Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G30950

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090071: negative regulation of ribosome biogenesis0.00E+00
2GO:0090470: shoot organ boundary specification0.00E+00
3GO:0016553: base conversion or substitution editing0.00E+00
4GO:0034337: RNA folding0.00E+00
5GO:2000505: regulation of energy homeostasis0.00E+00
6GO:0009773: photosynthetic electron transport in photosystem I2.46E-09
7GO:0015979: photosynthesis6.66E-07
8GO:0090391: granum assembly8.00E-06
9GO:0016024: CDP-diacylglycerol biosynthetic process2.07E-05
10GO:0010027: thylakoid membrane organization2.28E-05
11GO:0010207: photosystem II assembly3.16E-05
12GO:0006655: phosphatidylglycerol biosynthetic process7.90E-05
13GO:1901259: chloroplast rRNA processing1.10E-04
14GO:0010196: nonphotochemical quenching1.45E-04
15GO:0009772: photosynthetic electron transport in photosystem II1.45E-04
16GO:1902025: nitrate import2.16E-04
17GO:0071277: cellular response to calcium ion2.16E-04
18GO:0043489: RNA stabilization2.16E-04
19GO:0000481: maturation of 5S rRNA2.16E-04
20GO:0090548: response to nitrate starvation2.16E-04
21GO:0005991: trehalose metabolic process2.16E-04
22GO:0071588: hydrogen peroxide mediated signaling pathway2.16E-04
23GO:0032544: plastid translation2.29E-04
24GO:0015995: chlorophyll biosynthetic process4.21E-04
25GO:0034755: iron ion transmembrane transport4.81E-04
26GO:0010115: regulation of abscisic acid biosynthetic process4.81E-04
27GO:0001736: establishment of planar polarity4.81E-04
28GO:0010024: phytochromobilin biosynthetic process4.81E-04
29GO:0009416: response to light stimulus4.93E-04
30GO:0015714: phosphoenolpyruvate transport7.83E-04
31GO:0006788: heme oxidation7.83E-04
32GO:0006518: peptide metabolic process7.83E-04
33GO:0080170: hydrogen peroxide transmembrane transport1.12E-03
34GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.12E-03
35GO:0009800: cinnamic acid biosynthetic process1.12E-03
36GO:1901332: negative regulation of lateral root development1.12E-03
37GO:0010371: regulation of gibberellin biosynthetic process1.12E-03
38GO:0071484: cellular response to light intensity1.12E-03
39GO:0010239: chloroplast mRNA processing1.12E-03
40GO:0009306: protein secretion1.40E-03
41GO:0030104: water homeostasis1.48E-03
42GO:0015713: phosphoglycerate transport1.48E-03
43GO:0045727: positive regulation of translation1.48E-03
44GO:0015994: chlorophyll metabolic process1.48E-03
45GO:0042335: cuticle development1.63E-03
46GO:0080022: primary root development1.63E-03
47GO:0010182: sugar mediated signaling pathway1.76E-03
48GO:0006564: L-serine biosynthetic process1.89E-03
49GO:0010236: plastoquinone biosynthetic process1.89E-03
50GO:0006461: protein complex assembly1.89E-03
51GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.99E-03
52GO:0006559: L-phenylalanine catabolic process2.33E-03
53GO:0009913: epidermal cell differentiation2.33E-03
54GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.33E-03
55GO:0006561: proline biosynthetic process2.33E-03
56GO:0006751: glutathione catabolic process2.33E-03
57GO:0042549: photosystem II stabilization2.33E-03
58GO:0000470: maturation of LSU-rRNA2.33E-03
59GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2.80E-03
60GO:0017148: negative regulation of translation2.80E-03
61GO:0010189: vitamin E biosynthetic process2.80E-03
62GO:0010019: chloroplast-nucleus signaling pathway2.80E-03
63GO:0032259: methylation3.20E-03
64GO:0016042: lipid catabolic process3.27E-03
65GO:1900057: positive regulation of leaf senescence3.30E-03
66GO:0010444: guard mother cell differentiation3.30E-03
67GO:0006400: tRNA modification3.30E-03
68GO:0009395: phospholipid catabolic process3.30E-03
