GO Enrichment Analysis of Co-expressed Genes with
AT4G30580
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 2 | GO:0015805: S-adenosyl-L-methionine transport | 0.00E+00 |
| 3 | GO:2000505: regulation of energy homeostasis | 0.00E+00 |
| 4 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 5 | GO:0015979: photosynthesis | 2.32E-08 |
| 6 | GO:0009773: photosynthetic electron transport in photosystem I | 3.92E-06 |
| 7 | GO:0009735: response to cytokinin | 5.79E-05 |
| 8 | GO:0006353: DNA-templated transcription, termination | 7.29E-05 |
| 9 | GO:0010027: thylakoid membrane organization | 1.06E-04 |
| 10 | GO:0010206: photosystem II repair | 1.14E-04 |
| 11 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.18E-04 |
| 12 | GO:1904964: positive regulation of phytol biosynthetic process | 1.18E-04 |
| 13 | GO:0015995: chlorophyll biosynthetic process | 1.34E-04 |
| 14 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.73E-04 |
| 15 | GO:0034755: iron ion transmembrane transport | 2.73E-04 |
| 16 | GO:0010115: regulation of abscisic acid biosynthetic process | 2.73E-04 |
| 17 | GO:0001736: establishment of planar polarity | 2.73E-04 |
| 18 | GO:0010024: phytochromobilin biosynthetic process | 2.73E-04 |
| 19 | GO:0010207: photosystem II assembly | 2.87E-04 |
| 20 | GO:0006788: heme oxidation | 4.52E-04 |
| 21 | GO:0090391: granum assembly | 4.52E-04 |
| 22 | GO:0009306: protein secretion | 6.25E-04 |
| 23 | GO:0080170: hydrogen peroxide transmembrane transport | 6.47E-04 |
| 24 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 6.47E-04 |
| 25 | GO:0071484: cellular response to light intensity | 6.47E-04 |
| 26 | GO:0010239: chloroplast mRNA processing | 6.47E-04 |
| 27 | GO:0042335: cuticle development | 7.29E-04 |
| 28 | GO:0030104: water homeostasis | 8.60E-04 |
| 29 | GO:0045727: positive regulation of translation | 8.60E-04 |
| 30 | GO:0009913: epidermal cell differentiation | 1.33E-03 |
| 31 | GO:0006561: proline biosynthetic process | 1.33E-03 |
| 32 | GO:0006751: glutathione catabolic process | 1.33E-03 |
| 33 | GO:0042549: photosystem II stabilization | 1.33E-03 |
| 34 | GO:1901259: chloroplast rRNA processing | 1.59E-03 |
| 35 | GO:0017148: negative regulation of translation | 1.59E-03 |
| 36 | GO:0010196: nonphotochemical quenching | 1.87E-03 |
| 37 | GO:1900057: positive regulation of leaf senescence | 1.87E-03 |
| 38 | GO:0010444: guard mother cell differentiation | 1.87E-03 |
| 39 | GO:0009772: photosynthetic electron transport in photosystem II | 1.87E-03 |
| 40 | GO:0006865: amino acid transport | 2.13E-03 |
| 41 | GO:0042255: ribosome assembly | 2.16E-03 |
| 42 | GO:0006605: protein targeting | 2.16E-03 |
| 43 | GO:0048564: photosystem I assembly | 2.16E-03 |
| 44 | GO:0009416: response to light stimulus | 2.24E-03 |
| 45 | GO:0042254: ribosome biogenesis | 2.45E-03 |
| 46 | GO:0032544: plastid translation | 2.46E-03 |
| 47 | GO:0009245: lipid A biosynthetic process | 2.78E-03 |
| 48 | GO:0010205: photoinhibition | 3.12E-03 |
| 49 | GO:0009638: phototropism | 3.12E-03 |
| 50 | GO:0009688: abscisic acid biosynthetic process | 3.46E-03 |
| 51 | GO:0048829: root cap development | 3.46E-03 |
| 52 | GO:0006879: cellular iron ion homeostasis | 3.82E-03 |
| 53 | GO:0009750: response to fructose | 3.82E-03 |
| 54 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.82E-03 |
| 55 | GO:0048765: root hair cell differentiation | 3.82E-03 |
| 56 | GO:0006364: rRNA processing | 3.84E-03 |
| 57 | GO:0016024: CDP-diacylglycerol biosynthetic process | 4.19E-03 |
| 58 | GO:0010588: cotyledon vascular tissue pattern formation | 4.57E-03 |
