co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31810

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000494: box C/D snoRNA 3'-end processing	0.00E+00
2	GO:0015690: aluminum cation transport	0.00E+00
3	GO:1990258: histone glutamine methylation	0.00E+00
4	GO:0031167: rRNA methylation	1.17E-06
5	GO:0001510: RNA methylation	6.65E-06
6	GO:0006364: rRNA processing	1.85E-05
7	GO:0055081: anion homeostasis	2.19E-05
8	GO:0009700: indole phytoalexin biosynthetic process	2.19E-05
9	GO:0009625: response to insect	5.84E-05
10	GO:0008033: tRNA processing	7.73E-05
11	GO:0009646: response to absence of light	9.13E-05
12	GO:0009855: determination of bilateral symmetry	1.49E-04
13	GO:1901141: regulation of lignin biosynthetic process	2.04E-04
14	GO:0042273: ribosomal large subunit biogenesis	2.04E-04
15	GO:0009697: salicylic acid biosynthetic process	2.62E-04
16	GO:0031365: N-terminal protein amino acid modification	2.62E-04
17	GO:0016554: cytidine to uridine editing	3.24E-04
18	GO:0009423: chorismate biosynthetic process	3.89E-04
19	GO:0080186: developmental vegetative growth	4.56E-04
20	GO:0050821: protein stabilization	5.25E-04
21	GO:0010120: camalexin biosynthetic process	5.98E-04
22	GO:0010112: regulation of systemic acquired resistance	6.71E-04
23	GO:0043069: negative regulation of programmed cell death	8.27E-04
24	GO:0010162: seed dormancy process	8.27E-04
25	GO:0009073: aromatic amino acid family biosynthetic process	9.07E-04
26	GO:0016485: protein processing	9.07E-04
27	GO:0010582: floral meristem determinacy	9.89E-04
28	GO:0050832: defense response to fungus	1.18E-03
29	GO:0070588: calcium ion transmembrane transport	1.25E-03
30	GO:0009617: response to bacterium	1.30E-03
31	GO:0000162: tryptophan biosynthetic process	1.34E-03
32	GO:0009944: polarity specification of adaxial/abaxial axis	1.43E-03
33	GO:0000027: ribosomal large subunit assembly	1.43E-03
34	GO:0006979: response to oxidative stress	1.62E-03
35	GO:0016226: iron-sulfur cluster assembly	1.73E-03
36	GO:0031348: negative regulation of defense response	1.73E-03
37	GO:0009294: DNA mediated transformation	1.83E-03
38	GO:0070417: cellular response to cold	2.04E-03
39	GO:0042631: cellular response to water deprivation	2.15E-03
40	GO:0042391: regulation of membrane potential	2.15E-03
41	GO:0010197: polar nucleus fusion	2.26E-03
42	GO:0009960: endosperm development	2.26E-03
43	GO:0000302: response to reactive oxygen species	2.61E-03
44	GO:0080156: mitochondrial mRNA modification	2.61E-03
45	GO:0032502: developmental process	2.73E-03
46	GO:0009615: response to virus	3.34E-03
47	GO:0009407: toxin catabolic process	4.28E-03
48	GO:0045087: innate immune response	4.70E-03
49	GO:0009636: response to toxic substance	6.07E-03
50	GO:0006855: drug transmembrane transport	6.23E-03
51	GO:0010224: response to UV-B	7.05E-03
52	GO:0016569: covalent chromatin modification	8.43E-03
53	GO:0009553: embryo sac development	8.61E-03
54	GO:0009624: response to nematode	8.79E-03
55	GO:0009414: response to water deprivation	1.05E-02
56	GO:0042742: defense response to bacterium	1.08E-02
57	GO:0009845: seed germination	1.09E-02
58	GO:0009790: embryo development	1.15E-02
59	GO:0010150: leaf senescence	1.29E-02
60	GO:0006412: translation	1.30E-02
61	GO:0009451: RNA modification	1.31E-02
62	GO:0006952: defense response	1.41E-02
63	GO:0046686: response to cadmium ion	1.69E-02
64	GO:0042254: ribosome biogenesis	1.78E-02
