co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30410

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:0090627: plant epidermal cell differentiation	0.00E+00
3	GO:0042493: response to drug	0.00E+00
4	GO:0009913: epidermal cell differentiation	2.95E-07
5	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	4.14E-05
6	GO:0010196: nonphotochemical quenching	7.88E-05
7	GO:0009735: response to cytokinin	1.20E-04
8	GO:0009828: plant-type cell wall loosening	1.25E-04
9	GO:0043489: RNA stabilization	1.46E-04
10	GO:0071588: hydrogen peroxide mediated signaling pathway	1.46E-04
11	GO:0015979: photosynthesis	1.65E-04
12	GO:0015995: chlorophyll biosynthetic process	2.03E-04
13	GO:0045490: pectin catabolic process	3.00E-04
14	GO:0043255: regulation of carbohydrate biosynthetic process	3.33E-04
15	GO:0001736: establishment of planar polarity	3.33E-04
16	GO:0090391: granum assembly	5.47E-04
17	GO:0080055: low-affinity nitrate transport	5.47E-04
18	GO:0009664: plant-type cell wall organization	5.96E-04
19	GO:0009650: UV protection	7.83E-04
20	GO:1901332: negative regulation of lateral root development	7.83E-04
21	GO:0071484: cellular response to light intensity	7.83E-04
22	GO:0010239: chloroplast mRNA processing	7.83E-04
23	GO:0080170: hydrogen peroxide transmembrane transport	7.83E-04
24	GO:0034220: ion transmembrane transport	9.62E-04
25	GO:0042335: cuticle development	9.62E-04
26	GO:0009624: response to nematode	1.01E-03
27	GO:0030104: water homeostasis	1.04E-03
28	GO:0045727: positive regulation of translation	1.04E-03
29	GO:0048825: cotyledon development	1.19E-03
30	GO:0006564: L-serine biosynthetic process	1.31E-03
31	GO:0048497: maintenance of floral organ identity	1.31E-03
32	GO:0010438: cellular response to sulfur starvation	1.31E-03
33	GO:0030308: negative regulation of cell growth	1.31E-03
34	GO:0016042: lipid catabolic process	1.41E-03
35	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.61E-03
36	GO:0010337: regulation of salicylic acid metabolic process	1.61E-03
37	GO:0009759: indole glucosinolate biosynthetic process	1.61E-03
38	GO:0042549: photosystem II stabilization	1.61E-03
39	GO:0010027: thylakoid membrane organization	1.81E-03
40	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.93E-03
41	GO:0010019: chloroplast-nucleus signaling pathway	1.93E-03
42	GO:1901259: chloroplast rRNA processing	1.93E-03
43	GO:1900057: positive regulation of leaf senescence	2.27E-03
44	GO:0010444: guard mother cell differentiation	2.27E-03
45	GO:0006400: tRNA modification	2.27E-03
46	GO:0009772: photosynthetic electron transport in photosystem II	2.27E-03
47	GO:0010311: lateral root formation	2.47E-03
48	GO:0009734: auxin-activated signaling pathway	2.48E-03
49	GO:0006605: protein targeting	2.63E-03
50	GO:0008610: lipid biosynthetic process	2.63E-03
51	GO:0006353: DNA-templated transcription, termination	2.63E-03
52	GO:0009631: cold acclimation	2.72E-03
53	GO:0032544: plastid translation	3.00E-03
54	GO:0009733: response to auxin	3.25E-03
55	GO:0009826: unidimensional cell growth	3.31E-03
56	GO:0010206: photosystem II repair	3.40E-03
57	GO:0034765: regulation of ion transmembrane transport	3.40E-03
58	GO:0009416: response to light stimulus	3.52E-03
59	GO:0042254: ribosome biogenesis	3.56E-03
60	GO:0009299: mRNA transcription	4.23E-03
61	GO:0006032: chitin catabolic process	4.23E-03
62	GO:0048829: root cap development	4.23E-03
63	GO:0006949: syncytium formation	4.23E-03
64	GO:0045893: positive regulation of transcription, DNA-templated	4.34E-03
65	GO:0018119: peptidyl-cysteine S-nitrosylation	4.67E-03
66	GO:0048765: root hair cell differentiation	4.67E-03
67	GO:0000038: very long-chain fatty acid metabolic process	4.67E-03
68	GO:0009773: photosynthetic electron transport in photosystem I	4.67E-03
69	GO:0002213: defense response to insect	5.13E-03
70	GO:0016024: CDP-diacylglycerol biosynthetic process	5.13E-03
71	GO:0009809: lignin biosynthetic process	5.15E-03
72	GO:0009718: anthocyanin-containing compound biosynthetic process	5.60E-03
73	GO:0010102: lateral root morphogenesis	5.60E-03
