GO Enrichment Analysis of Co-expressed Genes with
AT4G30620
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 3 | GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate | 0.00E+00 |
| 4 | GO:0015995: chlorophyll biosynthetic process | 1.69E-07 |
| 5 | GO:0006353: DNA-templated transcription, termination | 9.09E-07 |
| 6 | GO:0090391: granum assembly | 2.99E-06 |
| 7 | GO:0010027: thylakoid membrane organization | 4.74E-06 |
| 8 | GO:0015979: photosynthesis | 1.01E-05 |
| 9 | GO:1901259: chloroplast rRNA processing | 4.63E-05 |
| 10 | GO:0009658: chloroplast organization | 5.09E-05 |
| 11 | GO:0010196: nonphotochemical quenching | 6.22E-05 |
| 12 | GO:0042255: ribosome assembly | 8.08E-05 |
| 13 | GO:0032544: plastid translation | 1.02E-04 |
| 14 | GO:0071482: cellular response to light stimulus | 1.02E-04 |
| 15 | GO:0043489: RNA stabilization | 1.25E-04 |
| 16 | GO:0042371: vitamin K biosynthetic process | 1.25E-04 |
| 17 | GO:0006352: DNA-templated transcription, initiation | 2.10E-04 |
| 18 | GO:0009451: RNA modification | 2.22E-04 |
| 19 | GO:0008616: queuosine biosynthetic process | 2.90E-04 |
| 20 | GO:0006568: tryptophan metabolic process | 2.90E-04 |
| 21 | GO:0007000: nucleolus organization | 2.90E-04 |
| 22 | GO:0006412: translation | 3.83E-04 |
| 23 | GO:0009735: response to cytokinin | 4.57E-04 |
| 24 | GO:0051211: anisotropic cell growth | 4.78E-04 |
| 25 | GO:0000280: nuclear division | 4.78E-04 |
| 26 | GO:0051604: protein maturation | 4.78E-04 |
| 27 | GO:0046168: glycerol-3-phosphate catabolic process | 4.78E-04 |
| 28 | GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition | 4.78E-04 |
| 29 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 6.28E-04 |
| 30 | GO:0009793: embryo development ending in seed dormancy | 6.44E-04 |
| 31 | GO:0006986: response to unfolded protein | 6.85E-04 |
| 32 | GO:2001141: regulation of RNA biosynthetic process | 6.85E-04 |
| 33 | GO:0009413: response to flooding | 6.85E-04 |
| 34 | GO:0051085: chaperone mediated protein folding requiring cofactor | 6.85E-04 |
| 35 | GO:0010239: chloroplast mRNA processing | 6.85E-04 |
| 36 | GO:0006072: glycerol-3-phosphate metabolic process | 6.85E-04 |
| 37 | GO:0071483: cellular response to blue light | 9.08E-04 |
| 38 | GO:0032502: developmental process | 1.11E-03 |
| 39 | GO:0010236: plastoquinone biosynthetic process | 1.15E-03 |
| 40 | GO:0045038: protein import into chloroplast thylakoid membrane | 1.15E-03 |
| 41 | GO:0007094: mitotic spindle assembly checkpoint | 1.15E-03 |
| 42 | GO:0009828: plant-type cell wall loosening | 1.25E-03 |
| 43 | GO:0042372: phylloquinone biosynthetic process | 1.68E-03 |
| 44 | GO:0048280: vesicle fusion with Golgi apparatus | 1.68E-03 |
| 45 | GO:0009772: photosynthetic electron transport in photosystem II | 1.98E-03 |
| 46 | GO:0006614: SRP-dependent cotranslational protein targeting to membrane | 1.98E-03 |
| 47 | GO:0048564: photosystem I assembly | 2.29E-03 |
| 48 | GO:0045292: mRNA cis splicing, via spliceosome | 2.29E-03 |
| 49 | GO:0009657: plastid organization | 2.61E-03 |
| 50 | GO:0030001: metal ion transport | 2.76E-03 |
| 51 | GO:0000373: Group II intron splicing | 2.95E-03 |
| 52 | GO:0010114: response to red light | 3.12E-03 |
| 53 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.31E-03 |
| 54 | GO:0031425: chloroplast RNA processing | 3.31E-03 |
| 55 | GO:0045036: protein targeting to chloroplast | 3.68E-03 |
| 56 | GO:0006949: syncytium formation | 3.68E-03 |
| 57 | GO:0006896: Golgi to vacuole transport | 3.68E-03 |
| 58 | GO:0006782: protoporphyrinogen IX biosynthetic process | 3.68E-03 |
| 59 | GO:0006457: protein folding | 3.80E-03 |
| 60 | GO:0009664: plant-type cell wall organization | 3.91E-03 |
| 61 | GO:0009073: aromatic amino acid family biosynthetic process | 4.06E-03 |
| 62 | GO:2000012: regulation of auxin polar transport | 4.86E-03 |
| 63 | GO:0090351: seedling development | 5.71E-03 |
| 64 | GO:0006629: lipid metabolic process | 5.75E-03 |
| 65 | GO:0006636: unsaturated fatty acid biosynthetic process | 6.15E-03 |