| 59 | GO:0009785: blue light signaling pathway | 4.57E-03 |
| 60 | GO:0010628: positive regulation of gene expression | 4.57E-03 |
| 61 | GO:0010143: cutin biosynthetic process | 4.97E-03 |
| 62 | GO:0006636: unsaturated fatty acid biosynthetic process | 5.79E-03 |
| 63 | GO:0007017: microtubule-based process | 6.66E-03 |
| 64 | GO:0003333: amino acid transmembrane transport | 7.11E-03 |
| 65 | GO:0048511: rhythmic process | 7.11E-03 |
| 66 | GO:0042127: regulation of cell proliferation | 8.53E-03 |
| 67 | GO:0006633: fatty acid biosynthetic process | 8.58E-03 |
| 68 | GO:0080022: primary root development | 9.53E-03 |
| 69 | GO:0008033: tRNA processing | 9.53E-03 |
| 70 | GO:0034220: ion transmembrane transport | 9.53E-03 |
| 71 | GO:0010087: phloem or xylem histogenesis | 9.53E-03 |
| 72 | GO:0010305: leaf vascular tissue pattern formation | 1.00E-02 |
| 73 | GO:0009958: positive gravitropism | 1.00E-02 |
| 74 | GO:0010182: sugar mediated signaling pathway | 1.00E-02 |
| 75 | GO:0015986: ATP synthesis coupled proton transport | 1.06E-02 |
| 76 | GO:0042752: regulation of circadian rhythm | 1.06E-02 |
| 77 | GO:0048825: cotyledon development | 1.11E-02 |
| 78 | GO:0016032: viral process | 1.22E-02 |
| 79 | GO:0032502: developmental process | 1.22E-02 |
| 80 | GO:0009658: chloroplast organization | 1.46E-02 |
| 81 | GO:0009627: systemic acquired resistance | 1.63E-02 |
| 82 | GO:0018298: protein-chromophore linkage | 1.82E-02 |
| 83 | GO:0010311: lateral root formation | 1.89E-02 |
| 84 | GO:0006839: mitochondrial transport | 2.37E-02 |
| 85 | GO:0030001: metal ion transport | 2.37E-02 |
| 86 | GO:0032259: methylation | 2.57E-02 |
| 87 | GO:0009926: auxin polar transport | 2.59E-02 |
| 88 | GO:0006855: drug transmembrane transport | 2.88E-02 |
| 89 | GO:0048316: seed development | 3.68E-02 |
| 90 | GO:0048367: shoot system development | 3.68E-02 |
| 91 | GO:0009734: auxin-activated signaling pathway | 3.77E-02 |
| 92 | GO:0009624: response to nematode | 4.11E-02 |
| 93 | GO:0051726: regulation of cell cycle | 4.28E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 2 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 4 | GO:0005528: FK506 binding | 2.10E-07 |
| 5 | GO:0016851: magnesium chelatase activity | 6.29E-06 |
| 6 | GO:0019843: rRNA binding | 6.75E-06 |
| 7 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 2.66E-05 |
| 8 | GO:0045485: omega-6 fatty acid desaturase activity | 1.18E-04 |
| 9 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 1.18E-04 |
| 10 | GO:0003839: gamma-glutamylcyclotransferase activity | 2.73E-04 |
| 11 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 2.73E-04 |
| 12 | GO:0090729: toxin activity | 4.52E-04 |
| 13 | GO:0043023: ribosomal large subunit binding | 6.47E-04 |
| 14 | GO:0001872: (1->3)-beta-D-glucan binding | 6.47E-04 |
| 15 | GO:0010328: auxin influx transmembrane transporter activity | 8.60E-04 |
| 16 | GO:0043495: protein anchor | 8.60E-04 |
| 17 | GO:0004392: heme oxygenase (decyclizing) activity | 8.60E-04 |
| 18 | GO:0010011: auxin binding | 8.60E-04 |
| 19 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.33E-03 |
| 20 | GO:0031177: phosphopantetheine binding | 1.33E-03 |
| 21 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.33E-03 |
| 22 | GO:0004017: adenylate kinase activity | 1.59E-03 |
| 23 | GO:0000035: acyl binding | 1.59E-03 |
| 24 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.77E-03 |
| 25 | GO:0019899: enzyme binding | 1.87E-03 |
| 26 | GO:0043022: ribosome binding | 2.16E-03 |
| 27 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 2.16E-03 |
| 28 | GO:0005381: iron ion transmembrane transporter activity | 3.12E-03 |