74	GO:0010207: photosystem II assembly	6.09E-03
75	GO:0010143: cutin biosynthetic process	6.09E-03
76	GO:0010053: root epidermal cell differentiation	6.59E-03
77	GO:0009825: multidimensional cell growth	6.59E-03
78	GO:0010167: response to nitrate	6.59E-03
79	GO:0010025: wax biosynthetic process	7.10E-03
80	GO:0006833: water transport	7.10E-03
81	GO:0000162: tryptophan biosynthetic process	7.10E-03
82	GO:0009753: response to jasmonic acid	8.18E-03
83	GO:0019953: sexual reproduction	8.18E-03
84	GO:0007017: microtubule-based process	8.18E-03
85	GO:0003333: amino acid transmembrane transport	8.73E-03
86	GO:0016998: cell wall macromolecule catabolic process	8.73E-03
87	GO:0030245: cellulose catabolic process	9.30E-03
88	GO:0035428: hexose transmembrane transport	9.30E-03
89	GO:0009411: response to UV	9.89E-03
90	GO:0009845: seed germination	9.93E-03
91	GO:0042744: hydrogen peroxide catabolic process	1.04E-02
92	GO:0042127: regulation of cell proliferation	1.05E-02
93	GO:0009306: protein secretion	1.05E-02
94	GO:0006284: base-excision repair	1.05E-02
95	GO:0006633: fatty acid biosynthetic process	1.15E-02
96	GO:0080022: primary root development	1.17E-02
97	GO:0042391: regulation of membrane potential	1.17E-02
98	GO:0009958: positive gravitropism	1.24E-02
99	GO:0046323: glucose import	1.24E-02
100	GO:0015986: ATP synthesis coupled proton transport	1.30E-02
101	GO:0009451: RNA modification	1.30E-02
102	GO:0009739: response to gibberellin	1.42E-02
103	GO:0000302: response to reactive oxygen species	1.43E-02
104	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.43E-02
105	GO:0016032: viral process	1.50E-02
106	GO:0009630: gravitropism	1.50E-02
107	GO:0009409: response to cold	1.62E-02
108	GO:0006412: translation	1.68E-02
109	GO:0071805: potassium ion transmembrane transport	1.72E-02
110	GO:0048573: photoperiodism, flowering	2.09E-02
111	GO:0030244: cellulose biosynthetic process	2.25E-02
112	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.53E-02
113	GO:0006865: amino acid transport	2.58E-02
114	GO:0045087: innate immune response	2.66E-02
115	GO:0009637: response to blue light	2.66E-02
116	GO:0034599: cellular response to oxidative stress	2.75E-02
117	GO:0010114: response to red light	3.19E-02
118	GO:0009926: auxin polar transport	3.19E-02
119	GO:0006869: lipid transport	3.20E-02
120	GO:0006855: drug transmembrane transport	3.56E-02
121	GO:0006281: DNA repair	3.60E-02
122	GO:0016310: phosphorylation	3.89E-02
123	GO:0006364: rRNA processing	3.94E-02
124	GO:0008152: metabolic process	3.96E-02
125	GO:0006857: oligopeptide transport	4.14E-02
126	GO:0006096: glycolytic process	4.44E-02
127	GO:0048316: seed development	4.54E-02
128	GO:0009740: gibberellic acid mediated signaling pathway	4.85E-02
129	GO:0042545: cell wall modification	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
2	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
3	GO:0019843: rRNA binding	1.40E-05
4	GO:0005528: FK506 binding	2.25E-05
5	GO:0030570: pectate lyase activity	4.14E-05
6	GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity	1.46E-04
7	GO:0004617: phosphoglycerate dehydrogenase activity	3.33E-04
8	GO:0008266: poly(U) RNA binding	3.85E-04
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	5.44E-04
10	GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity	5.47E-04
11	GO:0080054: low-affinity nitrate transmembrane transporter activity	5.47E-04
12	GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity	5.47E-04
13	GO:0016788: hydrolase activity, acting on ester bonds	6.11E-04
14	GO:0016851: magnesium chelatase activity	7.83E-04
15	GO:0052689: carboxylic ester hydrolase activity	9.55E-04
16	GO:0010011: auxin binding	1.04E-03
17	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.04E-03
18	GO:0010328: auxin influx transmembrane transporter activity	1.04E-03
19	GO:0016746: transferase activity, transferring acyl groups	1.05E-03
20	GO:0008725: DNA-3-methyladenine glycosylase activity	1.31E-03
21	GO:0016829: lyase activity	1.47E-03
22	GO:0016688: L-ascorbate peroxidase activity	1.61E-03
23	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	1.61E-03
