co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009991: response to extracellular stimulus	0.00E+00
2	GO:0006593: ornithine catabolic process	0.00E+00
3	GO:0032780: negative regulation of ATPase activity	0.00E+00
4	GO:0006482: protein demethylation	0.00E+00
5	GO:0043048: dolichyl monophosphate biosynthetic process	0.00E+00
6	GO:0030149: sphingolipid catabolic process	0.00E+00
7	GO:2000541: positive regulation of protein geranylgeranylation	0.00E+00
8	GO:0045185: maintenance of protein location	0.00E+00
9	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
10	GO:0006631: fatty acid metabolic process	3.33E-06
11	GO:0001676: long-chain fatty acid metabolic process	1.50E-05
12	GO:0006468: protein phosphorylation	8.12E-05
13	GO:0009819: drought recovery	1.56E-04
14	GO:0071586: CAAX-box protein processing	1.93E-04
15	GO:0019628: urate catabolic process	1.93E-04
16	GO:0006422: aspartyl-tRNA aminoacylation	1.93E-04
17	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	1.93E-04
18	GO:0080173: male-female gamete recognition during double fertilization	1.93E-04
19	GO:0033306: phytol metabolic process	1.93E-04
20	GO:0010482: regulation of epidermal cell division	1.93E-04
21	GO:0003400: regulation of COPII vesicle coating	1.93E-04
22	GO:0034214: protein hexamerization	1.93E-04
23	GO:0019544: arginine catabolic process to glutamate	1.93E-04
24	GO:0006144: purine nucleobase metabolic process	1.93E-04
25	GO:0080120: CAAX-box protein maturation	1.93E-04
26	GO:0046686: response to cadmium ion	2.85E-04
27	GO:0046777: protein autophosphorylation	3.14E-04
28	GO:0055114: oxidation-reduction process	3.95E-04
29	GO:0015824: proline transport	4.33E-04
30	GO:0019521: D-gluconate metabolic process	4.33E-04
31	GO:1904961: quiescent center organization	4.33E-04
32	GO:0019752: carboxylic acid metabolic process	4.33E-04
33	GO:0051258: protein polymerization	4.33E-04
34	GO:0019441: tryptophan catabolic process to kynurenine	4.33E-04
35	GO:0097054: L-glutamate biosynthetic process	4.33E-04
36	GO:0031648: protein destabilization	4.33E-04
37	GO:0015914: phospholipid transport	4.33E-04
38	GO:0015031: protein transport	6.60E-04
39	GO:0010447: response to acidic pH	7.06E-04
40	GO:0048281: inflorescence morphogenesis	7.06E-04
41	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	7.06E-04
42	GO:0051646: mitochondrion localization	7.06E-04
43	GO:0010359: regulation of anion channel activity	7.06E-04
44	GO:0061158: 3'-UTR-mediated mRNA destabilization	7.06E-04
45	GO:0072661: protein targeting to plasma membrane	7.06E-04
46	GO:0051707: response to other organism	7.33E-04
47	GO:0031408: oxylipin biosynthetic process	9.35E-04
48	GO:0006537: glutamate biosynthetic process	1.01E-03
49	GO:0009306: protein secretion	1.20E-03
50	GO:0019676: ammonia assimilation cycle	1.34E-03
51	GO:0010483: pollen tube reception	1.34E-03
52	GO:0051567: histone H3-K9 methylation	1.34E-03
53	GO:0006542: glutamine biosynthetic process	1.34E-03
54	GO:0009738: abscisic acid-activated signaling pathway	1.45E-03
55	GO:0018344: protein geranylgeranylation	1.70E-03
56	GO:0070814: hydrogen sulfide biosynthetic process	2.10E-03
57	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	2.10E-03
58	GO:1902456: regulation of stomatal opening	2.10E-03
59	GO:0009228: thiamine biosynthetic process	2.10E-03
60	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.10E-03
61	GO:0006561: proline biosynthetic process	2.10E-03
