co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31300

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900151: regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	0.00E+00
2	GO:0080034: host response to induction by symbiont of tumor, nodule or growth in host	0.00E+00
3	GO:0048227: plasma membrane to endosome transport	0.00E+00
4	GO:0030149: sphingolipid catabolic process	0.00E+00
5	GO:0030581: symbiont intracellular protein transport in host	0.00E+00
6	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.34E-07
7	GO:0046686: response to cadmium ion	2.71E-06
8	GO:0000162: tryptophan biosynthetic process	9.20E-06
9	GO:0030433: ubiquitin-dependent ERAD pathway	1.80E-05
10	GO:0080120: CAAX-box protein maturation	1.06E-04
11	GO:0071586: CAAX-box protein processing	1.06E-04
12	GO:0006422: aspartyl-tRNA aminoacylation	1.06E-04
13	GO:0033306: phytol metabolic process	1.06E-04
14	GO:0060211: regulation of nuclear-transcribed mRNA poly(A) tail shortening	1.06E-04
15	GO:0051775: response to redox state	1.06E-04
16	GO:0055081: anion homeostasis	1.06E-04
17	GO:0043069: negative regulation of programmed cell death	1.41E-04
18	GO:0006099: tricarboxylic acid cycle	1.90E-04
19	GO:0009617: response to bacterium	1.96E-04
20	GO:0006094: gluconeogenesis	2.19E-04
21	GO:0009156: ribonucleoside monophosphate biosynthetic process	2.48E-04
22	GO:0015914: phospholipid transport	2.48E-04
23	GO:0019752: carboxylic acid metabolic process	2.48E-04
24	GO:0019441: tryptophan catabolic process to kynurenine	2.48E-04
25	GO:0070588: calcium ion transmembrane transport	2.81E-04
26	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	4.12E-04
27	GO:0048281: inflorescence morphogenesis	4.12E-04
28	GO:0010498: proteasomal protein catabolic process	4.12E-04
29	GO:0006096: glycolytic process	4.66E-04
30	GO:0009561: megagametogenesis	5.47E-04
31	GO:0055114: oxidation-reduction process	5.53E-04
32	GO:0001676: long-chain fatty acid metabolic process	5.92E-04
33	GO:0010116: positive regulation of abscisic acid biosynthetic process	5.92E-04
34	GO:2000114: regulation of establishment of cell polarity	5.92E-04
35	GO:0072583: clathrin-dependent endocytosis	5.92E-04
36	GO:0010255: glucose mediated signaling pathway	5.92E-04
37	GO:0009165: nucleotide biosynthetic process	7.86E-04
38	GO:0010107: potassium ion import	7.86E-04
39	GO:0010193: response to ozone	8.40E-04
40	GO:0006564: L-serine biosynthetic process	9.92E-04
41	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	1.45E-03
42	GO:0048767: root hair elongation	1.62E-03
43	GO:1902074: response to salt	1.70E-03
44	GO:0010038: response to metal ion	1.70E-03
45	GO:0006102: isocitrate metabolic process	1.97E-03
46	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.97E-03
47	GO:0048766: root hair initiation	1.97E-03
48	GO:0009699: phenylpropanoid biosynthetic process	2.24E-03
49	GO:0010120: camalexin biosynthetic process	2.24E-03
50	GO:0006631: fatty acid metabolic process	2.30E-03
51	GO:0006607: NLS-bearing protein import into nucleus	2.53E-03
52	GO:0006098: pentose-phosphate shunt	2.53E-03
53	GO:0019432: triglyceride biosynthetic process	2.53E-03
54	GO:0090305: nucleic acid phosphodiester bond hydrolysis	2.53E-03
55	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	2.53E-03
56	GO:0034765: regulation of ion transmembrane transport	2.53E-03
57	GO:0090333: regulation of stomatal closure	2.53E-03
58	GO:0000209: protein polyubiquitination	2.60E-03