65	GO:0009723: response to ethylene	1.95E-02
66	GO:0080167: response to karrikin	2.05E-02
67	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.10E-02
68	GO:0046777: protein autophosphorylation	2.15E-02
69	GO:0009737: response to abscisic acid	2.31E-02
70	GO:0009793: embryo development ending in seed dormancy	2.51E-02
71	GO:0009751: response to salicylic acid	2.68E-02
72	GO:0009408: response to heat	2.71E-02
73	GO:0009416: response to light stimulus	4.07E-02
74	GO:0009611: response to wounding	4.14E-02
75	GO:0006457: protein folding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:1990259: histone-glutamine methyltransferase activity	0.00E+00
2	GO:0010298: dihydrocamalexic acid decarboxylase activity	0.00E+00
3	GO:0004107: chorismate synthase activity	0.00E+00
4	GO:0008649: rRNA methyltransferase activity	1.42E-07
5	GO:0030515: snoRNA binding	3.78E-06
6	GO:0004591: oxoglutarate dehydrogenase (succinyl-transferring) activity	2.19E-05
7	GO:0004048: anthranilate phosphoribosyltransferase activity	2.19E-05
8	GO:0050897: cobalt ion binding	2.46E-04
9	GO:0030976: thiamine pyrophosphate binding	3.24E-04
10	GO:0008235: metalloexopeptidase activity	4.56E-04
11	GO:0004177: aminopeptidase activity	9.07E-04
12	GO:0005388: calcium-transporting ATPase activity	1.07E-03
13	GO:0005516: calmodulin binding	1.11E-03
14	GO:0030552: cAMP binding	1.25E-03
15	GO:0030553: cGMP binding	1.25E-03
16	GO:0004407: histone deacetylase activity	1.43E-03
17	GO:0005216: ion channel activity	1.53E-03
18	GO:0005249: voltage-gated potassium channel activity	2.15E-03
19	GO:0030551: cyclic nucleotide binding	2.15E-03
20	GO:0010181: FMN binding	2.38E-03
21	GO:0008237: metallopeptidase activity	3.09E-03
22	GO:0003735: structural constituent of ribosome	3.83E-03
23	GO:0015238: drug transmembrane transporter activity	4.14E-03
24	GO:0003723: RNA binding	5.11E-03
25	GO:0004364: glutathione transferase activity	5.45E-03
26	GO:0051537: 2 iron, 2 sulfur cluster binding	5.91E-03
27	GO:0005215: transporter activity	1.20E-02
28	GO:0015297: antiporter activity	1.25E-02
29	GO:0046872: metal ion binding	1.69E-02
30	GO:0008233: peptidase activity	2.03E-02
31	GO:0004497: monooxygenase activity	2.05E-02
32	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.46E-02
33	GO:0009055: electron carrier activity	2.85E-02
34	GO:0000166: nucleotide binding	4.07E-02

Rank	GO Term	Adjusted P value
1	GO:0031428: box C/D snoRNP complex	1.84E-06
2	GO:0005730: nucleolus	4.61E-06
3	GO:0015030: Cajal body	1.05E-05
4	GO:0032040: small-subunit processome	1.85E-05
5	GO:0005886: plasma membrane	4.67E-04
6	GO:0005773: vacuole	5.85E-04
7	GO:0005758: mitochondrial intermembrane space	1.43E-03
8	GO:0009536: plastid	2.08E-03
9	GO:0022625: cytosolic large ribosomal subunit	2.17E-03
10	GO:0016592: mediator complex	2.73E-03
11	GO:0005887: integral component of plasma membrane	4.09E-03
12	GO:0005774: vacuolar membrane	7.73E-03
13	GO:0005834: heterotrimeric G-protein complex	8.08E-03
14	GO:0005840: ribosome	1.13E-02
15	GO:0009705: plant-type vacuole membrane	1.29E-02
16	GO:0046658: anchored component of plasma membrane	1.58E-02
17	GO:0022627: cytosolic small ribosomal subunit	1.58E-02
18	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.88E-02
19	GO:0031969: chloroplast membrane	2.05E-02
20	GO:0043231: intracellular membrane-bounded organelle	2.90E-02
21	GO:0016020: membrane	3.20E-02
22	GO:0022626: cytosolic ribosome	3.95E-02
23	GO:0005739: mitochondrion	4.82E-02