co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30950

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0016553: base conversion or substitution editing	0.00E+00
4	GO:0034337: RNA folding	0.00E+00
5	GO:2000505: regulation of energy homeostasis	0.00E+00
6	GO:0009773: photosynthetic electron transport in photosystem I	2.46E-09
7	GO:0015979: photosynthesis	6.66E-07
8	GO:0090391: granum assembly	8.00E-06
9	GO:0016024: CDP-diacylglycerol biosynthetic process	2.07E-05
10	GO:0010027: thylakoid membrane organization	2.28E-05
11	GO:0010207: photosystem II assembly	3.16E-05
12	GO:0006655: phosphatidylglycerol biosynthetic process	7.90E-05
13	GO:1901259: chloroplast rRNA processing	1.10E-04
14	GO:0010196: nonphotochemical quenching	1.45E-04
15	GO:0009772: photosynthetic electron transport in photosystem II	1.45E-04
16	GO:1902025: nitrate import	2.16E-04
17	GO:0071277: cellular response to calcium ion	2.16E-04
18	GO:0043489: RNA stabilization	2.16E-04
19	GO:0000481: maturation of 5S rRNA	2.16E-04
20	GO:0090548: response to nitrate starvation	2.16E-04
21	GO:0005991: trehalose metabolic process	2.16E-04
22	GO:0071588: hydrogen peroxide mediated signaling pathway	2.16E-04
23	GO:0032544: plastid translation	2.29E-04
24	GO:0015995: chlorophyll biosynthetic process	4.21E-04
25	GO:0034755: iron ion transmembrane transport	4.81E-04
26	GO:0010115: regulation of abscisic acid biosynthetic process	4.81E-04
27	GO:0001736: establishment of planar polarity	4.81E-04
28	GO:0010024: phytochromobilin biosynthetic process	4.81E-04
29	GO:0009416: response to light stimulus	4.93E-04
30	GO:0015714: phosphoenolpyruvate transport	7.83E-04
31	GO:0006788: heme oxidation	7.83E-04
32	GO:0006518: peptide metabolic process	7.83E-04
33	GO:0080170: hydrogen peroxide transmembrane transport	1.12E-03
34	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.12E-03
35	GO:0009800: cinnamic acid biosynthetic process	1.12E-03
36	GO:1901332: negative regulation of lateral root development	1.12E-03
37	GO:0010371: regulation of gibberellin biosynthetic process	1.12E-03
38	GO:0071484: cellular response to light intensity	1.12E-03
39	GO:0010239: chloroplast mRNA processing	1.12E-03
40	GO:0009306: protein secretion	1.40E-03
41	GO:0030104: water homeostasis	1.48E-03
42	GO:0015713: phosphoglycerate transport	1.48E-03
43	GO:0045727: positive regulation of translation	1.48E-03
44	GO:0015994: chlorophyll metabolic process	1.48E-03
45	GO:0042335: cuticle development	1.63E-03
46	GO:0080022: primary root development	1.63E-03
47	GO:0010182: sugar mediated signaling pathway	1.76E-03
48	GO:0006564: L-serine biosynthetic process	1.89E-03
49	GO:0010236: plastoquinone biosynthetic process	1.89E-03
50	GO:0006461: protein complex assembly	1.89E-03
51	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.99E-03
52	GO:0006559: L-phenylalanine catabolic process	2.33E-03
53	GO:0009913: epidermal cell differentiation	2.33E-03
54	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.33E-03
55	GO:0006561: proline biosynthetic process	2.33E-03
56	GO:0006751: glutathione catabolic process	2.33E-03
57	GO:0042549: photosystem II stabilization	2.33E-03
58	GO:0000470: maturation of LSU-rRNA	2.33E-03
59	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.80E-03
60	GO:0017148: negative regulation of translation	2.80E-03
61	GO:0010189: vitamin E biosynthetic process	2.80E-03
62	GO:0010019: chloroplast-nucleus signaling pathway	2.80E-03
63	GO:0032259: methylation	3.20E-03
64	GO:0016042: lipid catabolic process	3.27E-03
65	GO:1900057: positive regulation of leaf senescence	3.30E-03
66	GO:0010444: guard mother cell differentiation	3.30E-03
67	GO:0006400: tRNA modification	3.30E-03
68	GO:0009395: phospholipid catabolic process	3.30E-03
69	GO:0008610: lipid biosynthetic process	3.82E-03
70	GO:0030091: protein repair	3.82E-03
