	3.98E-04
21	GO:0015995: chlorophyll biosynthetic process	7.86E-04
22	GO:0009913: epidermal cell differentiation	8.23E-04
23	GO:0060918: auxin transport	8.23E-04
24	GO:0010304: PSII associated light-harvesting complex II catabolic process	8.23E-04
25	GO:0009942: longitudinal axis specification	9.79E-04
26	GO:0050829: defense response to Gram-negative bacterium	1.14E-03
27	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.28E-03
28	GO:0009926: auxin polar transport	1.38E-03
29	GO:0007389: pattern specification process	1.50E-03
30	GO:0015996: chlorophyll catabolic process	1.50E-03
31	GO:0010206: photosystem II repair	1.69E-03
32	GO:0006783: heme biosynthetic process	1.69E-03
33	GO:0009245: lipid A biosynthetic process	1.69E-03
34	GO:0009664: plant-type cell wall organization	1.72E-03
35	GO:0009638: phototropism	1.89E-03
36	GO:0006782: protoporphyrinogen IX biosynthetic process	2.10E-03
37	GO:0052544: defense response by callose deposition in cell wall	2.31E-03
38	GO:0008361: regulation of cell size	2.53E-03
39	GO:0030048: actin filament-based movement	2.76E-03
40	GO:0010588: cotyledon vascular tissue pattern formation	2.76E-03
41	GO:0009785: blue light signaling pathway	2.76E-03
42	GO:0010207: photosystem II assembly	2.99E-03
43	GO:0010540: basipetal auxin transport	2.99E-03
44	GO:0009934: regulation of meristem structural organization	2.99E-03
45	GO:0006636: unsaturated fatty acid biosynthetic process	3.48E-03
46	GO:0007017: microtubule-based process	3.99E-03
47	GO:0006633: fatty acid biosynthetic process	4.08E-03
48	GO:0009416: response to light stimulus	4.12E-03
49	GO:0007623: circadian rhythm	4.48E-03
50	GO:0006468: protein phosphorylation	4.62E-03
51	GO:0071369: cellular response to ethylene stimulus	4.81E-03
52	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.81E-03
53	GO:0048443: stamen development	5.09E-03
54	GO:0007166: cell surface receptor signaling pathway	5.11E-03
55	GO:0080022: primary root development	5.68E-03
56	GO:0010087: phloem or xylem histogenesis	5.68E-03
57	GO:0042335: cuticle development	5.68E-03
58	GO:0009958: positive gravitropism	5.98E-03
59	GO:0010305: leaf vascular tissue pattern formation	5.98E-03
60	GO:0048825: cotyledon development	6.60E-03
61	GO:0010583: response to cyclopentenone	7.24E-03
62	GO:0016032: viral process	7.24E-03
63	GO:0009639: response to red or far red light	7.90E-03
64	GO:0009828: plant-type cell wall loosening	7.90E-03
65	GO:0010252: auxin homeostasis	7.90E-03
66	GO:0071805: potassium ion transmembrane transport	8.24E-03
67	GO:0051607: defense response to virus	8.59E-03
68	GO:0009627: systemic acquired resistance	9.65E-03
69	GO:0010411: xyloglucan metabolic process	1.00E-02
70	GO:0010218: response to far red light	1.15E-02
71	GO:0048527: lateral root development	1.19E-02
72	GO:0009631: cold acclimation	1.19E-02
73	GO:0016051: carbohydrate biosynthetic process	1.27E-02
74	GO:0009637: response to blue light	1.27E-02
75	GO:0048364: root development	1.32E-02
76	GO:0009640: photomorphogenesis	1.52E-02
77	GO:0009734: auxin-activated signaling pathway	1.79E-02
78	GO:0042538: hyperosmotic salinity response	1.79E-02
79	GO:0006364: rRNA processing	1.88E-02
80	GO:0006813: potassium ion transport	1.88E-02
81	GO:0051603: proteolysis involved in cellular protein catabolic process	1.93E-02
82	GO:0048367: shoot system development	2.17E-02
83	GO:0042545: cell wall modification	2.37E-02
84	GO:0006396: RNA processing	2.47E-02
85	GO:0055085: transmembrane transport	2.86E-02
86	GO:0009845: seed germination	3.00E-02
87	GO:0045490: pectin catabolic process	3.57E-02
88	GO:0009451: RNA modification	3.63E-02
89	GO:0008380: RNA splicing	4.04E-02
90	GO:0071555: cell wall organization	4.55E-02
91	GO:0009826: unidimensional cell growth	4.73E-02
92	GO:0009658: chloroplast organization	4.86E-02
93	GO:0042254: ribosome biogenesis	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0034256: chlorophyll(ide) b reductase activity	6.74E-05
5	GO:0004853: uroporphyrinogen decarboxylase activity	6.74E-05
6	GO:0010329: auxin efflux transmembrane transporter activity	1.15E-04
7	GO:0004312: fatty acid synthase activity	1.62E-04
