co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G31290

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0000481: maturation of 5S rRNA	1.75E-04
6	GO:0042371: vitamin K biosynthetic process	1.75E-04
7	GO:0006106: fumarate metabolic process	1.75E-04
8	GO:0034337: RNA folding	1.75E-04
9	GO:0010206: photosystem II repair	2.06E-04
10	GO:0010205: photoinhibition	2.46E-04
11	GO:0016024: CDP-diacylglycerol biosynthetic process	3.86E-04
12	GO:0010115: regulation of abscisic acid biosynthetic process	3.96E-04
13	GO:0001736: establishment of planar polarity	3.96E-04
14	GO:0010024: phytochromobilin biosynthetic process	3.96E-04
15	GO:0006898: receptor-mediated endocytosis	3.96E-04
16	GO:0034755: iron ion transmembrane transport	3.96E-04
17	GO:0016042: lipid catabolic process	4.21E-04
18	GO:0010143: cutin biosynthetic process	4.96E-04
19	GO:0030001: metal ion transport	5.30E-04
20	GO:0006636: unsaturated fatty acid biosynthetic process	6.18E-04
21	GO:0090391: granum assembly	6.47E-04
22	GO:0016045: detection of bacterium	6.47E-04
23	GO:0010359: regulation of anion channel activity	6.47E-04
24	GO:0006788: heme oxidation	6.47E-04
25	GO:1901332: negative regulation of lateral root development	9.23E-04
26	GO:0051513: regulation of monopolar cell growth	9.23E-04
27	GO:0009152: purine ribonucleotide biosynthetic process	9.23E-04
28	GO:0046653: tetrahydrofolate metabolic process	9.23E-04
29	GO:0080170: hydrogen peroxide transmembrane transport	9.23E-04
30	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	9.23E-04
31	GO:0009800: cinnamic acid biosynthetic process	9.23E-04
32	GO:0009650: UV protection	9.23E-04
33	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.14E-03
34	GO:0009416: response to light stimulus	1.21E-03
35	GO:0010109: regulation of photosynthesis	1.22E-03
36	GO:0030104: water homeostasis	1.22E-03
37	GO:0034220: ion transmembrane transport	1.23E-03
38	GO:0010087: phloem or xylem histogenesis	1.23E-03
39	GO:0042335: cuticle development	1.23E-03
40	GO:0009733: response to auxin	1.40E-03
41	GO:0006596: polyamine biosynthetic process	1.91E-03
42	GO:0006561: proline biosynthetic process	1.91E-03
43	GO:0048759: xylem vessel member cell differentiation	1.91E-03
44	GO:0042549: photosystem II stabilization	1.91E-03
45	GO:0006559: L-phenylalanine catabolic process	1.91E-03
46	GO:0006655: phosphatidylglycerol biosynthetic process	1.91E-03
47	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.30E-03
48	GO:0017148: negative regulation of translation	2.30E-03
49	GO:0010027: thylakoid membrane organization	2.34E-03
50	GO:0005975: carbohydrate metabolic process	2.54E-03
51	GO:1900057: positive regulation of leaf senescence	2.70E-03
52	GO:0010444: guard mother cell differentiation	2.70E-03
53	GO:1900056: negative regulation of leaf senescence	2.70E-03
54	GO:0010196: nonphotochemical quenching	2.70E-03
55	GO:0015995: chlorophyll biosynthetic process	2.75E-03
56	GO:0006605: protein targeting	3.13E-03
57	GO:0032508: DNA duplex unwinding	3.13E-03
58	GO:0046620: regulation of organ growth	3.13E-03
59	GO:0010311: lateral root formation	3.19E-03
60	GO:0048589: developmental growth	4.05E-03
61	GO:0009051: pentose-phosphate shunt, oxidative branch	4.05E-03
62	GO:0009245: lipid A biosynthetic process	4.05E-03
63	GO:0006952: defense response	4.41E-03
64	GO:0009638: phototropism	4.54E-03
65	GO:0009926: auxin polar transport	4.95E-03
66	GO:0009688: abscisic acid biosynthetic process	5.05E-03
67	GO:0048829: root cap development	5.05E-03
68	GO:0006879: cellular iron ion homeostasis	5.58E-03
69	GO:0009750: response to fructose	5.58E-03
70	GO:0048765: root hair cell differentiation	5.58E-03
71	GO:0009684: indoleacetic acid biosynthetic process	5.58E-03
72	GO:0010015: root morphogenesis	5.58E-03
73	GO:0009773: photosynthetic electron transport in photosystem I	5.58E-03
74	GO:0052544: defense response by callose deposition in cell wall	5.58E-03
75	GO:0006855: drug transmembrane transport	5.77E-03
76	GO:0010152: pollen maturation	6.13E-03
77	GO:0010628: positive regulation of gene expression	6.70E-03