62	GO:2000067: regulation of root morphogenesis	2.52E-03
63	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.52E-03
64	GO:0000911: cytokinesis by cell plate formation	2.52E-03
65	GO:0009612: response to mechanical stimulus	2.52E-03
66	GO:0010555: response to mannitol	2.52E-03
67	GO:0009816: defense response to bacterium, incompatible interaction	2.82E-03
68	GO:0043090: amino acid import	2.96E-03
69	GO:0070370: cellular heat acclimation	2.96E-03
70	GO:0050790: regulation of catalytic activity	2.96E-03
71	GO:0010044: response to aluminum ion	2.96E-03
72	GO:0010150: leaf senescence	3.29E-03
73	GO:0048767: root hair elongation	3.65E-03
74	GO:0009699: phenylpropanoid biosynthetic process	3.93E-03
75	GO:0007186: G-protein coupled receptor signaling pathway	3.93E-03
76	GO:0009657: plastid organization	3.93E-03
77	GO:0030968: endoplasmic reticulum unfolded protein response	3.93E-03
78	GO:0009617: response to bacterium	4.12E-03
79	GO:0006865: amino acid transport	4.20E-03
80	GO:0046685: response to arsenic-containing substance	4.44E-03
81	GO:0009051: pentose-phosphate shunt, oxidative branch	4.44E-03
82	GO:0006098: pentose-phosphate shunt	4.44E-03
83	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.44E-03
84	GO:0019432: triglyceride biosynthetic process	4.44E-03
85	GO:0030042: actin filament depolymerization	4.99E-03
86	GO:2000280: regulation of root development	4.99E-03
87	GO:0048268: clathrin coat assembly	4.99E-03
88	GO:0010449: root meristem growth	4.99E-03
89	GO:0009651: response to salt stress	5.47E-03
90	GO:0006896: Golgi to vacuole transport	5.55E-03
91	GO:0019538: protein metabolic process	5.55E-03
92	GO:0000103: sulfate assimilation	5.55E-03
93	GO:0043069: negative regulation of programmed cell death	5.55E-03
94	GO:0009698: phenylpropanoid metabolic process	6.13E-03
95	GO:0072593: reactive oxygen species metabolic process	6.13E-03
96	GO:0009750: response to fructose	6.13E-03
97	GO:0048765: root hair cell differentiation	6.13E-03
98	GO:0009737: response to abscisic acid	6.46E-03
99	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.73E-03
100	GO:0006006: glucose metabolic process	7.36E-03
101	GO:0009266: response to temperature stimulus	8.01E-03
102	GO:0034605: cellular response to heat	8.01E-03
103	GO:0007034: vacuolar transport	8.01E-03
104	GO:0009887: animal organ morphogenesis	8.01E-03
105	GO:0007031: peroxisome organization	8.67E-03
106	GO:0070588: calcium ion transmembrane transport	8.67E-03
107	GO:0045454: cell redox homeostasis	9.48E-03
108	GO:2000377: regulation of reactive oxygen species metabolic process	1.01E-02
109	GO:0010026: trichome differentiation	1.08E-02
110	GO:0009695: jasmonic acid biosynthetic process	1.08E-02
111	GO:0018105: peptidyl-serine phosphorylation	1.12E-02
112	GO:0016226: iron-sulfur cluster assembly	1.23E-02
113	GO:0006730: one-carbon metabolic process	1.23E-02
114	GO:0030433: ubiquitin-dependent ERAD pathway	1.23E-02
115	GO:0031348: negative regulation of defense response	1.23E-02
116	GO:0006817: phosphate ion transport	1.39E-02
117	GO:0016117: carotenoid biosynthetic process	1.47E-02
118	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.47E-02
119	GO:0006520: cellular amino acid metabolic process	1.63E-02
120	GO:0010154: fruit development	1.63E-02
121	GO:0006633: fatty acid biosynthetic process	1.72E-02
122	GO:0048544: recognition of pollen	1.72E-02