69GO:0008610: lipid biosynthetic process3.82E-03
70GO:0030091: protein repair3.82E-03
71GO:0006353: DNA-templated transcription, termination3.82E-03
72GO:0070413: trehalose metabolism in response to stress3.82E-03
73GO:0006605: protein targeting3.82E-03
74GO:0009704: de-etiolation3.82E-03
75GO:0032508: DNA duplex unwinding3.82E-03
76GO:0016559: peroxisome fission3.82E-03
77GO:0018298: protein-chromophore linkage4.06E-03
78GO:0010311: lateral root formation4.27E-03
79GO:0009657: plastid organization4.38E-03
80GO:0009631: cold acclimation4.69E-03
81GO:0010206: photosystem II repair4.95E-03
82GO:0090333: regulation of stomatal closure4.95E-03
83GO:0000373: Group II intron splicing4.95E-03
84GO:0010205: photoinhibition5.56E-03
85GO:0009638: phototropism5.56E-03
86GO:0009688: abscisic acid biosynthetic process6.18E-03
87GO:0048829: root cap development6.18E-03
88GO:0008285: negative regulation of cell proliferation6.84E-03
89GO:0006879: cellular iron ion homeostasis6.84E-03
90GO:0009750: response to fructose6.84E-03
91GO:0018119: peptidyl-cysteine S-nitrosylation6.84E-03
92GO:0048765: root hair cell differentiation6.84E-03
93GO:0000038: very long-chain fatty acid metabolic process6.84E-03
94GO:0009735: response to cytokinin7.14E-03
95GO:0042254: ribosome biogenesis7.18E-03
96GO:0010588: cotyledon vascular tissue pattern formation8.22E-03
97GO:0009785: blue light signaling pathway8.22E-03
98GO:0010628: positive regulation of gene expression8.22E-03
99GO:0006006: glucose metabolic process8.22E-03
100GO:0009718: anthocyanin-containing compound biosynthetic process8.22E-03
101GO:0009725: response to hormone8.22E-03
102GO:0010143: cutin biosynthetic process8.94E-03
103GO:0010020: chloroplast fission8.94E-03
104GO:0006364: rRNA processing8.94E-03
105GO:0019253: reductive pentose-phosphate cycle8.94E-03
106GO:0071732: cellular response to nitric oxide9.69E-03
107GO:0010030: positive regulation of seed germination9.69E-03
108GO:0010025: wax biosynthetic process1.05E-02
109GO:0006636: unsaturated fatty acid biosynthetic process1.05E-02
110GO:0006096: glycolytic process1.06E-02
111GO:0005992: trehalose biosynthetic process1.12E-02
112GO:0006487: protein N-linked glycosylation1.12E-02
113GO:0009409: response to cold1.19E-02
114GO:0007017: microtubule-based process1.21E-02
115GO:0009768: photosynthesis, light harvesting in photosystem I1.21E-02
116GO:0010073: meristem maintenance1.21E-02
117GO:0031408: oxylipin biosynthetic process1.29E-02
118GO:0003333: amino acid transmembrane transport1.29E-02
119GO:0048511: rhythmic process1.29E-02
120GO:0035428: hexose transmembrane transport1.37E-02
121GO:0071369: cellular response to ethylene stimulus1.46E-02
122GO:0010227: floral organ abscission1.46E-02
123GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.46E-02
124GO:0042127: regulation of cell proliferation1.55E-02
125GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.64E-02
126GO:0034220: ion transmembrane transport1.74E-02
127GO:0010087: phloem or xylem histogenesis1.74E-02
128GO:0042631: cellular response to water deprivation1.74E-02
129GO:0009958: positive gravitropism1.83E-02
130GO:0010305: leaf vascular tissue pattern formation1.83E-02
131GO:0046323: glucose import1.83E-02
132GO:0015986: ATP synthesis coupled proton transport1.93E-02
133GO:0042752: regulation of circadian rhythm1.93E-02
134GO:0006412: translation1.96E-02
135GO:0006633: fatty acid biosynthetic process2.01E-02
136GO:0000302: response to reactive oxygen species2.12E-02
137GO:0007623: circadian rhythm2.21E-02
138GO:0045490: pectin catabolic process2.21E-02
139GO:0016032: viral process2.23E-02
140GO:0009451: RNA modification2.26E-02
141GO:0071281: cellular response to iron ion2.33E-02
142GO:0009734: auxin-activated signaling pathway2.33E-02