59	GO:0030042: actin filament depolymerization	2.84E-03
60	GO:0006511: ubiquitin-dependent protein catabolic process	2.89E-03
61	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.01E-03
62	GO:0006032: chitin catabolic process	3.15E-03
63	GO:0009682: induced systemic resistance	3.47E-03
64	GO:0052544: defense response by callose deposition in cell wall	3.47E-03
65	GO:0000272: polysaccharide catabolic process	3.47E-03
66	GO:0000266: mitochondrial fission	3.81E-03
67	GO:0055046: microgametogenesis	4.16E-03
68	GO:0005986: sucrose biosynthetic process	4.16E-03
69	GO:0006807: nitrogen compound metabolic process	4.16E-03
70	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	4.16E-03
71	GO:0006541: glutamine metabolic process	4.52E-03
72	GO:0006446: regulation of translational initiation	4.52E-03
73	GO:0006979: response to oxidative stress	5.35E-03
74	GO:0009116: nucleoside metabolic process	5.65E-03
75	GO:0080147: root hair cell development	5.65E-03
76	GO:0016998: cell wall macromolecule catabolic process	6.46E-03
77	GO:0042391: regulation of membrane potential	8.64E-03
78	GO:0009555: pollen development	8.91E-03
79	GO:0010154: fruit development	9.10E-03
80	GO:0006520: cellular amino acid metabolic process	9.10E-03
81	GO:0007166: cell surface receptor signaling pathway	9.37E-03
82	GO:0048544: recognition of pollen	9.58E-03
83	GO:0009851: auxin biosynthetic process	1.01E-02
84	GO:0019252: starch biosynthetic process	1.01E-02
85	GO:0009651: response to salt stress	1.02E-02
86	GO:0009630: gravitropism	1.11E-02
87	GO:0007264: small GTPase mediated signal transduction	1.11E-02
88	GO:0016032: viral process	1.11E-02
89	GO:0030163: protein catabolic process	1.16E-02
90	GO:0016579: protein deubiquitination	1.31E-02
91	GO:0001666: response to hypoxia	1.37E-02
92	GO:0046777: protein autophosphorylation	1.69E-02
93	GO:0045087: innate immune response	1.95E-02
94	GO:0042742: defense response to bacterium	2.18E-02
95	GO:0042542: response to hydrogen peroxide	2.27E-02
96	GO:0009408: response to heat	2.33E-02
97	GO:0009744: response to sucrose	2.34E-02
98	GO:0051707: response to other organism	2.34E-02
99	GO:0006397: mRNA processing	2.43E-02
100	GO:0008152: metabolic process	2.57E-02
101	GO:0050832: defense response to fungus	2.71E-02
102	GO:0009846: pollen germination	2.75E-02
103	GO:0006508: proteolysis	2.85E-02
104	GO:0006813: potassium ion transport	2.89E-02
105	GO:0051603: proteolysis involved in cellular protein catabolic process	2.97E-02
106	GO:0006417: regulation of translation	3.11E-02
107	GO:0048367: shoot system development	3.33E-02
108	GO:0048316: seed development	3.33E-02
109	GO:0009626: plant-type hypersensitive response	3.41E-02
110	GO:0009620: response to fungus	3.49E-02
111	GO:0009553: embryo sac development	3.64E-02
112	GO:0009735: response to cytokinin	3.78E-02
113	GO:0051726: regulation of cell cycle	3.88E-02
114	GO:0009058: biosynthetic process	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0050269: coniferyl-aldehyde dehydrogenase activity	0.00E+00
2	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
3	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
4	GO:0016857: racemase and epimerase activity, acting on carbohydrates and derivatives	0.00E+00
5	GO:0036402: proteasome-activating ATPase activity	1.34E-07
6	GO:0017025: TBP-class protein binding	7.61E-06
7	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.49E-05
8	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.06E-04