123	GO:0061025: membrane fusion	1.72E-02
124	GO:0006623: protein targeting to vacuole	1.81E-02
125	GO:0009749: response to glucose	1.81E-02
126	GO:0008654: phospholipid biosynthetic process	1.81E-02
127	GO:0042742: defense response to bacterium	1.86E-02
128	GO:0071554: cell wall organization or biogenesis	1.90E-02
129	GO:0000302: response to reactive oxygen species	1.90E-02
130	GO:0010193: response to ozone	1.90E-02
131	GO:0007264: small GTPase mediated signal transduction	1.99E-02
132	GO:0030163: protein catabolic process	2.08E-02
133	GO:0007166: cell surface receptor signaling pathway	2.16E-02
134	GO:0006914: autophagy	2.18E-02
135	GO:0006904: vesicle docking involved in exocytosis	2.27E-02
136	GO:0051607: defense response to virus	2.37E-02
137	GO:0000910: cytokinesis	2.37E-02
138	GO:0001666: response to hypoxia	2.47E-02
139	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.57E-02
140	GO:0042128: nitrate assimilation	2.67E-02
141	GO:0006906: vesicle fusion	2.67E-02
142	GO:0006888: ER to Golgi vesicle-mediated transport	2.77E-02
143	GO:0009817: defense response to fungus, incompatible interaction	2.98E-02
144	GO:0006970: response to osmotic stress	3.15E-02
145	GO:0006499: N-terminal protein myristoylation	3.20E-02
146	GO:0009407: toxin catabolic process	3.20E-02
147	GO:0007049: cell cycle	3.26E-02
148	GO:0048527: lateral root development	3.31E-02
149	GO:0010119: regulation of stomatal movement	3.31E-02
150	GO:0010043: response to zinc ion	3.31E-02
151	GO:0009867: jasmonic acid mediated signaling pathway	3.53E-02
152	GO:0045087: innate immune response	3.53E-02
153	GO:0080167: response to karrikin	3.62E-02
154	GO:0006511: ubiquitin-dependent protein catabolic process	3.73E-02
155	GO:0016192: vesicle-mediated transport	3.80E-02
156	GO:0006897: endocytosis	3.99E-02
157	GO:0006887: exocytosis	3.99E-02
158	GO:0009744: response to sucrose	4.23E-02
159	GO:0009644: response to high light intensity	4.47E-02
160	GO:0031347: regulation of defense response	4.84E-02
161	GO:0009846: pollen germination	4.96E-02
162	GO:0042538: hyperosmotic salinity response	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0004168: dolichol kinase activity	0.00E+00
2	GO:0004587: ornithine-oxo-acid transaminase activity	0.00E+00
3	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
4	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
5	GO:0009940: amino-terminal vacuolar sorting propeptide binding	0.00E+00
6	GO:0015930: glutamate synthase activity	0.00E+00
7	GO:0005092: GDP-dissociation inhibitor activity	0.00E+00
8	GO:0004846: urate oxidase activity	0.00E+00
9	GO:0051723: protein methylesterase activity	0.00E+00
10	GO:0042030: ATPase inhibitor activity	0.00E+00
11	GO:0004674: protein serine/threonine kinase activity	2.97E-07
12	GO:0102391: decanoate--CoA ligase activity	1.05E-06
13	GO:0004467: long-chain fatty acid-CoA ligase activity	1.72E-06
14	GO:0005524: ATP binding	2.24E-06
15	GO:0004029: aldehyde dehydrogenase (NAD) activity	6.61E-05
16	GO:0016301: kinase activity	7.05E-05
17	GO:0051920: peroxiredoxin activity	9.18E-05
18	GO:0016209: antioxidant activity	1.56E-04
19	GO:0004815: aspartate-tRNA ligase activity	1.93E-04
20	GO:0008802: betaine-aldehyde dehydrogenase activity	1.93E-04
21	GO:0005090: Sar guanyl-nucleotide exchange factor activity	1.93E-04
22	GO:0010209: vacuolar sorting signal binding	1.93E-04
23	GO:0004321: fatty-acyl-CoA synthase activity	1.93E-04
