co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G30360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
2	GO:0080056: petal vascular tissue pattern formation	0.00E+00
3	GO:0000390: spliceosomal complex disassembly	0.00E+00
4	GO:0006105: succinate metabolic process	0.00E+00
5	GO:0019484: beta-alanine catabolic process	0.00E+00
6	GO:0043171: peptide catabolic process	0.00E+00
7	GO:0080057: sepal vascular tissue pattern formation	0.00E+00
8	GO:0060213: positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	0.00E+00
9	GO:0010378: temperature compensation of the circadian clock	0.00E+00
10	GO:0000478: endonucleolytic cleavage involved in rRNA processing	0.00E+00
11	GO:0010398: xylogalacturonan metabolic process	0.00E+00
12	GO:0042344: indole glucosinolate catabolic process	1.11E-05
13	GO:0052544: defense response by callose deposition in cell wall	2.49E-05
14	GO:0009409: response to cold	3.32E-05
15	GO:0000380: alternative mRNA splicing, via spliceosome	7.21E-05
16	GO:0045087: innate immune response	9.85E-05
17	GO:0009415: response to water	2.41E-04
18	GO:0048544: recognition of pollen	2.41E-04
19	GO:0009450: gamma-aminobutyric acid catabolic process	2.57E-04
20	GO:0007292: female gamete generation	2.57E-04
21	GO:1990641: response to iron ion starvation	2.57E-04
22	GO:0010184: cytokinin transport	2.57E-04
23	GO:1902265: abscisic acid homeostasis	2.57E-04
24	GO:0009865: pollen tube adhesion	2.57E-04
25	GO:0071366: cellular response to indolebutyric acid stimulus	2.57E-04
26	GO:0006540: glutamate decarboxylation to succinate	2.57E-04
27	GO:0031338: regulation of vesicle fusion	2.57E-04
28	GO:0000291: nuclear-transcribed mRNA catabolic process, exonucleolytic	2.57E-04
29	GO:0046167: glycerol-3-phosphate biosynthetic process	2.57E-04
30	GO:0035266: meristem growth	2.57E-04
31	GO:0010033: response to organic substance	5.68E-04
32	GO:0006641: triglyceride metabolic process	5.68E-04
33	GO:0009727: detection of ethylene stimulus	5.68E-04
34	GO:0006101: citrate metabolic process	5.68E-04
35	GO:0051788: response to misfolded protein	5.68E-04
36	GO:0045948: positive regulation of translational initiation	5.68E-04
37	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	5.68E-04
38	GO:0080167: response to karrikin	5.95E-04
39	GO:0009651: response to salt stress	6.50E-04
40	GO:0010119: regulation of stomatal movement	7.97E-04
41	GO:0002237: response to molecule of bacterial origin	8.40E-04
42	GO:0042256: mature ribosome assembly	9.22E-04
43	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	9.22E-04
44	GO:0060968: regulation of gene silencing	9.22E-04
45	GO:0006954: inflammatory response	9.22E-04
46	GO:0019563: glycerol catabolic process	9.22E-04
47	GO:1900140: regulation of seedling development	9.22E-04
48	GO:0090630: activation of GTPase activity	9.22E-04
49	GO:0042542: response to hydrogen peroxide	1.16E-03
50	GO:0006020: inositol metabolic process	1.32E-03
51	GO:0070301: cellular response to hydrogen peroxide	1.32E-03
52	GO:0010601: positive regulation of auxin biosynthetic process	1.32E-03
53	GO:0009113: purine nucleobase biosynthetic process	1.32E-03
54	GO:0006072: glycerol-3-phosphate metabolic process	1.32E-03
55	GO:0015749: monosaccharide transport	1.32E-03
56	GO:0009399: nitrogen fixation	1.32E-03
57	GO:0009963: positive regulation of flavonoid biosynthetic process	1.32E-03
58	GO:0006882: cellular zinc ion homeostasis	1.32E-03
59	GO:0009737: response to abscisic acid	1.72E-03
60	GO:0015743: malate transport	1.76E-03
61	GO:0006536: glutamate metabolic process	1.76E-03
62	GO:0042273: ribosomal large subunit biogenesis	1.76E-03
63	GO:0010188: response to microbial phytotoxin	1.76E-03
64	GO:0006878: cellular copper ion homeostasis	1.76E-03
65	GO:0006542: glutamine biosynthetic process	1.76E-03
66	GO:0006646: phosphatidylethanolamine biosynthetic process	1.76E-03
67	GO:0009687: abscisic acid metabolic process	1.76E-03
68	GO:0048578: positive regulation of long-day photoperiodism, flowering	2.25E-03
69	GO:0043097: pyrimidine nucleoside salvage	2.25E-03
70	GO:0046323: glucose import	2.26E-03
71	GO:0048367: shoot system development	2.29E-03
72	GO:0042752: regulation of circadian rhythm	2.43E-03
73	GO:0046686: response to cadmium ion	2.58E-03
74	GO:0008654: phospholipid biosynthetic process	2.61E-03
75	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	2.77E-03
76	GO:0048232: male gamete generation	2.77E-03
77	GO:0043248: proteasome assembly	2.77E-03
78	GO:0042732: D-xylose metabolic process	2.77E-03
79	GO:0006206: pyrimidine nucleobase metabolic process	2.77E-03
80	GO:0000741: karyogamy	2.77E-03
81	GO:0050665: hydrogen peroxide biosynthetic process	2.77E-03
82	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	2.77E-03
83	GO:0015691: cadmium ion transport	2.77E-03
84	GO:0048827: phyllome development	2.77E-03
85	GO:0006635: fatty acid beta-oxidation	2.79E-03