143GO:0009828: plant-type cell wall loosening2.44E-02
144GO:0016311: dephosphorylation3.22E-02
145GO:0009658: chloroplast organization3.42E-02
146GO:0009832: plant-type cell wall biogenesis3.46E-02
147GO:0010218: response to far red light3.58E-02
148GO:0045893: positive regulation of transcription, DNA-templated3.69E-02
149GO:0006865: amino acid transport3.82E-02
150GO:0045087: innate immune response3.95E-02
151GO:0009637: response to blue light3.95E-02
152GO:0034599: cellular response to oxidative stress4.07E-02
153GO:0006810: transport4.13E-02
154GO:0080167: response to karrikin4.23E-02
155GO:0009640: photomorphogenesis4.73E-02
156GO:0010114: response to red light4.73E-02
157GO:0009926: auxin polar transport4.73E-02
158GO:0009744: response to sucrose4.73E-02
159GO:0009644: response to high light intensity5.00E-02
RankGO TermAdjusted P value
1GO:0010301: xanthoxin dehydrogenase activity0.00E+00
2GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
3GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
4GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
5GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
6GO:0019843: rRNA binding2.95E-10
7GO:0005528: FK506 binding2.18E-08
8GO:0003755: peptidyl-prolyl cis-trans isomerase activity9.05E-06
9GO:0016788: hydrolase activity, acting on ester bonds3.30E-05
10GO:0004366: glycerol-3-phosphate O-acyltransferase activity7.90E-05
11GO:0015121: phosphoenolpyruvate:phosphate antiporter activity2.16E-04
12GO:0005080: protein kinase C binding2.16E-04
13GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.16E-04
14GO:0030794: (S)-coclaurine-N-methyltransferase activity2.16E-04
15GO:0052689: carboxylic ester hydrolase activity4.48E-04
16GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.81E-04
17GO:0047746: chlorophyllase activity4.81E-04
18GO:0003839: gamma-glutamylcyclotransferase activity4.81E-04
19GO:0004617: phosphoglycerate dehydrogenase activity4.81E-04
20GO:0004565: beta-galactosidase activity5.83E-04
21GO:0008266: poly(U) RNA binding6.57E-04
22GO:0045548: phenylalanine ammonia-lyase activity7.83E-04
23GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor7.83E-04
24GO:0016851: magnesium chelatase activity1.12E-03
25GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity1.12E-03
26GO:0043023: ribosomal large subunit binding1.12E-03
27GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.12E-03
28GO:0030570: pectate lyase activity1.29E-03
29GO:0010328: auxin influx transmembrane transporter activity1.48E-03
30GO:0052793: pectin acetylesterase activity1.48E-03
31GO:0042277: peptide binding1.48E-03
32GO:0004392: heme oxygenase (decyclizing) activity1.48E-03
33GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.48E-03
34GO:0015120: phosphoglycerate transmembrane transporter activity1.48E-03
35GO:0010011: auxin binding1.48E-03
36GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.48E-03
37GO:0016746: transferase activity, transferring acyl groups2.09E-03
38GO:0004130: cytochrome-c peroxidase activity2.33E-03
39GO:0016688: L-ascorbate peroxidase activity2.33E-03
40GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity2.33E-03
41GO:0016791: phosphatase activity2.62E-03
42GO:0004871: signal transducer activity2.67E-03
43GO:0033743: peptide-methionine (R)-S-oxide reductase activity2.80E-03
44GO:0004017: adenylate kinase activity2.80E-03
45GO:0016168: chlorophyll binding3.30E-03
46GO:0043022: ribosome binding3.82E-03
47GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.06E-03
48GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water4.38E-03
49GO:0003993: acid phosphatase activity5.38E-03
50GO:0005381: iron ion transmembrane transporter activity5.56E-03