71	GO:0006353: DNA-templated transcription, termination	3.82E-03
72	GO:0070413: trehalose metabolism in response to stress	3.82E-03
73	GO:0006605: protein targeting	3.82E-03
74	GO:0009704: de-etiolation	3.82E-03
75	GO:0032508: DNA duplex unwinding	3.82E-03
76	GO:0016559: peroxisome fission	3.82E-03
77	GO:0018298: protein-chromophore linkage	4.06E-03
78	GO:0010311: lateral root formation	4.27E-03
79	GO:0009657: plastid organization	4.38E-03
80	GO:0009631: cold acclimation	4.69E-03
81	GO:0010206: photosystem II repair	4.95E-03
82	GO:0090333: regulation of stomatal closure	4.95E-03
83	GO:0000373: Group II intron splicing	4.95E-03
84	GO:0010205: photoinhibition	5.56E-03
85	GO:0009638: phototropism	5.56E-03
86	GO:0009688: abscisic acid biosynthetic process	6.18E-03
87	GO:0048829: root cap development	6.18E-03
88	GO:0008285: negative regulation of cell proliferation	6.84E-03
89	GO:0006879: cellular iron ion homeostasis	6.84E-03
90	GO:0009750: response to fructose	6.84E-03
91	GO:0018119: peptidyl-cysteine S-nitrosylation	6.84E-03
92	GO:0048765: root hair cell differentiation	6.84E-03
93	GO:0000038: very long-chain fatty acid metabolic process	6.84E-03
94	GO:0009735: response to cytokinin	7.14E-03
95	GO:0042254: ribosome biogenesis	7.18E-03
96	GO:0010588: cotyledon vascular tissue pattern formation	8.22E-03
97	GO:0009785: blue light signaling pathway	8.22E-03
98	GO:0010628: positive regulation of gene expression	8.22E-03
99	GO:0006006: glucose metabolic process	8.22E-03
100	GO:0009718: anthocyanin-containing compound biosynthetic process	8.22E-03
101	GO:0009725: response to hormone	8.22E-03
102	GO:0010143: cutin biosynthetic process	8.94E-03
103	GO:0010020: chloroplast fission	8.94E-03
104	GO:0006364: rRNA processing	8.94E-03
105	GO:0019253: reductive pentose-phosphate cycle	8.94E-03
106	GO:0071732: cellular response to nitric oxide	9.69E-03
107	GO:0010030: positive regulation of seed germination	9.69E-03
108	GO:0010025: wax biosynthetic process	1.05E-02
109	GO:0006636: unsaturated fatty acid biosynthetic process	1.05E-02
110	GO:0006096: glycolytic process	1.06E-02
111	GO:0005992: trehalose biosynthetic process	1.12E-02
112	GO:0006487: protein N-linked glycosylation	1.12E-02
113	GO:0009409: response to cold	1.19E-02
114	GO:0007017: microtubule-based process	1.21E-02
115	GO:0009768: photosynthesis, light harvesting in photosystem I	1.21E-02
116	GO:0010073: meristem maintenance	1.21E-02
117	GO:0031408: oxylipin biosynthetic process	1.29E-02
118	GO:0003333: amino acid transmembrane transport	1.29E-02
119	GO:0048511: rhythmic process	1.29E-02
120	GO:0035428: hexose transmembrane transport	1.37E-02
121	GO:0071369: cellular response to ethylene stimulus	1.46E-02
122	GO:0010227: floral organ abscission	1.46E-02
123	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.46E-02
124	GO:0042127: regulation of cell proliferation	1.55E-02
125	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.64E-02
126	GO:0034220: ion transmembrane transport	1.74E-02
127	GO:0010087: phloem or xylem histogenesis	1.74E-02
128	GO:0042631: cellular response to water deprivation	1.74E-02
129	GO:0009958: positive gravitropism	1.83E-02
130	GO:0010305: leaf vascular tissue pattern formation	1.83E-02
131	GO:0046323: glucose import	1.83E-02
132	GO:0015986: ATP synthesis coupled proton transport	1.93E-02
133	GO:0042752: regulation of circadian rhythm	1.93E-02
134	GO:0006412: translation	1.96E-02
135	GO:0006633: fatty acid biosynthetic process	2.01E-02
136	GO:0000302: response to reactive oxygen species	2.12E-02
137	GO:0007623: circadian rhythm	2.21E-02
138	GO:0045490: pectin catabolic process	2.21E-02
139	GO:0016032: viral process	2.23E-02
140	GO:0009451: RNA modification	2.26E-02
141	GO:0071281: cellular response to iron ion	2.33E-02