| 66 | GO:0051017: actin filament bundle assembly | 6.61E-03 |
| 67 | GO:0043622: cortical microtubule organization | 7.08E-03 |
| 68 | GO:0051321: meiotic cell cycle | 7.56E-03 |
| 69 | GO:0009790: embryo development | 8.71E-03 |
| 70 | GO:0042147: retrograde transport, endosome to Golgi | 9.60E-03 |
| 71 | GO:0080022: primary root development | 1.01E-02 |
| 72 | GO:0008033: tRNA processing | 1.01E-02 |
| 73 | GO:0007018: microtubule-based movement | 1.12E-02 |
| 74 | GO:0007059: chromosome segregation | 1.12E-02 |
| 75 | GO:0009739: response to gibberellin | 1.15E-02 |
| 76 | GO:0006623: protein targeting to vacuole | 1.18E-02 |
| 77 | GO:0008380: RNA splicing | 1.23E-02 |
| 78 | GO:0006891: intra-Golgi vesicle-mediated transport | 1.24E-02 |
| 79 | GO:0000910: cytokinesis | 1.54E-02 |
| 80 | GO:0009826: unidimensional cell growth | 1.54E-02 |
| 81 | GO:0042254: ribosome biogenesis | 1.63E-02 |
| 82 | GO:0009627: systemic acquired resistance | 1.74E-02 |
| 83 | GO:0006888: ER to Golgi vesicle-mediated transport | 1.81E-02 |
| 84 | GO:0080167: response to karrikin | 1.99E-02 |
| 85 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 2.05E-02 |
| 86 | GO:0007568: aging | 2.15E-02 |
| 87 | GO:0009631: cold acclimation | 2.15E-02 |
| 88 | GO:0045087: innate immune response | 2.30E-02 |
| 89 | GO:0009637: response to blue light | 2.30E-02 |
| 90 | GO:0045454: cell redox homeostasis | 2.38E-02 |
| 91 | GO:0006397: mRNA processing | 3.06E-02 |
| 92 | GO:0006364: rRNA processing | 3.40E-02 |
| 93 | GO:0051603: proteolysis involved in cellular protein catabolic process | 3.49E-02 |
| 94 | GO:0006508: proteolysis | 3.98E-02 |
| 95 | GO:0009740: gibberellic acid mediated signaling pathway | 4.19E-02 |
| 96 | GO:0009409: response to cold | 4.22E-02 |
| 97 | GO:0006396: RNA processing | 4.47E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0047661: amino-acid racemase activity | 0.00E+00 |
| 2 | GO:0005048: signal sequence binding | 0.00E+00 |
| 3 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 4 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 5 | GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity | 0.00E+00 |
| 6 | GO:0019843: rRNA binding | 3.59E-10 |
| 7 | GO:0016851: magnesium chelatase activity | 7.04E-06 |
| 8 | GO:0001053: plastid sigma factor activity | 1.33E-05 |
| 9 | GO:0016987: sigma factor activity | 1.33E-05 |
| 10 | GO:0003735: structural constituent of ribosome | 1.72E-05 |
| 11 | GO:0051087: chaperone binding | 1.91E-05 |
| 12 | GO:0003723: RNA binding | 1.03E-04 |
| 13 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.25E-04 |
| 14 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 1.25E-04 |
| 15 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.25E-04 |
| 16 | GO:0016630: protochlorophyllide reductase activity | 2.90E-04 |
| 17 | GO:0042389: omega-3 fatty acid desaturase activity | 2.90E-04 |
| 18 | GO:0008479: queuine tRNA-ribosyltransferase activity | 2.90E-04 |
| 19 | GO:0000774: adenyl-nucleotide exchange factor activity | 2.90E-04 |
| 20 | GO:0008266: poly(U) RNA binding | 3.14E-04 |
| 21 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 4.78E-04 |
| 22 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 4.78E-04 |
| 23 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 4.78E-04 |
| 24 | GO:0004176: ATP-dependent peptidase activity | 5.28E-04 |
| 25 | GO:0003727: single-stranded RNA binding | 6.80E-04 |
| 26 | GO:0048487: beta-tubulin binding | 6.85E-04 |
| 27 | GO:0004659: prenyltransferase activity | 9.08E-04 |
| 28 | GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed | 9.08E-04 |
| 29 | GO:0003729: mRNA binding | 9.62E-04 |
| 30 | GO:0003959: NADPH dehydrogenase activity | 1.15E-03 |
| 31 | GO:0008237: metallopeptidase activity | 1.32E-03 |
| 32 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 1.68E-03 |
| 33 | GO:0016831: carboxy-lyase activity | 1.98E-03 |
| 34 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 2.29E-03 |
| 35 | GO:0008312: 7S RNA binding | 2.29E-03 |