51GO:0008168: methyltransferase activity6.68E-03
52GO:0003735: structural constituent of ribosome7.73E-03
53GO:0051287: NAD binding8.03E-03
54GO:0004022: alcohol dehydrogenase (NAD) activity8.22E-03
55GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.05E-02
56GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.05E-02
57GO:0031409: pigment binding1.05E-02
58GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.05E-02
59GO:0004176: ATP-dependent peptidase activity1.29E-02
60GO:0003729: mRNA binding1.40E-02
61GO:0022891: substrate-specific transmembrane transporter activity1.46E-02
62GO:0016829: lyase activity1.73E-02
63GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.83E-02
64GO:0008080: N-acetyltransferase activity1.83E-02
65GO:0005355: glucose transmembrane transporter activity1.93E-02
66GO:0050662: coenzyme binding1.93E-02
67GO:0004872: receptor activity2.02E-02
68GO:0004518: nuclease activity2.23E-02
69GO:0005200: structural constituent of cytoskeleton2.54E-02
70GO:0016597: amino acid binding2.65E-02
71GO:0015250: water channel activity2.76E-02
72GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.81E-02
73GO:0042802: identical protein binding2.81E-02
74GO:0008375: acetylglucosaminyltransferase activity2.99E-02
75GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.22E-02
76GO:0016491: oxidoreductase activity3.53E-02
77GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.58E-02
78GO:0004222: metalloendopeptidase activity3.58E-02
79GO:0003746: translation elongation factor activity3.95E-02
80GO:0004672: protein kinase activity4.13E-02
81GO:0051539: 4 iron, 4 sulfur cluster binding4.33E-02
82GO:0050661: NADP binding4.33E-02
83GO:0003723: RNA binding4.42E-02
84GO:0043621: protein self-association5.00E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0010240: plastid pyruvate dehydrogenase complex0.00E+00
3GO:0009507: chloroplast3.50E-35
4GO:0009535: chloroplast thylakoid membrane1.11E-23
5GO:0009534: chloroplast thylakoid6.22E-21
6GO:0009579: thylakoid3.36E-18
7GO:0009941: chloroplast envelope2.31E-17
8GO:0009543: chloroplast thylakoid lumen7.15E-15
9GO:0009570: chloroplast stroma8.82E-13
10GO:0031977: thylakoid lumen1.43E-10
11GO:0030095: chloroplast photosystem II6.41E-07
12GO:0005840: ribosome1.50E-04
13GO:0009523: photosystem II1.87E-04
14GO:0043674: columella2.16E-04
15GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.78E-04
16GO:0031969: chloroplast membrane3.73E-04
17GO:0030093: chloroplast photosystem I4.81E-04
18GO:0032040: small-subunit processome5.15E-04
19GO:0010007: magnesium chelatase complex7.83E-04
20GO:0015630: microtubule cytoskeleton1.12E-03
21GO:0016021: integral component of membrane2.18E-03
22GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.33E-03
23GO:0010287: plastoglobule2.50E-03
24GO:0042807: central vacuole3.30E-03
25GO:0009986: cell surface3.30E-03
26GO:0009533: chloroplast stromal thylakoid3.30E-03
27GO:0008180: COP9 signalosome4.95E-03
28GO:0016020: membrane6.44E-03
29GO:0009508: plastid chromosome8.22E-03
30GO:0000312: plastid small ribosomal subunit8.94E-03
31GO:0048046: apoplast9.17E-03
32GO:0030076: light-harvesting complex9.69E-03
33GO:0005618: cell wall1.10E-02
34GO:0009654: photosystem II oxygen evolving complex1.21E-02
35GO:0009522: photosystem I1.93E-02
36GO:0019898: extrinsic component of membrane2.02E-02
37GO:0009295: nucleoid2.54E-02
38GO:0010319: stromule2.54E-02
39GO:0030529: intracellular ribonucleoprotein complex2.76E-02
40GO:0009536: plastid3.19E-02
41GO:0009707: chloroplast outer membrane3.34E-02
42GO:0019005: SCF ubiquitin ligase complex3.34E-02
43GO:0015934: large ribosomal subunit3.70E-02
44GO:0005886: plasma membrane3.73E-02
45GO:0005576: extracellular region4.92E-02
Gene type



Gene DE type