142	GO:0009734: auxin-activated signaling pathway	2.33E-02
143	GO:0009828: plant-type cell wall loosening	2.44E-02
144	GO:0016311: dephosphorylation	3.22E-02
145	GO:0009658: chloroplast organization	3.42E-02
146	GO:0009832: plant-type cell wall biogenesis	3.46E-02
147	GO:0010218: response to far red light	3.58E-02
148	GO:0045893: positive regulation of transcription, DNA-templated	3.69E-02
149	GO:0006865: amino acid transport	3.82E-02
150	GO:0045087: innate immune response	3.95E-02
151	GO:0009637: response to blue light	3.95E-02
152	GO:0034599: cellular response to oxidative stress	4.07E-02
153	GO:0006810: transport	4.13E-02
154	GO:0080167: response to karrikin	4.23E-02
155	GO:0009640: photomorphogenesis	4.73E-02
156	GO:0010114: response to red light	4.73E-02
157	GO:0009926: auxin polar transport	4.73E-02
158	GO:0009744: response to sucrose	4.73E-02
159	GO:0009644: response to high light intensity	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
2	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
3	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
4	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0019843: rRNA binding	2.95E-10
7	GO:0005528: FK506 binding	2.18E-08
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	9.05E-06
9	GO:0016788: hydrolase activity, acting on ester bonds	3.30E-05
10	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	7.90E-05
11	GO:0015121: phosphoenolpyruvate:phosphate antiporter activity	2.16E-04
12	GO:0005080: protein kinase C binding	2.16E-04
13	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.16E-04
14	GO:0030794: (S)-coclaurine-N-methyltransferase activity	2.16E-04
15	GO:0052689: carboxylic ester hydrolase activity	4.48E-04
16	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.81E-04
17	GO:0047746: chlorophyllase activity	4.81E-04
18	GO:0003839: gamma-glutamylcyclotransferase activity	4.81E-04
19	GO:0004617: phosphoglycerate dehydrogenase activity	4.81E-04
20	GO:0004565: beta-galactosidase activity	5.83E-04
21	GO:0008266: poly(U) RNA binding	6.57E-04
22	GO:0045548: phenylalanine ammonia-lyase activity	7.83E-04
23	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.83E-04
24	GO:0016851: magnesium chelatase activity	1.12E-03
25	GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	1.12E-03
26	GO:0043023: ribosomal large subunit binding	1.12E-03
27	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.12E-03
28	GO:0030570: pectate lyase activity	1.29E-03
29	GO:0010328: auxin influx transmembrane transporter activity	1.48E-03
30	GO:0052793: pectin acetylesterase activity	1.48E-03
31	GO:0042277: peptide binding	1.48E-03
32	GO:0004392: heme oxygenase (decyclizing) activity	1.48E-03
33	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	1.48E-03
34	GO:0015120: phosphoglycerate transmembrane transporter activity	1.48E-03
35	GO:0010011: auxin binding	1.48E-03
36	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.48E-03
37	GO:0016746: transferase activity, transferring acyl groups	2.09E-03
38	GO:0004130: cytochrome-c peroxidase activity	2.33E-03
39	GO:0016688: L-ascorbate peroxidase activity	2.33E-03
40	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.33E-03
41	GO:0016791: phosphatase activity	2.62E-03
42	GO:0004871: signal transducer activity	2.67E-03
43	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.80E-03
44	GO:0004017: adenylate kinase activity	2.80E-03
45	GO:0016168: chlorophyll binding	3.30E-03
46	GO:0043022: ribosome binding	3.82E-03
47	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.06E-03
48	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	4.38E-03
49	GO:0003993: acid phosphatase activity	5.38E-03
50	GO:0005381: iron ion transmembrane transporter activity	5.56E-03
51	GO:0008168: methyltransferase activity	6.68E-03
52	GO:0003735: structural constituent of ribosome	7.73E-03
