Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G30935

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019484: beta-alanine catabolic process0.00E+00
2GO:0006480: N-terminal protein amino acid methylation0.00E+00
3GO:0010793: regulation of mRNA export from nucleus0.00E+00
4GO:0009448: gamma-aminobutyric acid metabolic process0.00E+00
5GO:0006105: succinate metabolic process0.00E+00
6GO:2001253: regulation of histone H3-K36 trimethylation0.00E+00
7GO:0006979: response to oxidative stress1.40E-05
8GO:0009865: pollen tube adhesion1.97E-05
9GO:0006540: glutamate decarboxylation to succinate1.97E-05
10GO:0009450: gamma-aminobutyric acid catabolic process1.97E-05
11GO:0010033: response to organic substance5.10E-05
12GO:0050684: regulation of mRNA processing5.10E-05
13GO:0032012: regulation of ARF protein signal transduction9.05E-05
14GO:0032784: regulation of DNA-templated transcription, elongation9.05E-05
15GO:0030029: actin filament-based process9.05E-05
16GO:0006020: inositol metabolic process1.36E-04
17GO:0033320: UDP-D-xylose biosynthetic process1.86E-04
18GO:0006536: glutamate metabolic process1.86E-04
19GO:0034314: Arp2/3 complex-mediated actin nucleation2.97E-04
20GO:0042732: D-xylose metabolic process2.97E-04
21GO:0010358: leaf shaping2.97E-04
22GO:0048280: vesicle fusion with Golgi apparatus3.57E-04
23GO:0046686: response to cadmium ion3.66E-04
24GO:0006333: chromatin assembly or disassembly4.19E-04
25GO:0046470: phosphatidylcholine metabolic process4.19E-04
26GO:0006972: hyperosmotic response5.50E-04
27GO:0000902: cell morphogenesis6.19E-04
28GO:0009051: pentose-phosphate shunt, oxidative branch6.19E-04
29GO:0006896: Golgi to vacuole transport7.62E-04
30GO:0009845: seed germination7.76E-04
31GO:0042744: hydrogen peroxide catabolic process8.14E-04
32GO:0018119: peptidyl-cysteine S-nitrosylation8.37E-04
33GO:0006006: glucose metabolic process9.90E-04
34GO:0030036: actin cytoskeleton organization9.90E-04
35GO:0007015: actin filament organization1.07E-03
36GO:0006446: regulation of translational initiation1.07E-03
37GO:0006541: glutamine metabolic process1.07E-03
38GO:0009225: nucleotide-sugar metabolic process1.15E-03
39GO:0009825: multidimensional cell growth1.15E-03
40GO:0005985: sucrose metabolic process1.15E-03
41GO:0034976: response to endoplasmic reticulum stress1.23E-03
42GO:2000377: regulation of reactive oxygen species metabolic process1.32E-03
43GO:0009695: jasmonic acid biosynthetic process1.41E-03
44GO:0048511: rhythmic process1.50E-03
45GO:0009789: positive regulation of abscisic acid-activated signaling pathway1.88E-03
46GO:0042147: retrograde transport, endosome to Golgi1.88E-03
47GO:0010501: RNA secondary structure unwinding1.98E-03
48GO:0010154: fruit development2.08E-03
49GO:0006623: protein targeting to vacuole2.29E-03
50GO:0010183: pollen tube guidance2.29E-03
51GO:0006891: intra-Golgi vesicle-mediated transport2.40E-03
52GO:0006635: fatty acid beta-oxidation2.40E-03
53GO:0009630: gravitropism2.50E-03
54GO:0010090: trichome morphogenesis2.61E-03
55GO:0006464: cellular protein modification process2.73E-03
56GO:0006888: ER to Golgi vesicle-mediated transport3.43E-03
57GO:0006499: N-terminal protein myristoylation3.93E-03
58GO:0010119: regulation of stomatal movement4.06E-03
59GO:0006631: fatty acid metabolic process4.86E-03
60GO:0009664: plant-type cell wall organization6.00E-03
61GO:0010224: response to UV-B6.46E-03
62GO:0048367: shoot system development7.24E-03
63GO:0051726: regulation of cell cycle8.39E-03
64GO:0009742: brassinosteroid mediated signaling pathway8.39E-03
65GO:0000398: mRNA splicing, via spliceosome8.90E-03
66GO:0010150: leaf senescence1.18E-02
67GO:0010468: regulation of gene expression1.34E-02
