Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G31800

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901038: cyanidin 3-O-glucoside metabolic process0.00E+00
2GO:0010423: negative regulation of brassinosteroid biosynthetic process0.00E+00
3GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
4GO:0006971: hypotonic response0.00E+00
5GO:0034484: raffinose catabolic process0.00E+00
6GO:0006792: regulation of sulfur utilization0.00E+00
7GO:0010200: response to chitin2.30E-06
8GO:0009718: anthocyanin-containing compound biosynthetic process1.60E-05
9GO:0010411: xyloglucan metabolic process1.77E-05
10GO:0010438: cellular response to sulfur starvation3.81E-05
11GO:2000022: regulation of jasmonic acid mediated signaling pathway5.38E-05
12GO:0042546: cell wall biogenesis6.18E-05
13GO:0009751: response to salicylic acid6.73E-05
14GO:0009753: response to jasmonic acid8.28E-05
15GO:0009741: response to brassinosteroid1.00E-04
16GO:0030162: regulation of proteolysis1.35E-04
17GO:0010439: regulation of glucosinolate biosynthetic process1.35E-04
18GO:0033481: galacturonate biosynthetic process1.75E-04
19GO:0051973: positive regulation of telomerase activity1.75E-04
20GO:0080164: regulation of nitric oxide metabolic process1.75E-04
21GO:0048438: floral whorl development1.75E-04
22GO:0055063: sulfate ion homeostasis1.75E-04
23GO:0046500: S-adenosylmethionine metabolic process1.75E-04
24GO:1903507: negative regulation of nucleic acid-templated transcription3.36E-04
25GO:2000693: positive regulation of seed maturation3.96E-04
26GO:0071497: cellular response to freezing3.96E-04
27GO:0010220: positive regulation of vernalization response3.96E-04
28GO:0051592: response to calcium ion3.96E-04
29GO:0071395: cellular response to jasmonic acid stimulus3.96E-04
30GO:0071712: ER-associated misfolded protein catabolic process3.96E-04
31GO:0009737: response to abscisic acid4.47E-04
32GO:0042542: response to hydrogen peroxide5.89E-04
33GO:0080168: abscisic acid transport6.47E-04
34GO:0019419: sulfate reduction6.47E-04
35GO:0010581: regulation of starch biosynthetic process6.47E-04
36GO:0006355: regulation of transcription, DNA-templated7.53E-04
37GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process7.87E-04
38GO:0031347: regulation of defense response7.87E-04
39GO:1902358: sulfate transmembrane transport9.23E-04
40GO:0009743: response to carbohydrate9.23E-04
41GO:0040007: growth9.77E-04
42GO:0019722: calcium-mediated signaling1.06E-03
43GO:0009738: abscisic acid-activated signaling pathway1.15E-03
44GO:0034613: cellular protein localization1.22E-03
45GO:0046345: abscisic acid catabolic process1.22E-03
46GO:0000271: polysaccharide biosynthetic process1.23E-03
47GO:0030154: cell differentiation1.31E-03
48GO:0045489: pectin biosynthetic process1.32E-03
49GO:0009733: response to auxin1.40E-03
50GO:0009742: brassinosteroid mediated signaling pathway1.50E-03
51GO:0045893: positive regulation of transcription, DNA-templated1.55E-03
52GO:0006544: glycine metabolic process1.56E-03
53GO:0071368: cellular response to cytokinin stimulus1.56E-03
54GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.63E-03
55GO:0000060: protein import into nucleus, translocation1.91E-03
56GO:1902456: regulation of stomatal opening1.91E-03
57GO:0006563: L-serine metabolic process1.91E-03
58GO:0042732: D-xylose metabolic process1.91E-03
59GO:0009267: cellular response to starvation1.91E-03
60GO:0007267: cell-cell signaling2.09E-03
61GO:0009612: response to mechanical stimulus2.30E-03
62GO:0010076: maintenance of floral meristem identity2.30E-03
63GO:0010077: maintenance of inflorescence meristem identity2.30E-03
64GO:0009788: negative regulation of abscisic acid-activated signaling pathway2.47E-03
65GO:0050829: defense response to Gram-negative bacterium2.70E-03
66GO:0051510: regulation of unidimensional cell growth2.70E-03
67GO:0010038: response to metal ion2.70E-03
68GO:0048573: photoperiodism, flowering2.75E-03
69GO:2000070: regulation of response to water deprivation3.13E-03
70GO:0035265: organ growth3.13E-03
71GO:0009739: response to gibberellin3.20E-03
72GO:0006357: regulation of transcription from RNA polymerase II promoter3.35E-03
73GO:0048574: long-day photoperiodism, flowering3.58E-03
74GO:0044030: regulation of DNA methylation3.58E-03
75GO:2000031: regulation of salicylic acid mediated signaling pathway3.58E-03