| 29 | GO:0004871: signal transducer activity | 4.18E-03 |
| 30 | GO:0015171: amino acid transmembrane transporter activity | 4.25E-03 |
| 31 | GO:0004022: alcohol dehydrogenase (NAD) activity | 4.57E-03 |
| 32 | GO:0031072: heat shock protein binding | 4.57E-03 |
| 33 | GO:0008266: poly(U) RNA binding | 4.97E-03 |
| 34 | GO:0005509: calcium ion binding | 5.79E-03 |
| 35 | GO:0030570: pectate lyase activity | 8.05E-03 |
| 36 | GO:0022891: substrate-specific transmembrane transporter activity | 8.05E-03 |
| 37 | GO:0003756: protein disulfide isomerase activity | 8.53E-03 |
| 38 | GO:0003727: single-stranded RNA binding | 8.53E-03 |
| 39 | GO:0016491: oxidoreductase activity | 9.94E-03 |
| 40 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.00E-02 |
| 41 | GO:0050662: coenzyme binding | 1.06E-02 |
| 42 | GO:0042802: identical protein binding | 1.20E-02 |
| 43 | GO:0016791: phosphatase activity | 1.33E-02 |
| 44 | GO:0005200: structural constituent of cytoskeleton | 1.39E-02 |
| 45 | GO:0016788: hydrolase activity, acting on ester bonds | 1.49E-02 |
| 46 | GO:0015250: water channel activity | 1.51E-02 |
| 47 | GO:0016168: chlorophyll binding | 1.57E-02 |
| 48 | GO:0030247: polysaccharide binding | 1.70E-02 |
| 49 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 1.96E-02 |
| 50 | GO:0005525: GTP binding | 2.00E-02 |
| 51 | GO:0003746: translation elongation factor activity | 2.16E-02 |
| 52 | GO:0005515: protein binding | 2.72E-02 |
| 53 | GO:0043621: protein self-association | 2.73E-02 |
| 54 | GO:0015293: symporter activity | 2.81E-02 |
| 55 | GO:0009055: electron carrier activity | 2.88E-02 |
| 56 | GO:0003690: double-stranded DNA binding | 3.28E-02 |
| 57 | GO:0003777: microtubule motor activity | 3.44E-02 |
| 58 | GO:0051082: unfolded protein binding | 4.11E-02 |
| 59 | GO:0016887: ATPase activity | 4.14E-02 |
| 60 | GO:0016746: transferase activity, transferring acyl groups | 4.19E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.42E-26 |
| 2 | GO:0009579: thylakoid | 3.52E-17 |
| 3 | GO:0009543: chloroplast thylakoid lumen | 3.93E-17 |
| 4 | GO:0031977: thylakoid lumen | 7.51E-16 |
| 5 | GO:0009570: chloroplast stroma | 1.41E-14 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 5.68E-14 |
| 7 | GO:0009534: chloroplast thylakoid | 6.84E-13 |
| 8 | GO:0009941: chloroplast envelope | 1.80E-11 |
| 9 | GO:0009654: photosystem II oxygen evolving complex | 2.66E-07 |
| 10 | GO:0019898: extrinsic component of membrane | 1.47E-06 |
| 11 | GO:0010007: magnesium chelatase complex | 2.67E-06 |
| 12 | GO:0030095: chloroplast photosystem II | 7.86E-06 |
| 13 | GO:0009515: granal stacked thylakoid | 1.18E-04 |
| 14 | GO:0043674: columella | 1.18E-04 |
| 15 | GO:0030093: chloroplast photosystem I | 2.73E-04 |
| 16 | GO:0042651: thylakoid membrane | 4.41E-04 |
| 17 | GO:0015630: microtubule cytoskeleton | 6.47E-04 |
| 18 | GO:0009295: nucleoid | 1.22E-03 |
| 19 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.33E-03 |
| 20 | GO:0042807: central vacuole | 1.87E-03 |
| 21 | GO:0009986: cell surface | 1.87E-03 |
| 22 | GO:0008180: COP9 signalosome | 2.78E-03 |
| 23 | GO:0009508: plastid chromosome | 4.57E-03 |
| 24 | GO:0010287: plastoglobule | 6.47E-03 |
| 25 | GO:0005840: ribosome | 7.03E-03 |
| 26 | GO:0009523: photosystem II | 1.11E-02 |
| 27 | GO:0010319: stromule | 1.39E-02 |
| 28 | GO:0019005: SCF ubiquitin ligase complex | 1.82E-02 |
| 29 | GO:0031969: chloroplast membrane | 1.82E-02 |
| 30 | GO:0016020: membrane | 2.46E-02 |
| 31 | GO:0000502: proteasome complex | 3.20E-02 |
| 32 | GO:0009706: chloroplast inner membrane | 4.11E-02 |