68GO:0009860: pollen tube growth1.70E-02
69GO:0007275: multicellular organism development1.88E-02
70GO:0045454: cell redox homeostasis2.13E-02
71GO:0016042: lipid catabolic process2.42E-02
72GO:0048364: root development2.55E-02
73GO:0009873: ethylene-activated signaling pathway2.97E-02
74GO:0055114: oxidation-reduction process3.27E-02
75GO:0009908: flower development3.47E-02
76GO:0009738: abscisic acid-activated signaling pathway3.64E-02
77GO:0009416: response to light stimulus3.72E-02
78GO:0006457: protein folding4.48E-02
79GO:0006511: ubiquitin-dependent protein catabolic process4.63E-02
RankGO TermAdjusted P value
1GO:0034387: 4-aminobutyrate:pyruvate transaminase activity0.00E+00
2GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity0.00E+00
3GO:0019707: protein-cysteine S-acyltransferase activity1.97E-05
4GO:0008692: 3-hydroxybutyryl-CoA epimerase activity1.97E-05
5GO:0003867: 4-aminobutyrate transaminase activity1.97E-05
6GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity5.10E-05
7GO:0030527: structural constituent of chromatin1.36E-04
8GO:0016656: monodehydroascorbate reductase (NADH) activity1.36E-04
9GO:0004165: dodecenoyl-CoA delta-isomerase activity1.36E-04
10GO:0004300: enoyl-CoA hydratase activity1.36E-04
11GO:0004345: glucose-6-phosphate dehydrogenase activity1.86E-04
12GO:0005086: ARF guanyl-nucleotide exchange factor activity1.86E-04
13GO:0005096: GTPase activator activity1.95E-04
14GO:0050897: cobalt ion binding2.16E-04
15GO:0005546: phosphatidylinositol-4,5-bisphosphate binding2.40E-04
16GO:0048040: UDP-glucuronate decarboxylase activity2.97E-04
17GO:0070403: NAD+ binding3.57E-04
18GO:0005085: guanyl-nucleotide exchange factor activity4.19E-04
19GO:0004620: phospholipase activity4.19E-04
20GO:0004869: cysteine-type endopeptidase inhibitor activity4.84E-04
21GO:0004630: phospholipase D activity5.50E-04
22GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity5.50E-04
23GO:0000166: nucleotide binding5.74E-04
24GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity6.90E-04
25GO:0003756: protein disulfide isomerase activity1.78E-03
26GO:0016853: isomerase activity2.18E-03
27GO:0004872: receptor activity2.29E-03
28GO:0005200: structural constituent of cytoskeleton2.84E-03
29GO:0004004: ATP-dependent RNA helicase activity3.43E-03
30GO:0000149: SNARE binding4.58E-03
31GO:0050661: NADP binding4.72E-03
32GO:0005484: SNAP receptor activity5.13E-03
33GO:0003779: actin binding7.89E-03
34GO:0008026: ATP-dependent helicase activity8.39E-03
35GO:0030170: pyridoxal phosphate binding1.01E-02
36GO:0003743: translation initiation factor activity1.32E-02
37GO:0004601: peroxidase activity1.61E-02
38GO:0003682: chromatin binding1.67E-02
39GO:0050660: flavin adenine dinucleotide binding1.78E-02
40GO:0003723: RNA binding1.84E-02
41GO:0003676: nucleic acid binding3.93E-02
42GO:0005507: copper ion binding4.79E-02
RankGO TermAdjusted P value
1GO:0005782: peroxisomal matrix9.05E-05
2GO:0030140: trans-Golgi network transport vesicle2.97E-04
3GO:0005885: Arp2/3 protein complex3.57E-04
4GO:0012507: ER to Golgi transport vesicle membrane4.84E-04
5GO:0030136: clathrin-coated vesicle1.88E-03
6GO:0005770: late endosome2.08E-03
7GO:0000785: chromatin2.50E-03
8GO:0005829: cytosol3.18E-03
9GO:0005788: endoplasmic reticulum lumen3.19E-03
10GO:0005783: endoplasmic reticulum3.54E-03
11GO:0000325: plant-type vacuole4.06E-03
12GO:0005737: cytoplasm4.84E-03
13GO:0031902: late endosome membrane4.86E-03
14GO:0031201: SNARE complex4.86E-03
15GO:0005777: peroxisome5.39E-03
16GO:0031966: mitochondrial membrane6.00E-03
17GO:0005774: vacuolar membrane6.56E-03
18GO:0005773: vacuole1.13E-02
19GO:0005618: cell wall3.78E-02
Gene type



Gene DE type