78	GO:0006108: malate metabolic process	6.70E-03
79	GO:0006006: glucose metabolic process	6.70E-03
80	GO:0010588: cotyledon vascular tissue pattern formation	6.70E-03
81	GO:0010102: lateral root morphogenesis	6.70E-03
82	GO:0009785: blue light signaling pathway	6.70E-03
83	GO:0010207: photosystem II assembly	7.28E-03
84	GO:0015979: photosynthesis	7.50E-03
85	GO:0010030: positive regulation of seed germination	7.89E-03
86	GO:0006833: water transport	8.51E-03
87	GO:0051017: actin filament bundle assembly	9.15E-03
88	GO:0009624: response to nematode	9.49E-03
89	GO:0006825: copper ion transport	9.80E-03
90	GO:0007017: microtubule-based process	9.80E-03
91	GO:0031408: oxylipin biosynthetic process	1.05E-02
92	GO:0003333: amino acid transmembrane transport	1.05E-02
93	GO:0048511: rhythmic process	1.05E-02
94	GO:0031348: negative regulation of defense response	1.12E-02
95	GO:0009411: response to UV	1.19E-02
96	GO:0042127: regulation of cell proliferation	1.26E-02
97	GO:0009306: protein secretion	1.26E-02
98	GO:0048443: stamen development	1.26E-02
99	GO:0080022: primary root development	1.41E-02
100	GO:0042631: cellular response to water deprivation	1.41E-02
101	GO:0010182: sugar mediated signaling pathway	1.49E-02
102	GO:0010305: leaf vascular tissue pattern formation	1.49E-02
103	GO:0009958: positive gravitropism	1.49E-02
104	GO:0007165: signal transduction	1.50E-02
105	GO:0006633: fatty acid biosynthetic process	1.50E-02
106	GO:0071555: cell wall organization	1.52E-02
107	GO:0042752: regulation of circadian rhythm	1.56E-02
108	GO:0009734: auxin-activated signaling pathway	1.61E-02
109	GO:0045490: pectin catabolic process	1.65E-02
110	GO:0071554: cell wall organization or biogenesis	1.72E-02
111	GO:0016032: viral process	1.81E-02
112	GO:0007166: cell surface receptor signaling pathway	1.88E-02
113	GO:0030163: protein catabolic process	1.89E-02
114	GO:0071281: cellular response to iron ion	1.89E-02
115	GO:0009735: response to cytokinin	1.92E-02
116	GO:0009627: systemic acquired resistance	2.42E-02
117	GO:0042128: nitrate assimilation	2.42E-02
118	GO:0016311: dephosphorylation	2.61E-02
119	GO:0009723: response to ethylene	2.95E-02
120	GO:0009631: cold acclimation	3.00E-02
121	GO:0006865: amino acid transport	3.10E-02
122	GO:0045087: innate immune response	3.20E-02
123	GO:0009853: photorespiration	3.20E-02
124	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.27E-02
125	GO:0006099: tricarboxylic acid cycle	3.31E-02
126	GO:0046777: protein autophosphorylation	3.38E-02
127	GO:0032259: methylation	4.46E-02
128	GO:0042538: hyperosmotic salinity response	4.51E-02
129	GO:0009737: response to abscisic acid	4.61E-02
130	GO:0009414: response to water deprivation	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
6	GO:0010487: thermospermine synthase activity	0.00E+00
7	GO:0043864: indoleacetamide hydrolase activity	0.00E+00
8	GO:0005528: FK506 binding	9.75E-09
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.34E-06
10	GO:0010011: auxin binding	2.35E-05
11	GO:0016491: oxidoreductase activity	1.23E-04
12	GO:0016788: hydrolase activity, acting on ester bonds	1.44E-04
13	GO:0016768: spermine synthase activity	1.75E-04
14	GO:0004333: fumarate hydratase activity	1.75E-04
15	GO:0030794: (S)-coclaurine-N-methyltransferase activity	1.75E-04
16	GO:0045485: omega-6 fatty acid desaturase activity	1.75E-04
17	GO:0052689: carboxylic ester hydrolase activity	2.59E-04
18	GO:0004871: signal transducer activity	3.29E-04
19	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.05E-04
20	GO:0090729: toxin activity	6.47E-04
21	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	6.47E-04
22	GO:0008864: formyltetrahydrofolate deformylase activity	6.47E-04
23	GO:0050734: hydroxycinnamoyltransferase activity	6.47E-04
24	GO:0045548: phenylalanine ammonia-lyase activity	6.47E-04
25	GO:0043023: ribosomal large subunit binding	9.23E-04
26	GO:0001872: (1->3)-beta-D-glucan binding	9.23E-04
27	GO:0016851: magnesium chelatase activity	9.23E-04
28	GO:0030570: pectate lyase activity	9.77E-04