24	GO:0016041: glutamate synthase (ferredoxin) activity	1.93E-04
25	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	2.82E-04
26	GO:0003958: NADPH-hemoprotein reductase activity	4.33E-04
27	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	4.33E-04
28	GO:0019172: glyoxalase III activity	4.33E-04
29	GO:0004061: arylformamidase activity	4.33E-04
30	GO:0001664: G-protein coupled receptor binding	7.06E-04
31	GO:0005093: Rab GDP-dissociation inhibitor activity	7.06E-04
32	GO:0031683: G-protein beta/gamma-subunit complex binding	7.06E-04
33	GO:0015193: L-proline transmembrane transporter activity	7.06E-04
34	GO:0004781: sulfate adenylyltransferase (ATP) activity	7.06E-04
35	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.34E-03
36	GO:0003995: acyl-CoA dehydrogenase activity	1.34E-03
37	GO:0009916: alternative oxidase activity	1.34E-03
38	GO:0017137: Rab GTPase binding	1.70E-03
39	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.70E-03
40	GO:0051538: 3 iron, 4 sulfur cluster binding	1.70E-03
41	GO:0004356: glutamate-ammonia ligase activity	1.70E-03
42	GO:0004605: phosphatidate cytidylyltransferase activity	2.10E-03
43	GO:0036402: proteasome-activating ATPase activity	2.10E-03
44	GO:0051020: GTPase binding	2.52E-03
45	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.52E-03
46	GO:0004602: glutathione peroxidase activity	2.52E-03
47	GO:0004144: diacylglycerol O-acyltransferase activity	2.52E-03
48	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	2.52E-03
49	GO:0016831: carboxy-lyase activity	2.96E-03
50	GO:0102425: myricetin 3-O-glucosyltransferase activity	2.96E-03
51	GO:0102360: daphnetin 3-O-glucosyltransferase activity	2.96E-03
52	GO:0043295: glutathione binding	2.96E-03
53	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.98E-03
54	GO:0004672: protein kinase activity	3.11E-03
55	GO:0004683: calmodulin-dependent protein kinase activity	3.14E-03
56	GO:0047893: flavonol 3-O-glucosyltransferase activity	3.43E-03
57	GO:0004033: aldo-keto reductase (NADP) activity	3.43E-03
58	GO:0005096: GTPase activator activity	3.65E-03
59	GO:0016207: 4-coumarate-CoA ligase activity	4.44E-03
60	GO:0005509: calcium ion binding	4.62E-03
61	GO:0004743: pyruvate kinase activity	4.99E-03
62	GO:0047617: acyl-CoA hydrolase activity	4.99E-03
63	GO:0030955: potassium ion binding	4.99E-03
64	GO:0005545: 1-phosphatidylinositol binding	5.55E-03
65	GO:0005484: SNAP receptor activity	5.66E-03
66	GO:0004601: peroxidase activity	5.73E-03
67	GO:0005543: phospholipid binding	6.13E-03
68	GO:0008794: arsenate reductase (glutaredoxin) activity	6.13E-03
69	GO:0003824: catalytic activity	6.26E-03
70	GO:0015293: symporter activity	6.36E-03
71	GO:0015114: phosphate ion transmembrane transporter activity	7.36E-03
72	GO:0005388: calcium-transporting ATPase activity	7.36E-03
73	GO:0005315: inorganic phosphate transmembrane transporter activity	7.36E-03
74	GO:0004175: endopeptidase activity	8.01E-03
75	GO:0015171: amino acid transmembrane transporter activity	8.45E-03
76	GO:0017025: TBP-class protein binding	8.67E-03
77	GO:0003954: NADH dehydrogenase activity	1.01E-02
78	GO:0043130: ubiquitin binding	1.01E-02
79	GO:0051536: iron-sulfur cluster binding	1.01E-02
80	GO:0008408: 3'-5' exonuclease activity	1.15E-02
81	GO:0035251: UDP-glucosyltransferase activity	1.15E-02
82	GO:0005516: calmodulin binding	1.19E-02
83	GO:0003924: GTPase activity	1.24E-02