24	GO:0004130: cytochrome-c peroxidase activity	1.61E-03
25	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	1.61E-03
26	GO:0016597: amino acid binding	1.71E-03
27	GO:0015250: water channel activity	1.81E-03
28	GO:0005242: inward rectifier potassium channel activity	1.93E-03
29	GO:0003735: structural constituent of ribosome	2.58E-03
30	GO:0052747: sinapyl alcohol dehydrogenase activity	2.63E-03
31	GO:0047617: acyl-CoA hydrolase activity	3.81E-03
32	GO:0004568: chitinase activity	4.23E-03
33	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.13E-03
34	GO:0004565: beta-galactosidase activity	5.60E-03
35	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	7.10E-03
36	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	7.10E-03
37	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	7.10E-03
38	GO:0004176: ATP-dependent peptidase activity	8.73E-03
39	GO:0008810: cellulase activity	9.89E-03
40	GO:0008289: lipid binding	1.14E-02
41	GO:0005249: voltage-gated potassium channel activity	1.17E-02
42	GO:0030551: cyclic nucleotide binding	1.17E-02
43	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.24E-02
44	GO:0005355: glucose transmembrane transporter activity	1.30E-02
45	GO:0050662: coenzyme binding	1.30E-02
46	GO:0004518: nuclease activity	1.50E-02
47	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.61E-02
48	GO:0042802: identical protein binding	1.61E-02
49	GO:0016791: phosphatase activity	1.64E-02
50	GO:0005200: structural constituent of cytoskeleton	1.72E-02
51	GO:0003729: mRNA binding	1.87E-02
52	GO:0030247: polysaccharide binding	2.09E-02
53	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.20E-02
54	GO:0030246: carbohydrate binding	2.25E-02
55	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.25E-02
56	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.41E-02
57	GO:0051539: 4 iron, 4 sulfur cluster binding	2.92E-02
58	GO:0043621: protein self-association	3.37E-02
59	GO:0015293: symporter activity	3.47E-02
60	GO:0051287: NAD binding	3.65E-02
61	GO:0016298: lipase activity	4.04E-02
62	GO:0015171: amino acid transmembrane transporter activity	4.24E-02
63	GO:0045330: aspartyl esterase activity	4.24E-02
64	GO:0030599: pectinesterase activity	4.85E-02
65	GO:0022857: transmembrane transporter activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0010240: plastid pyruvate dehydrogenase complex	0.00E+00
2	GO:0009579: thylakoid	8.25E-11
3	GO:0009507: chloroplast	1.13E-10
4	GO:0009534: chloroplast thylakoid	1.50E-09
5	GO:0009543: chloroplast thylakoid lumen	2.63E-08
6	GO:0009941: chloroplast envelope	1.29E-07
7	GO:0009570: chloroplast stroma	1.34E-07
8	GO:0009535: chloroplast thylakoid membrane	1.22E-06
9	GO:0030095: chloroplast photosystem II	1.29E-05
10	GO:0005618: cell wall	1.63E-05
11	GO:0009515: granal stacked thylakoid	1.46E-04
12	GO:0043674: columella	1.46E-04
13	GO:0008180: COP9 signalosome	1.56E-04
14	GO:0016020: membrane	2.97E-04
15	GO:0031977: thylakoid lumen	4.02E-04
16	GO:0010007: magnesium chelatase complex	5.47E-04
17	GO:0009654: photosystem II oxygen evolving complex	5.87E-04
18	GO:0015630: microtubule cytoskeleton	7.83E-04
19	GO:0048046: apoplast	8.62E-04
20	GO:0019898: extrinsic component of membrane	1.19E-03
21	GO:0005576: extracellular region	1.34E-03
22	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	1.61E-03
23	GO:0042807: central vacuole	2.27E-03
24	GO:0009986: cell surface	2.27E-03
25	GO:0019005: SCF ubiquitin ligase complex	2.36E-03
26	GO:0005840: ribosome	2.88E-03
27	GO:0009505: plant-type cell wall	3.94E-03
28	GO:0005886: plasma membrane	4.07E-03
29	GO:0000502: proteasome complex	5.15E-03
30	GO:0005578: proteinaceous extracellular matrix	5.60E-03
31	GO:0000312: plastid small ribosomal subunit	6.09E-03
32	GO:0010287: plastoglobule	8.69E-03
33	GO:0005887: integral component of plasma membrane	1.10E-02
34	GO:0009523: photosystem II	1.37E-02
35	GO:0010319: stromule	1.72E-02
36	GO:0009295: nucleoid	1.72E-02
37	GO:0030529: intracellular ribonucleoprotein complex	1.86E-02
38	GO:0031969: chloroplast membrane	2.44E-02
39	GO:0009506: plasmodesma	4.14E-02