29	GO:0004392: heme oxygenase (decyclizing) activity	1.22E-03
30	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.22E-03
31	GO:0004345: glucose-6-phosphate dehydrogenase activity	1.22E-03
32	GO:0010328: auxin influx transmembrane transporter activity	1.22E-03
33	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.22E-03
34	GO:0004040: amidase activity	1.56E-03
35	GO:0031177: phosphopantetheine binding	1.91E-03
36	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.91E-03
37	GO:0004629: phospholipase C activity	1.91E-03
38	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.91E-03
39	GO:0042578: phosphoric ester hydrolase activity	1.91E-03
40	GO:0016791: phosphatase activity	1.96E-03
41	GO:0016829: lyase activity	2.04E-03
42	GO:0000035: acyl binding	2.30E-03
43	GO:0004435: phosphatidylinositol phospholipase C activity	2.30E-03
44	GO:0015250: water channel activity	2.34E-03
45	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	3.13E-03
46	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.58E-03
47	GO:0003993: acid phosphatase activity	4.02E-03
48	GO:0005381: iron ion transmembrane transporter activity	4.54E-03
49	GO:0051537: 2 iron, 2 sulfur cluster binding	5.35E-03
50	GO:0008794: arsenate reductase (glutaredoxin) activity	5.58E-03
51	GO:0004022: alcohol dehydrogenase (NAD) activity	6.70E-03
52	GO:0031072: heat shock protein binding	6.70E-03
53	GO:0004565: beta-galactosidase activity	6.70E-03
54	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.28E-03
55	GO:0004650: polygalacturonase activity	8.66E-03
56	GO:0004722: protein serine/threonine phosphatase activity	8.97E-03
57	GO:0016746: transferase activity, transferring acyl groups	9.78E-03
58	GO:0003756: protein disulfide isomerase activity	1.26E-02
59	GO:0004518: nuclease activity	1.81E-02
60	GO:0051015: actin filament binding	1.89E-02
61	GO:0005200: structural constituent of cytoskeleton	2.06E-02
62	GO:0046872: metal ion binding	2.09E-02
63	GO:0016413: O-acetyltransferase activity	2.15E-02
64	GO:0030247: polysaccharide binding	2.52E-02
65	GO:0008236: serine-type peptidase activity	2.61E-02
66	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.71E-02
67	GO:0015238: drug transmembrane transporter activity	2.80E-02
68	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.90E-02
69	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.05E-02
70	GO:0050661: NADP binding	3.52E-02
71	GO:0015293: symporter activity	4.17E-02
72	GO:0009055: electron carrier activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009543: chloroplast thylakoid lumen	7.71E-11
3	GO:0009507: chloroplast	3.91E-08
4	GO:0031977: thylakoid lumen	7.52E-08
5	GO:0009579: thylakoid	9.32E-07
6	GO:0009570: chloroplast stroma	4.17E-06
7	GO:0009941: chloroplast envelope	2.13E-05
8	GO:0009534: chloroplast thylakoid	7.30E-05
9	GO:0009535: chloroplast thylakoid membrane	1.31E-04
10	GO:0009515: granal stacked thylakoid	1.75E-04
11	GO:0045239: tricarboxylic acid cycle enzyme complex	1.75E-04
12	GO:0043674: columella	1.75E-04
13	GO:0005886: plasma membrane	4.98E-04
14	GO:0010007: magnesium chelatase complex	6.47E-04
15	GO:0015630: microtubule cytoskeleton	9.23E-04
16	GO:0042807: central vacuole	2.70E-03
17	GO:0009986: cell surface	2.70E-03
18	GO:0009533: chloroplast stromal thylakoid	2.70E-03
19	GO:0008180: COP9 signalosome	4.05E-03
20	GO:0032040: small-subunit processome	6.13E-03
21	GO:0031969: chloroplast membrane	6.34E-03
22	GO:0000312: plastid small ribosomal subunit	7.28E-03
23	GO:0005576: extracellular region	8.65E-03
24	GO:0009654: photosystem II oxygen evolving complex	9.80E-03
25	GO:0015629: actin cytoskeleton	1.19E-02
26	GO:0019898: extrinsic component of membrane	1.64E-02
27	GO:0005618: cell wall	1.65E-02
28	GO:0009505: plant-type cell wall	2.13E-02
29	GO:0046658: anchored component of plasma membrane	2.18E-02
30	GO:0019005: SCF ubiquitin ligase complex	2.71E-02
31	GO:0031225: anchored component of membrane	3.75E-02
32	GO:0048046: apoplast	3.82E-02
33	GO:0005856: cytoskeleton	4.17E-02
34	GO:0000502: proteasome complex	4.74E-02