co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051503: adenine nucleotide transport	0.00E+00
2	GO:0090042: tubulin deacetylation	0.00E+00
3	GO:0006650: glycerophospholipid metabolic process	3.88E-05
4	GO:0006081: cellular aldehyde metabolic process	6.95E-05
5	GO:0010239: chloroplast mRNA processing	1.05E-04
6	GO:0046902: regulation of mitochondrial membrane permeability	1.05E-04
7	GO:0006085: acetyl-CoA biosynthetic process	1.45E-04
8	GO:0009853: photorespiration	1.63E-04
9	GO:0006458: 'de novo' protein folding	2.82E-04
10	GO:0009854: oxidative photosynthetic carbon pathway	2.82E-04
11	GO:0042026: protein refolding	2.82E-04
12	GO:0005978: glycogen biosynthetic process	3.84E-04
13	GO:0009657: plastid organization	4.37E-04
14	GO:0006535: cysteine biosynthetic process from serine	6.08E-04
15	GO:0006415: translational termination	6.67E-04
16	GO:0009451: RNA modification	7.13E-04
17	GO:0090351: seedling development	9.19E-04
18	GO:0019344: cysteine biosynthetic process	1.05E-03
19	GO:0016575: histone deacetylation	1.12E-03
20	GO:0061077: chaperone-mediated protein folding	1.19E-03
21	GO:0006730: one-carbon metabolic process	1.26E-03
22	GO:0016117: carotenoid biosynthetic process	1.49E-03
23	GO:0019252: starch biosynthetic process	1.81E-03
24	GO:0008654: phospholipid biosynthetic process	1.81E-03
25	GO:0048573: photoperiodism, flowering	2.70E-03
26	GO:0051603: proteolysis involved in cellular protein catabolic process	5.07E-03
27	GO:0048367: shoot system development	5.68E-03
28	GO:0048316: seed development	5.68E-03
29	GO:0006396: RNA processing	6.44E-03
30	GO:0006810: transport	9.79E-03
31	GO:0008380: RNA splicing	1.04E-02
32	GO:0010468: regulation of gene expression	1.04E-02
33	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	1.19E-02
34	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.50E-02
35	GO:0009793: embryo development ending in seed dormancy	1.55E-02
36	GO:0015979: photosynthesis	1.60E-02
37	GO:0032259: methylation	1.87E-02
38	GO:0006629: lipid metabolic process	1.93E-02
39	GO:0048364: root development	1.99E-02
40	GO:0008152: metabolic process	2.07E-02
41	GO:0009738: abscisic acid-activated signaling pathway	2.83E-02
42	GO:0009416: response to light stimulus	2.90E-02
43	GO:0009611: response to wounding	2.95E-02
44	GO:0035556: intracellular signal transduction	3.01E-02
45	GO:0055085: transmembrane transport	3.44E-02
46	GO:0006457: protein folding	3.49E-02
47	GO:0009414: response to water deprivation	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0033721: aldehyde dehydrogenase (NADP+) activity	0.00E+00
2	GO:0008887: glycerate kinase activity	0.00E+00
3	GO:0043014: alpha-tubulin binding	0.00E+00
4	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
5	GO:0051721: protein phosphatase 2A binding	0.00E+00
6	GO:0042903: tubulin deacetylase activity	0.00E+00
7	GO:0046912: transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	1.48E-05
8	GO:0050017: L-3-cyanoalanine synthase activity	3.88E-05
9	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	3.88E-05
10	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	6.95E-05
11	GO:0048487: beta-tubulin binding	1.05E-04
12	GO:0016149: translation release factor activity, codon specific	1.05E-04
13	GO:0003878: ATP citrate synthase activity	1.05E-04
14	GO:0008878: glucose-1-phosphate adenylyltransferase activity	1.45E-04
15	GO:0005471: ATP:ADP antiporter activity	1.88E-04
16	GO:0008374: O-acyltransferase activity	1.88E-04
17	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.34E-04
18	GO:0004124: cysteine synthase activity	2.82E-04
19	GO:0051082: unfolded protein binding	4.12E-04
20	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	4.37E-04
21	GO:0003747: translation release factor activity	4.93E-04
22	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	5.49E-04
23	GO:0044183: protein binding involved in protein folding	6.67E-04
24	GO:0031072: heat shock protein binding	7.91E-04
25	GO:0004407: histone deacetylase activity	1.05E-03
26	GO:0004707: MAP kinase activity	1.19E-03
27	GO:0003756: protein disulfide isomerase activity	1.41E-03
28	GO:0004519: endonuclease activity	2.05E-03
29	GO:0000982: transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding	2.80E-03
30	GO:0005524: ATP binding	2.94E-03
31	GO:0000987: core promoter proximal region sequence-specific DNA binding	3.50E-03
32	GO:0004185: serine-type carboxypeptidase activity	4.04E-03
33	GO:0043621: protein self-association	4.26E-03
34	GO:0022857: transmembrane transporter activity	6.05E-03
35	GO:0016746: transferase activity, transferring acyl groups	6.44E-03
36	GO:0016829: lyase activity	7.79E-03
37	GO:0030170: pyridoxal phosphate binding	7.93E-03
38	GO:0004672: protein kinase activity	9.79E-03
39	GO:0008168: methyltransferase activity	1.22E-02
40	GO:0016740: transferase activity	3.34E-02
41	GO:0019825: oxygen binding	3.73E-02

Rank	GO Term	Adjusted P value
1	GO:0030931: heterotetrameric ADPG pyrophosphorylase complex	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0031224: intrinsic component of membrane	0.00E+00
4	GO:0009507: chloroplast	5.55E-08
5	GO:0009941: chloroplast envelope	1.30E-06
6	GO:0009346: citrate lyase complex	1.05E-04
7	GO:0009570: chloroplast stroma	3.43E-04
8	GO:0009508: plastid chromosome	7.91E-04
9	GO:0005875: microtubule associated complex	9.85E-04
10	GO:0043231: intracellular membrane-bounded organelle	2.07E-03
11	GO:0009295: nucleoid	2.24E-03
12	GO:0009535: chloroplast thylakoid membrane	2.39E-03
13	GO:0009534: chloroplast thylakoid	3.99E-03
14	GO:0010287: plastoglobule	7.10E-03
15	GO:0009536: plastid	8.17E-03
16	GO:0005759: mitochondrial matrix	8.64E-03
17	GO:0005743: mitochondrial inner membrane	1.83E-02
18	GO:0009579: thylakoid	3.29E-02
19	GO:0005829: cytosol	4.95E-02