| 36 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 2.61E-03 |
| 37 | GO:0047617: acyl-CoA hydrolase activity | 3.31E-03 |
| 38 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.64E-03 |
| 39 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.20E-03 |
| 40 | GO:0003690: double-stranded DNA binding | 4.34E-03 |
| 41 | GO:0042803: protein homodimerization activity | 4.68E-03 |
| 42 | GO:0008081: phosphoric diester hydrolase activity | 4.86E-03 |
| 43 | GO:0051082: unfolded protein binding | 5.96E-03 |
| 44 | GO:0004519: endonuclease activity | 6.40E-03 |
| 45 | GO:0005528: FK506 binding | 6.61E-03 |
| 46 | GO:0016887: ATPase activity | 1.00E-02 |
| 47 | GO:0008080: N-acetyltransferase activity | 1.07E-02 |
| 48 | GO:0051015: actin filament binding | 1.36E-02 |
| 49 | GO:0008483: transaminase activity | 1.48E-02 |
| 50 | GO:0005507: copper ion binding | 1.87E-02 |
| 51 | GO:0008236: serine-type peptidase activity | 1.87E-02 |
| 52 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.94E-02 |
| 53 | GO:0004222: metalloendopeptidase activity | 2.08E-02 |
| 54 | GO:0003746: translation elongation factor activity | 2.30E-02 |
| 55 | GO:0000149: SNARE binding | 2.45E-02 |
| 56 | GO:0005509: calcium ion binding | 2.62E-02 |
| 57 | GO:0004185: serine-type carboxypeptidase activity | 2.75E-02 |
| 58 | GO:0005484: SNAP receptor activity | 2.75E-02 |
| 59 | GO:0043621: protein self-association | 2.91E-02 |
| 60 | GO:0003924: GTPase activity | 2.93E-02 |
| 61 | GO:0051287: NAD binding | 3.15E-02 |
| 62 | GO:0003777: microtubule motor activity | 3.66E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 4.31E-33 |
| 3 | GO:0009570: chloroplast stroma | 7.08E-25 |
| 4 | GO:0009579: thylakoid | 7.23E-17 |
| 5 | GO:0009941: chloroplast envelope | 1.51E-15 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 3.33E-10 |
| 7 | GO:0009534: chloroplast thylakoid | 8.49E-09 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 1.25E-08 |
| 9 | GO:0005840: ribosome | 1.23E-07 |
| 10 | GO:0031977: thylakoid lumen | 6.90E-07 |
| 11 | GO:0010007: magnesium chelatase complex | 2.99E-06 |
| 12 | GO:0009547: plastid ribosome | 1.25E-04 |
| 13 | GO:0080085: signal recognition particle, chloroplast targeting | 2.90E-04 |
| 14 | GO:0009654: photosystem II oxygen evolving complex | 4.81E-04 |
| 15 | GO:0009331: glycerol-3-phosphate dehydrogenase complex | 6.85E-04 |
| 16 | GO:0009526: plastid envelope | 9.08E-04 |
| 17 | GO:0005828: kinetochore microtubule | 9.08E-04 |
| 18 | GO:0019898: extrinsic component of membrane | 9.76E-04 |
| 19 | GO:0000776: kinetochore | 1.15E-03 |
| 20 | GO:0055035: plastid thylakoid membrane | 1.15E-03 |
| 21 | GO:0009295: nucleoid | 1.32E-03 |
| 22 | GO:0005759: mitochondrial matrix | 1.37E-03 |
| 23 | GO:0030529: intracellular ribonucleoprotein complex | 1.48E-03 |
| 24 | GO:0000777: condensed chromosome kinetochore | 1.68E-03 |
| 25 | GO:0012507: ER to Golgi transport vesicle membrane | 2.29E-03 |
| 26 | GO:0005786: signal recognition particle, endoplasmic reticulum targeting | 2.61E-03 |
| 27 | GO:0005876: spindle microtubule | 3.31E-03 |
| 28 | GO:0031969: chloroplast membrane | 3.51E-03 |
| 29 | GO:0090404: pollen tube tip | 4.06E-03 |
| 30 | GO:0000311: plastid large ribosomal subunit | 4.45E-03 |
| 31 | GO:0009508: plastid chromosome | 4.86E-03 |
| 32 | GO:0030095: chloroplast photosystem II | 5.28E-03 |
| 33 | GO:0043231: intracellular membrane-bounded organelle | 6.51E-03 |
| 34 | GO:0042651: thylakoid membrane | 7.08E-03 |
| 35 | GO:0015629: actin cytoskeleton | 8.56E-03 |
| 36 | GO:0005871: kinesin complex | 9.60E-03 |
| 37 | GO:0009536: plastid | 1.02E-02 |
| 38 | GO:0009523: photosystem II | 1.18E-02 |
| 39 | GO:0005874: microtubule | 1.92E-02 |
| 40 | GO:0009707: chloroplast outer membrane | 1.94E-02 |
| 41 | GO:0005618: cell wall | 2.01E-02 |
| 42 | GO:0031902: late endosome membrane | 2.60E-02 |
| 43 | GO:0031201: SNARE complex | 2.60E-02 |
| 44 | GO:0005856: cytoskeleton | 2.99E-02 |
| 45 | GO:0009706: chloroplast inner membrane | 4.37E-02 |
| 46 | GO:0010287: plastoglobule | 4.94E-02 |