53	GO:0051287: NAD binding	8.03E-03
54	GO:0004022: alcohol dehydrogenase (NAD) activity	8.22E-03
55	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.05E-02
56	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.05E-02
57	GO:0031409: pigment binding	1.05E-02
58	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.05E-02
59	GO:0004176: ATP-dependent peptidase activity	1.29E-02
60	GO:0003729: mRNA binding	1.40E-02
61	GO:0022891: substrate-specific transmembrane transporter activity	1.46E-02
62	GO:0016829: lyase activity	1.73E-02
63	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.83E-02
64	GO:0008080: N-acetyltransferase activity	1.83E-02
65	GO:0005355: glucose transmembrane transporter activity	1.93E-02
66	GO:0050662: coenzyme binding	1.93E-02
67	GO:0004872: receptor activity	2.02E-02
68	GO:0004518: nuclease activity	2.23E-02
69	GO:0005200: structural constituent of cytoskeleton	2.54E-02
70	GO:0016597: amino acid binding	2.65E-02
71	GO:0015250: water channel activity	2.76E-02
72	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.81E-02
73	GO:0042802: identical protein binding	2.81E-02
74	GO:0008375: acetylglucosaminyltransferase activity	2.99E-02
75	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.22E-02
76	GO:0016491: oxidoreductase activity	3.53E-02
77	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.58E-02
78	GO:0004222: metalloendopeptidase activity	3.58E-02
79	GO:0003746: translation elongation factor activity	3.95E-02
80	GO:0004672: protein kinase activity	4.13E-02
81	GO:0051539: 4 iron, 4 sulfur cluster binding	4.33E-02
82	GO:0050661: NADP binding	4.33E-02
83	GO:0003723: RNA binding	4.42E-02
84	GO:0043621: protein self-association	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0009515: granal stacked thylakoid	0.00E+00
2	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
3	GO:0009507: chloroplast	3.50E-35
4	GO:0009535: chloroplast thylakoid membrane	1.11E-23
5	GO:0009534: chloroplast thylakoid	6.22E-21
6	GO:0009579: thylakoid	3.36E-18
7	GO:0009941: chloroplast envelope	2.31E-17
8	GO:0009543: chloroplast thylakoid lumen	7.15E-15
9	GO:0009570: chloroplast stroma	8.82E-13
10	GO:0031977: thylakoid lumen	1.43E-10
11	GO:0030095: chloroplast photosystem II	6.41E-07
12	GO:0005840: ribosome	1.50E-04
13	GO:0009523: photosystem II	1.87E-04
14	GO:0043674: columella	2.16E-04
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.78E-04
16	GO:0031969: chloroplast membrane	3.73E-04
17	GO:0030093: chloroplast photosystem I	4.81E-04
18	GO:0032040: small-subunit processome	5.15E-04
19	GO:0010007: magnesium chelatase complex	7.83E-04
20	GO:0015630: microtubule cytoskeleton	1.12E-03
21	GO:0016021: integral component of membrane	2.18E-03
22	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.33E-03
23	GO:0010287: plastoglobule	2.50E-03
24	GO:0042807: central vacuole	3.30E-03
25	GO:0009986: cell surface	3.30E-03
26	GO:0009533: chloroplast stromal thylakoid	3.30E-03
27	GO:0008180: COP9 signalosome	4.95E-03
28	GO:0016020: membrane	6.44E-03
29	GO:0009508: plastid chromosome	8.22E-03
30	GO:0000312: plastid small ribosomal subunit	8.94E-03
31	GO:0048046: apoplast	9.17E-03
32	GO:0030076: light-harvesting complex	9.69E-03
33	GO:0005618: cell wall	1.10E-02
34	GO:0009654: photosystem II oxygen evolving complex	1.21E-02
35	GO:0009522: photosystem I	1.93E-02
36	GO:0019898: extrinsic component of membrane	2.02E-02
37	GO:0009295: nucleoid	2.54E-02
38	GO:0010319: stromule	2.54E-02
39	GO:0030529: intracellular ribonucleoprotein complex	2.76E-02
40	GO:0009536: plastid	3.19E-02
41	GO:0009707: chloroplast outer membrane	3.34E-02
42	GO:0019005: SCF ubiquitin ligase complex	3.34E-02
43	GO:0015934: large ribosomal subunit	3.70E-02
44	GO:0005886: plasma membrane	3.73E-02
45	GO:0005576: extracellular region	4.92E-02