84	GO:0022891: substrate-specific transmembrane transporter activity	1.31E-02
85	GO:0003727: single-stranded RNA binding	1.39E-02
86	GO:0030170: pyridoxal phosphate binding	1.52E-02
87	GO:0030276: clathrin binding	1.63E-02
88	GO:0008080: N-acetyltransferase activity	1.63E-02
89	GO:0010181: FMN binding	1.72E-02
90	GO:0004197: cysteine-type endopeptidase activity	1.99E-02
91	GO:0016887: ATPase activity	2.15E-02
92	GO:0016413: O-acetyltransferase activity	2.37E-02
93	GO:0042802: identical protein binding	2.40E-02
94	GO:0051213: dioxygenase activity	2.47E-02
95	GO:0030247: polysaccharide binding	2.77E-02
96	GO:0016491: oxidoreductase activity	2.80E-02
97	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.88E-02
98	GO:0046872: metal ion binding	3.09E-02
99	GO:0004222: metalloendopeptidase activity	3.20E-02
100	GO:0003993: acid phosphatase activity	3.64E-02
101	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.76E-02
102	GO:0000149: SNARE binding	3.76E-02
103	GO:0050661: NADP binding	3.87E-02
104	GO:0005507: copper ion binding	3.96E-02
105	GO:0004364: glutathione transferase activity	4.11E-02
106	GO:0004871: signal transducer activity	4.53E-02
107	GO:0005198: structural molecule activity	4.59E-02
108	GO:0005525: GTP binding	4.72E-02
109	GO:0005515: protein binding	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0046862: chromoplast membrane	0.00E+00
3	GO:0005886: plasma membrane	1.87E-12
4	GO:0005829: cytosol	4.31E-06
5	GO:0005777: peroxisome	1.31E-05
6	GO:0030176: integral component of endoplasmic reticulum membrane	2.98E-05
7	GO:0031901: early endosome membrane	2.36E-04
8	GO:0031304: intrinsic component of mitochondrial inner membrane	4.33E-04
9	GO:0005901: caveola	4.33E-04
10	GO:0005783: endoplasmic reticulum	5.61E-04
11	GO:0030139: endocytic vesicle	7.06E-04
12	GO:0032585: multivesicular body membrane	1.01E-03
13	GO:0005968: Rab-protein geranylgeranyltransferase complex	1.01E-03
14	GO:0000502: proteasome complex	1.06E-03
15	GO:0005737: cytoplasm	1.71E-03
16	GO:0009504: cell plate	1.73E-03
17	GO:0005773: vacuole	2.00E-03
18	GO:0031597: cytosolic proteasome complex	2.52E-03
19	GO:0031595: nuclear proteasome complex	2.96E-03
20	GO:0030665: clathrin-coated vesicle membrane	4.99E-03
21	GO:0008540: proteasome regulatory particle, base subcomplex	4.99E-03
22	GO:0031902: late endosome membrane	5.22E-03
23	GO:0017119: Golgi transport complex	5.55E-03
24	GO:0008541: proteasome regulatory particle, lid subcomplex	6.13E-03
25	GO:0005764: lysosome	8.01E-03
26	GO:0005794: Golgi apparatus	8.70E-03
27	GO:0005769: early endosome	9.35E-03
28	GO:0005834: heterotrimeric G-protein complex	9.62E-03
29	GO:0070469: respiratory chain	1.08E-02
30	GO:0005905: clathrin-coated pit	1.15E-02
31	GO:0015629: actin cytoskeleton	1.31E-02
32	GO:0005623: cell	1.40E-02
33	GO:0009524: phragmoplast	1.44E-02
34	GO:0030136: clathrin-coated vesicle	1.47E-02
35	GO:0005622: intracellular	1.53E-02
36	GO:0005770: late endosome	1.63E-02
37	GO:0019898: extrinsic component of membrane	1.81E-02
38	GO:0005887: integral component of plasma membrane	1.82E-02
39	GO:0009506: plasmodesma	1.98E-02
40	GO:0005778: peroxisomal membrane	2.27E-02
41	GO:0016020: membrane	2.57E-02
42	GO:0005789: endoplasmic reticulum membrane	3.48E-02
43	GO:0005819: spindle	3.76E-02
44	GO:0031201: SNARE complex	3.99E-02
45	GO:0005856: cytoskeleton	4.59E-02
46	GO:0048046: apoplast	4.77E-02