9	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.06E-04
10	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.06E-04
11	GO:0004815: aspartate-tRNA ligase activity	1.06E-04
12	GO:0008802: betaine-aldehyde dehydrogenase activity	1.06E-04
13	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.18E-04
14	GO:0005507: copper ion binding	1.21E-04
15	GO:0005388: calcium-transporting ATPase activity	2.19E-04
16	GO:0004617: phosphoglycerate dehydrogenase activity	2.48E-04
17	GO:0004750: ribulose-phosphate 3-epimerase activity	2.48E-04
18	GO:0004775: succinate-CoA ligase (ADP-forming) activity	2.48E-04
19	GO:0004061: arylformamidase activity	2.48E-04
20	GO:0015036: disulfide oxidoreductase activity	2.48E-04
21	GO:0004450: isocitrate dehydrogenase (NADP+) activity	2.48E-04
22	GO:0004776: succinate-CoA ligase (GDP-forming) activity	2.48E-04
23	GO:0005524: ATP binding	2.72E-04
24	GO:0051287: NAD binding	3.27E-04
25	GO:0016805: dipeptidase activity	4.12E-04
26	GO:0004049: anthranilate synthase activity	4.12E-04
27	GO:0005093: Rab GDP-dissociation inhibitor activity	4.12E-04
28	GO:0004324: ferredoxin-NADP+ reductase activity	4.12E-04
29	GO:0016491: oxidoreductase activity	4.76E-04
30	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	5.92E-04
31	GO:0004749: ribose phosphate diphosphokinase activity	5.92E-04
32	GO:0008276: protein methyltransferase activity	5.92E-04
33	GO:0004108: citrate (Si)-synthase activity	5.92E-04
34	GO:0004834: tryptophan synthase activity	7.86E-04
35	GO:0003995: acyl-CoA dehydrogenase activity	7.86E-04
36	GO:0005496: steroid binding	9.92E-04
37	GO:0004332: fructose-bisphosphate aldolase activity	1.21E-03
38	GO:0004526: ribonuclease P activity	1.21E-03
39	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	1.21E-03
40	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.21E-03
41	GO:0005242: inward rectifier potassium channel activity	1.45E-03
42	GO:0102391: decanoate--CoA ligase activity	1.45E-03
43	GO:0004144: diacylglycerol O-acyltransferase activity	1.45E-03
44	GO:0004656: procollagen-proline 4-dioxygenase activity	1.45E-03
45	GO:0004467: long-chain fatty acid-CoA ligase activity	1.70E-03
46	GO:0016831: carboxy-lyase activity	1.70E-03
47	GO:0008235: metalloexopeptidase activity	1.70E-03
48	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.70E-03
49	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.70E-03
50	GO:0008143: poly(A) binding	1.70E-03
51	GO:0000287: magnesium ion binding	1.96E-03
52	GO:0004033: aldo-keto reductase (NADP) activity	1.97E-03
53	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.97E-03
54	GO:0030955: potassium ion binding	2.84E-03
55	GO:0004743: pyruvate kinase activity	2.84E-03
56	GO:0004568: chitinase activity	3.15E-03
57	GO:0008171: O-methyltransferase activity	3.15E-03
58	GO:0005516: calmodulin binding	3.37E-03
59	GO:0004177: aminopeptidase activity	3.47E-03
60	GO:0004129: cytochrome-c oxidase activity	3.47E-03
61	GO:0008139: nuclear localization sequence binding	4.16E-03
62	GO:0031624: ubiquitin conjugating enzyme binding	4.52E-03
63	GO:0004175: endopeptidase activity	4.52E-03
64	GO:0004535: poly(A)-specific ribonuclease activity	4.52E-03
65	GO:0004190: aspartic-type endopeptidase activity	4.88E-03
66	GO:0008061: chitin binding	4.88E-03
67	GO:0031418: L-ascorbic acid binding	5.65E-03
68	GO:0008408: 3'-5' exonuclease activity	6.46E-03
69	GO:0035251: UDP-glucosyltransferase activity	6.46E-03