76GO:0010099: regulation of photomorphogenesis3.58E-03
77GO:0009414: response to water deprivation4.02E-03
78GO:0051865: protein autoubiquitination4.05E-03
79GO:0019432: triglyceride biosynthetic process4.05E-03
80GO:0009638: phototropism4.54E-03
81GO:0035999: tetrahydrofolate interconversion4.54E-03
82GO:0006351: transcription, DNA-templated4.97E-03
83GO:0000103: sulfate assimilation5.05E-03
84GO:0043069: negative regulation of programmed cell death5.05E-03
85GO:0009611: response to wounding5.41E-03
86GO:0000272: polysaccharide catabolic process5.58E-03
87GO:0010015: root morphogenesis5.58E-03
88GO:0000038: very long-chain fatty acid metabolic process5.58E-03
89GO:0009723: response to ethylene5.81E-03
90GO:0010582: floral meristem determinacy6.13E-03
91GO:0016925: protein sumoylation6.13E-03
92GO:0016024: CDP-diacylglycerol biosynthetic process6.13E-03
93GO:0009585: red, far-red light phototransduction6.66E-03
94GO:0018107: peptidyl-threonine phosphorylation6.70E-03
95GO:0046777: protein autophosphorylation6.91E-03
96GO:0009409: response to cold7.11E-03
97GO:0010540: basipetal auxin transport7.28E-03
98GO:0034605: cellular response to heat7.28E-03
99GO:0010143: cutin biosynthetic process7.28E-03
100GO:0009969: xyloglucan biosynthetic process7.89E-03
101GO:0009225: nucleotide-sugar metabolic process7.89E-03
102GO:0010167: response to nitrate7.89E-03
103GO:0005985: sucrose metabolic process7.89E-03
104GO:0045454: cell redox homeostasis7.98E-03
105GO:0006636: unsaturated fatty acid biosynthetic process8.51E-03
106GO:2000377: regulation of reactive oxygen species metabolic process9.15E-03
107GO:0006487: protein N-linked glycosylation9.15E-03
108GO:0019344: cysteine biosynthetic process9.15E-03
109GO:0006629: lipid metabolic process1.04E-02
110GO:0016998: cell wall macromolecule catabolic process1.05E-02
111GO:0010017: red or far-red light signaling pathway1.12E-02
112GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.19E-02
113GO:0010118: stomatal movement1.41E-02
114GO:0048653: anther development1.41E-02
115GO:0009873: ethylene-activated signaling pathway1.44E-02
116GO:0009958: positive gravitropism1.49E-02
117GO:0010182: sugar mediated signaling pathway1.49E-02
118GO:0010268: brassinosteroid homeostasis1.49E-02
119GO:0071555: cell wall organization1.52E-02
120GO:0009646: response to absence of light1.56E-02
121GO:0009791: post-embryonic development1.64E-02
122GO:0007623: circadian rhythm1.65E-02
123GO:0016132: brassinosteroid biosynthetic process1.72E-02
124GO:0002229: defense response to oomycetes1.72E-02
125GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process1.84E-02
126GO:0009639: response to red or far red light1.98E-02
127GO:0009828: plant-type cell wall loosening1.98E-02
128GO:0016125: sterol metabolic process1.98E-02
129GO:0019760: glucosinolate metabolic process1.98E-02
130GO:0001666: response to hypoxia2.24E-02
131GO:0035556: intracellular signal transduction2.31E-02
132GO:0009826: unidimensional cell growth2.46E-02
133GO:0009658: chloroplast organization2.55E-02
134GO:0016311: dephosphorylation2.61E-02
135GO:0016049: cell growth2.61E-02
136GO:0006970: response to osmotic stress2.75E-02
137GO:0009860: pollen tube growth2.75E-02
138GO:0048767: root hair elongation2.80E-02
139GO:0016567: protein ubiquitination2.85E-02
140GO:0010218: response to far red light2.90E-02
141GO:0048527: lateral root development3.00E-02
142GO:0010119: regulation of stomatal movement3.00E-02
143GO:0048366: leaf development3.00E-02
144GO:0045087: innate immune response3.20E-02
145GO:0016051: carbohydrate biosynthetic process3.20E-02
146GO:0009637: response to blue light3.20E-02
147GO:0009651: response to salt stress3.35E-02
148GO:0010114: response to red light3.84E-02
149GO:0006855: drug transmembrane transport4.28E-02
150GO:0000165: MAPK cascade4.39E-02
151GO:0007165: signal transduction4.47E-02
152GO:0009809: lignin biosynthetic process4.74E-02
153GO:0006486: protein glycosylation4.74E-02
RankGO TermAdjusted P value
1GO:0045552: dihydrokaempferol 4-reductase activity0.00E+00
2GO:0102580: cyanidin 3-O-glucoside 2-O''-xylosyltransferase activity0.00E+00
3GO:0047890: flavanone 4-reductase activity0.00E+00
4GO:0035252: UDP-xylosyltransferase activity5.65E-05
5GO:0043565: sequence-specific DNA binding1.28E-04
6GO:0016762: xyloglucan:xyloglucosyl transferase activity1.37E-04
7GO:0090440: abscisic acid transporter activity1.75E-04
