GO Enrichment Analysis of Co-expressed Genes with
AT4G31120
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071433: cell wall repair | 0.00E+00 |
| 2 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 3 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 4 | GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine | 2.76E-05 |
| 5 | GO:0006177: GMP biosynthetic process | 2.76E-05 |
| 6 | GO:0000494: box C/D snoRNA 3'-end processing | 2.76E-05 |
| 7 | GO:1990258: histone glutamine methylation | 2.76E-05 |
| 8 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 7.01E-05 |
| 9 | GO:0007005: mitochondrion organization | 7.33E-05 |
| 10 | GO:0006591: ornithine metabolic process | 1.23E-04 |
| 11 | GO:0008652: cellular amino acid biosynthetic process | 1.23E-04 |
| 12 | GO:0000460: maturation of 5.8S rRNA | 2.48E-04 |
| 13 | GO:0045116: protein neddylation | 3.18E-04 |
| 14 | GO:0031167: rRNA methylation | 3.18E-04 |
| 15 | GO:0000470: maturation of LSU-rRNA | 3.92E-04 |
| 16 | GO:0006458: 'de novo' protein folding | 4.69E-04 |
| 17 | GO:0009088: threonine biosynthetic process | 4.69E-04 |
| 18 | GO:0042026: protein refolding | 4.69E-04 |
| 19 | GO:0006364: rRNA processing | 6.17E-04 |
| 20 | GO:0050821: protein stabilization | 6.32E-04 |
| 21 | GO:0006526: arginine biosynthetic process | 7.18E-04 |
| 22 | GO:0001510: RNA methylation | 7.18E-04 |
| 23 | GO:0009735: response to cytokinin | 8.66E-04 |
| 24 | GO:0010162: seed dormancy process | 9.92E-04 |
| 25 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.09E-03 |
| 26 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.73E-03 |
| 27 | GO:0000027: ribosomal large subunit assembly | 1.73E-03 |
| 28 | GO:0006334: nucleosome assembly | 1.97E-03 |
| 29 | GO:0061077: chaperone-mediated protein folding | 1.97E-03 |
| 30 | GO:0007131: reciprocal meiotic recombination | 2.09E-03 |
| 31 | GO:0009294: DNA mediated transformation | 2.22E-03 |
| 32 | GO:0042254: ribosome biogenesis | 2.26E-03 |
| 33 | GO:0008033: tRNA processing | 2.61E-03 |
| 34 | GO:0006520: cellular amino acid metabolic process | 2.74E-03 |
| 35 | GO:0010193: response to ozone | 3.16E-03 |
| 36 | GO:0010252: auxin homeostasis | 3.60E-03 |
| 37 | GO:0032259: methylation | 3.86E-03 |
| 38 | GO:0046686: response to cadmium ion | 4.07E-03 |
| 39 | GO:0016049: cell growth | 4.70E-03 |
| 40 | GO:0048527: lateral root development | 5.38E-03 |
| 41 | GO:0010043: response to zinc ion | 5.38E-03 |
| 42 | GO:0009853: photorespiration | 5.73E-03 |
| 43 | GO:0006099: tricarboxylic acid cycle | 5.91E-03 |
| 44 | GO:0000154: rRNA modification | 7.40E-03 |
| 45 | GO:0009965: leaf morphogenesis | 7.40E-03 |
| 46 | GO:0006511: ubiquitin-dependent protein catabolic process | 9.68E-03 |
| 47 | GO:0016569: covalent chromatin modification | 1.03E-02 |
| 48 | GO:0006396: RNA processing | 1.10E-02 |
| 49 | GO:0006413: translational initiation | 1.51E-02 |
| 50 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 1.71E-02 |
| 51 | GO:0006412: translation | 1.88E-02 |
| 52 | GO:0009723: response to ethylene | 2.39E-02 |
| 53 | GO:0045454: cell redox homeostasis | 2.86E-02 |
| 54 | GO:0006281: DNA repair | 3.32E-02 |
| 55 | GO:0006397: mRNA processing | 3.42E-02 |
| 56 | GO:0048364: root development | 3.42E-02 |
| 57 | GO:0009734: auxin-activated signaling pathway | 4.24E-02 |
| 58 | GO:0009651: response to salt stress | 4.84E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004585: ornithine carbamoyltransferase activity | 0.00E+00 |
| 2 | GO:0004164: diphthine synthase activity | 0.00E+00 |
| 3 | GO:0050220: prostaglandin-E synthase activity | 0.00E+00 |
| 4 | GO:0030515: snoRNA binding | 5.50E-06 |
| 5 | GO:1990259: histone-glutamine methyltransferase activity | 2.76E-05 |