8	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	2.75E-04
9	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	5.01E-04
10	GO:0009044: xylan 1,4-beta-xylosidase activity	5.32E-04
11	GO:0046556: alpha-L-arabinofuranosidase activity	5.32E-04
12	GO:0031177: phosphopantetheine binding	8.23E-04
13	GO:0005096: GTPase activator activity	9.07E-04
14	GO:0000035: acyl binding	9.79E-04
15	GO:0004525: ribonuclease III activity	1.32E-03
16	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.32E-03
17	GO:0009672: auxin:proton symporter activity	1.89E-03
18	GO:0015020: glucuronosyltransferase activity	2.10E-03
19	GO:0047372: acylglycerol lipase activity	2.31E-03
20	GO:0008794: arsenate reductase (glutaredoxin) activity	2.31E-03
21	GO:0004521: endoribonuclease activity	2.53E-03
22	GO:0016301: kinase activity	2.56E-03
23	GO:0031072: heat shock protein binding	2.76E-03
24	GO:0009982: pseudouridine synthase activity	2.76E-03
25	GO:0003774: motor activity	2.99E-03
26	GO:0015079: potassium ion transmembrane transporter activity	3.99E-03
27	GO:0033612: receptor serine/threonine kinase binding	4.26E-03
28	GO:0003756: protein disulfide isomerase activity	5.09E-03
29	GO:0004518: nuclease activity	7.24E-03
30	GO:0005200: structural constituent of cytoskeleton	8.24E-03
31	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	8.24E-03
32	GO:0008375: acetylglucosaminyltransferase activity	9.65E-03
33	GO:0004871: signal transducer activity	1.08E-02
34	GO:0003746: translation elongation factor activity	1.27E-02
35	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.35E-02
36	GO:0003723: RNA binding	1.51E-02
37	GO:0004185: serine-type carboxypeptidase activity	1.52E-02
38	GO:0051537: 2 iron, 2 sulfur cluster binding	1.61E-02
39	GO:0043621: protein self-association	1.61E-02
40	GO:0008289: lipid binding	1.77E-02
41	GO:0003777: microtubule motor activity	2.02E-02
42	GO:0045330: aspartyl esterase activity	2.02E-02
43	GO:0005515: protein binding	2.18E-02
44	GO:0004650: polygalacturonase activity	2.26E-02
45	GO:0030599: pectinesterase activity	2.31E-02
46	GO:0004674: protein serine/threonine kinase activity	2.32E-02
47	GO:0051082: unfolded protein binding	2.42E-02
48	GO:0015035: protein disulfide oxidoreductase activity	2.47E-02
49	GO:0016787: hydrolase activity	2.64E-02
50	GO:0019843: rRNA binding	2.84E-02
51	GO:0016829: lyase activity	3.00E-02
52	GO:0046910: pectinesterase inhibitor activity	3.39E-02
53	GO:0008017: microtubule binding	3.68E-02
54	GO:0005525: GTP binding	3.71E-02
55	GO:0003743: translation initiation factor activity	3.98E-02
56	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.23E-02
57	GO:0046982: protein heterodimerization activity	4.80E-02
58	GO:0016788: hydrolase activity, acting on ester bonds	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
2	GO:0009507: chloroplast	2.15E-07
3	GO:0009570: chloroplast stroma	5.45E-05
4	GO:0009941: chloroplast envelope	1.02E-04
5	GO:0009534: chloroplast thylakoid	1.55E-04
6	GO:0009531: secondary cell wall	3.98E-04
7	GO:0042644: chloroplast nucleoid	1.69E-03
8	GO:0045298: tubulin complex	1.69E-03
9	GO:0009535: chloroplast thylakoid membrane	1.71E-03
10	GO:0016459: myosin complex	2.10E-03
11	GO:0055028: cortical microtubule	2.10E-03
12	GO:0032040: small-subunit processome	2.53E-03
13	GO:0009508: plastid chromosome	2.76E-03
14	GO:0016602: CCAAT-binding factor complex	2.76E-03
15	GO:0009522: photosystem I	6.28E-03
16	GO:0016020: membrane	6.67E-03
17	GO:0071944: cell periphery	7.57E-03
18	GO:0009295: nucleoid	8.24E-03
19	GO:0005874: microtubule	8.28E-03
20	GO:0030529: intracellular ribonucleoprotein complex	8.93E-03
21	GO:0005886: plasma membrane	1.09E-02
22	GO:0000325: plant-type vacuole	1.19E-02
23	GO:0009505: plant-type cell wall	1.34E-02
24	GO:0031977: thylakoid lumen	1.44E-02
25	GO:0005618: cell wall	1.68E-02
26	GO:0010008: endosome membrane	2.17E-02
27	GO:0009706: chloroplast inner membrane	2.42E-02
28	GO:0009543: chloroplast thylakoid lumen	2.84E-02
29	GO:0009705: plant-type vacuole membrane	3.57E-02
30	GO:0005768: endosome	4.10E-02
31	GO:0005840: ribosome	4.76E-02