8GO:0080132: fatty acid alpha-hydroxylase activity1.75E-04
9GO:0003700: transcription factor activity, sequence-specific DNA binding2.11E-04
10GO:0044212: transcription regulatory region DNA binding2.78E-04
11GO:0016798: hydrolase activity, acting on glycosyl bonds2.87E-04
12GO:0050736: O-malonyltransferase activity3.96E-04
13GO:0048531: beta-1,3-galactosyltransferase activity3.96E-04
14GO:0009973: adenylyl-sulfate reductase activity3.96E-04
15GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity3.96E-04
16GO:0001047: core promoter binding3.96E-04
17GO:0044390: ubiquitin-like protein conjugating enzyme binding3.96E-04
18GO:0033741: adenylyl-sulfate reductase (glutathione) activity3.96E-04
19GO:0003712: transcription cofactor activity5.54E-04
20GO:0010295: (+)-abscisic acid 8'-hydroxylase activity6.47E-04
21GO:0052692: raffinose alpha-galactosidase activity6.47E-04
22GO:0003714: transcription corepressor activity6.82E-04
23GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity9.23E-04
24GO:0033843: xyloglucan 6-xylosyltransferase activity9.23E-04
25GO:0050378: UDP-glucuronate 4-epimerase activity1.22E-03
26GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway1.22E-03
27GO:0004402: histone acetyltransferase activity1.23E-03
28GO:0004372: glycine hydroxymethyltransferase activity1.56E-03
29GO:0031386: protein tag1.56E-03
30GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting1.59E-03
31GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.87E-03
32GO:0010427: abscisic acid binding1.91E-03
33GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity1.91E-03
34GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.91E-03
35GO:0016161: beta-amylase activity2.30E-03
36GO:0016621: cinnamoyl-CoA reductase activity2.70E-03
37GO:0008271: secondary active sulfate transmembrane transporter activity3.58E-03
38GO:0046982: protein heterodimerization activity4.71E-03
39GO:0004864: protein phosphatase inhibitor activity5.05E-03
40GO:0004860: protein kinase inhibitor activity5.58E-03
41GO:0015116: sulfate transmembrane transporter activity6.13E-03
42GO:0004842: ubiquitin-protein transferase activity7.37E-03
43GO:0031625: ubiquitin protein ligase binding7.38E-03
44GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.97E-03
45GO:0005515: protein binding9.23E-03
46GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.12E-02
47GO:0016758: transferase activity, transferring hexosyl groups1.16E-02
48GO:0016757: transferase activity, transferring glycosyl groups1.23E-02
49GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.36E-02
50GO:0001085: RNA polymerase II transcription factor binding1.49E-02
51GO:0050662: coenzyme binding1.56E-02
52GO:0004872: receptor activity1.64E-02
53GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor1.89E-02
54GO:0016791: phosphatase activity1.98E-02
55GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity2.06E-02
56GO:0008375: acetylglucosaminyltransferase activity2.42E-02
57GO:0009931: calcium-dependent protein serine/threonine kinase activity2.42E-02
58GO:0004674: protein serine/threonine kinase activity2.48E-02
59GO:0004806: triglyceride lipase activity2.52E-02
60GO:0004672: protein kinase activity2.69E-02
61GO:0016740: transferase activity2.76E-02
62GO:0043531: ADP binding2.80E-02
63GO:0015238: drug transmembrane transporter activity2.80E-02
64GO:0003677: DNA binding2.89E-02
65GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.00E-02
66GO:0004871: signal transducer activity3.96E-02
67GO:0015293: symporter activity4.17E-02
68GO:0016298: lipase activity4.86E-02
RankGO TermAdjusted P value
1GO:0090568: nuclear transcriptional repressor complex0.00E+00
2GO:0042406: extrinsic component of endoplasmic reticulum membrane6.47E-04
3GO:0036513: Derlin-1 retrotranslocation complex9.23E-04
4GO:0048046: apoplast1.61E-03
5GO:0019005: SCF ubiquitin ligase complex3.04E-03
6GO:0005615: extracellular space3.20E-03
7GO:0005794: Golgi apparatus5.86E-03
8GO:0015629: actin cytoskeleton1.19E-02
9GO:0005770: late endosome1.49E-02
10GO:0032580: Golgi cisterna membrane1.98E-02
11GO:0009505: plant-type cell wall2.13E-02
12GO:0005667: transcription factor complex2.42E-02
13GO:0009506: plasmodesma3.20E-02
14GO:0005634: nucleus3.48E-02
15GO:0031902: late endosome membrane3.62E-02
16GO:0005618: cell wall4.40E-02
17GO:0031966: mitochondrial membrane4.51E-02
Gene type



Gene DE type