| 6 | GO:0004298: threonine-type endopeptidase activity | 6.61E-05 |
| 7 | GO:0019781: NEDD8 activating enzyme activity | 7.01E-05 |
| 8 | GO:0043021: ribonucleoprotein complex binding | 7.01E-05 |
| 9 | GO:0003938: IMP dehydrogenase activity | 7.01E-05 |
| 10 | GO:0016743: carboxyl- or carbamoyltransferase activity | 7.01E-05 |
| 11 | GO:0000166: nucleotide binding | 1.10E-04 |
| 12 | GO:0008649: rRNA methyltransferase activity | 1.23E-04 |
| 13 | GO:0004072: aspartate kinase activity | 1.83E-04 |
| 14 | GO:0016597: amino acid binding | 2.04E-04 |
| 15 | GO:0008233: peptidase activity | 2.80E-04 |
| 16 | GO:0008641: small protein activating enzyme activity | 3.18E-04 |
| 17 | GO:0008143: poly(A) binding | 5.49E-04 |
| 18 | GO:0008121: ubiquinol-cytochrome-c reductase activity | 5.49E-04 |
| 19 | GO:0044183: protein binding involved in protein folding | 1.09E-03 |
| 20 | GO:0004089: carbonate dehydratase activity | 1.29E-03 |
| 21 | GO:0000175: 3'-5'-exoribonuclease activity | 1.29E-03 |
| 22 | GO:0004407: histone deacetylase activity | 1.73E-03 |
| 23 | GO:0005528: FK506 binding | 1.73E-03 |
| 24 | GO:0004540: ribonuclease activity | 1.97E-03 |
| 25 | GO:0008168: methyltransferase activity | 2.14E-03 |
| 26 | GO:0004527: exonuclease activity | 2.74E-03 |
| 27 | GO:0008237: metallopeptidase activity | 3.75E-03 |
| 28 | GO:0003735: structural constituent of ribosome | 5.54E-03 |
| 29 | GO:0003746: translation elongation factor activity | 5.73E-03 |
| 30 | GO:0042393: histone binding | 6.27E-03 |
| 31 | GO:0051537: 2 iron, 2 sulfur cluster binding | 7.20E-03 |
| 32 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 7.59E-03 |
| 33 | GO:0003723: RNA binding | 8.01E-03 |
| 34 | GO:0051082: unfolded protein binding | 1.07E-02 |
| 35 | GO:0015035: protein disulfide oxidoreductase activity | 1.10E-02 |
| 36 | GO:0003743: translation initiation factor activity | 1.77E-02 |
| 37 | GO:0003729: mRNA binding | 2.16E-02 |
| 38 | GO:0003924: GTPase activity | 3.32E-02 |
| 39 | GO:0009055: electron carrier activity | 3.49E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005730: nucleolus | 6.83E-07 |
| 2 | GO:0031428: box C/D snoRNP complex | 2.69E-06 |
| 3 | GO:0019773: proteasome core complex, alpha-subunit complex | 9.62E-06 |
| 4 | GO:0032040: small-subunit processome | 2.63E-05 |
| 5 | GO:0005839: proteasome core complex | 6.61E-05 |
| 6 | GO:0005829: cytosol | 6.75E-05 |
| 7 | GO:0070545: PeBoW complex | 7.01E-05 |
| 8 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.43E-04 |
| 9 | GO:0030687: preribosome, large subunit precursor | 5.49E-04 |
| 10 | GO:0000502: proteasome complex | 6.17E-04 |
| 11 | GO:0045273: respiratory chain complex II | 6.32E-04 |
| 12 | GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) | 6.32E-04 |
| 13 | GO:0005747: mitochondrial respiratory chain complex I | 7.46E-04 |
| 14 | GO:0015030: Cajal body | 8.99E-04 |
| 15 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.09E-03 |
| 16 | GO:0005759: mitochondrial matrix | 1.32E-03 |
| 17 | GO:0005750: mitochondrial respiratory chain complex III | 1.40E-03 |
| 18 | GO:0005739: mitochondrion | 1.40E-03 |
| 19 | GO:0045271: respiratory chain complex I | 1.85E-03 |
| 20 | GO:0005840: ribosome | 2.47E-03 |
| 21 | GO:0015934: large ribosomal subunit | 5.38E-03 |
| 22 | GO:0022626: cytosolic ribosome | 6.81E-03 |
| 23 | GO:0031966: mitochondrial membrane | 7.99E-03 |
| 24 | GO:0005737: cytoplasm | 8.09E-03 |
| 25 | GO:0005834: heterotrimeric G-protein complex | 9.87E-03 |
| 26 | GO:0005654: nucleoplasm | 1.24E-02 |
| 27 | GO:0005773: vacuole | 1.93E-02 |
| 28 | GO:0009570: chloroplast stroma | 2.51E-02 |
| 29 | GO:0022625: cytosolic large ribosomal subunit | 2.61E-02 |
| 30 | GO:0005774: vacuolar membrane | 4.99E-02 |