70	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	6.46E-03
71	GO:0030170: pyridoxal phosphate binding	6.59E-03
72	GO:0008565: protein transporter activity	7.10E-03
73	GO:0016887: ATPase activity	7.50E-03
74	GO:0030551: cyclic nucleotide binding	8.64E-03
75	GO:0030276: clathrin binding	9.10E-03
76	GO:0008194: UDP-glycosyltransferase activity	9.17E-03
77	GO:0010181: FMN binding	9.58E-03
78	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.06E-02
79	GO:0016597: amino acid binding	1.31E-02
80	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.59E-02
81	GO:0061630: ubiquitin protein ligase activity	1.66E-02
82	GO:0005096: GTPase activator activity	1.71E-02
83	GO:0004222: metalloendopeptidase activity	1.77E-02
84	GO:0030145: manganese ion binding	1.83E-02
85	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.95E-02
86	GO:0003746: translation elongation factor activity	1.95E-02
87	GO:0004674: protein serine/threonine kinase activity	1.97E-02
88	GO:0050661: NADP binding	2.14E-02
89	GO:0004364: glutathione transferase activity	2.27E-02
90	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.49E-02
91	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.49E-02
92	GO:0003729: mRNA binding	3.58E-02
93	GO:0003779: actin binding	3.64E-02
94	GO:0016746: transferase activity, transferring acyl groups	3.80E-02
95	GO:0020037: heme binding	3.84E-02
96	GO:0016758: transferase activity, transferring hexosyl groups	4.28E-02
97	GO:0004252: serine-type endopeptidase activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	5.57E-09
2	GO:0031597: cytosolic proteasome complex	2.38E-07
3	GO:0031595: nuclear proteasome complex	3.91E-07
4	GO:0008540: proteasome regulatory particle, base subcomplex	1.75E-06
5	GO:0005886: plasma membrane	2.42E-05
6	GO:0005783: endoplasmic reticulum	2.64E-05
7	GO:0000502: proteasome complex	2.70E-05
8	GO:0031972: chloroplast intermembrane space	1.06E-04
9	GO:0045334: clathrin-coated endocytic vesicle	1.06E-04
10	GO:0031314: extrinsic component of mitochondrial inner membrane	2.48E-04
11	GO:0005901: caveola	2.48E-04
12	GO:0005777: peroxisome	4.54E-04
13	GO:0009507: chloroplast	5.13E-04
14	GO:0005773: vacuole	7.34E-04
15	GO:0030660: Golgi-associated vesicle membrane	7.86E-04
16	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	7.86E-04
17	GO:0005746: mitochondrial respiratory chain	9.92E-04
18	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	1.97E-03
19	GO:0005789: endoplasmic reticulum membrane	2.58E-03
20	GO:0005740: mitochondrial envelope	3.15E-03
21	GO:0005774: vacuolar membrane	3.22E-03
22	GO:0005765: lysosomal membrane	3.47E-03
23	GO:0008541: proteasome regulatory particle, lid subcomplex	3.47E-03
24	GO:0030176: integral component of endoplasmic reticulum membrane	4.88E-03
25	GO:0010287: plastoglobule	5.63E-03
26	GO:0005887: integral component of plasma membrane	6.34E-03
27	GO:0015629: actin cytoskeleton	7.30E-03
28	GO:0009504: cell plate	1.01E-02
29	GO:0009570: chloroplast stroma	1.12E-02
30	GO:0000932: P-body	1.37E-02
31	GO:0005737: cytoplasm	1.60E-02
32	GO:0000151: ubiquitin ligase complex	1.65E-02
33	GO:0005643: nuclear pore	1.65E-02
34	GO:0016020: membrane	1.66E-02
35	GO:0009506: plasmodesma	1.68E-02
36	GO:0005622: intracellular	1.85E-02
37	GO:0031902: late endosome membrane	2.21E-02
38	GO:0043231: intracellular membrane-bounded organelle	2.57E-02
39	GO:0009536: plastid	2.81E-02
40	GO:0005618: cell wall	4.13E-02
41	GO:0005654: nucleoplasm	4.28E-02