86	GO:0006694: steroid biosynthetic process	3.33E-03
87	GO:0031930: mitochondria-nucleus signaling pathway	3.33E-03
88	GO:0042742: defense response to bacterium	3.34E-03
89	GO:0006979: response to oxidative stress	3.40E-03
90	GO:0098869: cellular oxidant detoxification	3.93E-03
91	GO:0048437: floral organ development	3.93E-03
92	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.93E-03
93	GO:0009396: folic acid-containing compound biosynthetic process	3.93E-03
94	GO:0010044: response to aluminum ion	3.93E-03
95	GO:0016559: peroxisome fission	4.56E-03
96	GO:0006644: phospholipid metabolic process	4.56E-03
97	GO:0009061: anaerobic respiration	4.56E-03
98	GO:0009819: drought recovery	4.56E-03
99	GO:0009690: cytokinin metabolic process	4.56E-03
100	GO:0006605: protein targeting	4.56E-03
101	GO:0010078: maintenance of root meristem identity	4.56E-03
102	GO:0032508: DNA duplex unwinding	4.56E-03
103	GO:0006102: isocitrate metabolic process	4.56E-03
104	GO:0048573: photoperiodism, flowering	4.74E-03
105	GO:0006950: response to stress	4.74E-03
106	GO:0006972: hyperosmotic response	5.22E-03
107	GO:0006367: transcription initiation from RNA polymerase II promoter	5.22E-03
108	GO:0001510: RNA methylation	5.22E-03
109	GO:0009817: defense response to fungus, incompatible interaction	5.25E-03
110	GO:0007623: circadian rhythm	5.59E-03
111	GO:0006499: N-terminal protein myristoylation	5.79E-03
112	GO:0006811: ion transport	5.79E-03
113	GO:0006098: pentose-phosphate shunt	5.92E-03
114	GO:0046916: cellular transition metal ion homeostasis	5.92E-03
115	GO:0009631: cold acclimation	6.07E-03
116	GO:0010043: response to zinc ion	6.07E-03
117	GO:0006468: protein phosphorylation	6.43E-03
118	GO:0035999: tetrahydrofolate interconversion	6.64E-03
119	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	6.64E-03
120	GO:0008202: steroid metabolic process	6.64E-03
121	GO:0006099: tricarboxylic acid cycle	6.96E-03
122	GO:0055062: phosphate ion homeostasis	7.40E-03
123	GO:0009970: cellular response to sulfate starvation	7.40E-03
124	GO:0006995: cellular response to nitrogen starvation	7.40E-03
125	GO:0048829: root cap development	7.40E-03
126	GO:0010015: root morphogenesis	8.19E-03
127	GO:0009682: induced systemic resistance	8.19E-03
128	GO:0010105: negative regulation of ethylene-activated signaling pathway	9.00E-03
129	GO:0016925: protein sumoylation	9.00E-03
130	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	9.85E-03
131	GO:0010588: cotyledon vascular tissue pattern formation	9.85E-03
132	GO:2000012: regulation of auxin polar transport	9.85E-03
133	GO:0010102: lateral root morphogenesis	9.85E-03
134	GO:0006807: nitrogen compound metabolic process	9.85E-03
135	GO:0009414: response to water deprivation	1.06E-02
136	GO:0006970: response to osmotic stress	1.07E-02
137	GO:0006541: glutamine metabolic process	1.07E-02
138	GO:0007034: vacuolar transport	1.07E-02
139	GO:0009933: meristem structural organization	1.07E-02
140	GO:0009969: xyloglucan biosynthetic process	1.16E-02
141	GO:0007031: peroxisome organization	1.16E-02
142	GO:0005985: sucrose metabolic process	1.16E-02
143	GO:0090351: seedling development	1.16E-02
144	GO:0010030: positive regulation of seed germination	1.16E-02
145	GO:0000162: tryptophan biosynthetic process	1.25E-02
146	GO:0006863: purine nucleobase transport	1.25E-02
147	GO:0035556: intracellular signal transduction	1.31E-02
148	GO:0006406: mRNA export from nucleus	1.35E-02
149	GO:0045333: cellular respiration	1.35E-02
150	GO:0007165: signal transduction	1.40E-02
151	GO:0009695: jasmonic acid biosynthetic process	1.45E-02
152	GO:0006825: copper ion transport	1.45E-02
153	GO:0009269: response to desiccation	1.55E-02
154	GO:0030433: ubiquitin-dependent ERAD pathway	1.65E-02
155	GO:0035428: hexose transmembrane transport	1.65E-02
156	GO:0031348: negative regulation of defense response	1.65E-02
157	GO:0006396: RNA processing	1.70E-02
158	GO:0071215: cellular response to abscisic acid stimulus	1.76E-02
159	GO:0001944: vasculature development	1.76E-02
160	GO:0009625: response to insect	1.76E-02
161	GO:0042631: cellular response to water deprivation	2.09E-02
162	GO:0080022: primary root development	2.09E-02
163	GO:0010501: RNA secondary structure unwinding	2.09E-02
164	GO:0010051: xylem and phloem pattern formation	2.09E-02
165	GO:0006520: cellular amino acid metabolic process	2.20E-02
166	GO:0045489: pectin biosynthetic process	2.20E-02
167	GO:0010154: fruit development	2.20E-02
168	GO:0010305: leaf vascular tissue pattern formation	2.20E-02
169	GO:0010197: polar nucleus fusion	2.20E-02
170	GO:0010182: sugar mediated signaling pathway	2.20E-02
171	GO:0048364: root development	2.21E-02
172	GO:0009646: response to absence of light	2.32E-02
173	GO:0010183: pollen tube guidance	2.43E-02
174	GO:0009556: microsporogenesis	2.43E-02
175	GO:0071281: cellular response to iron ion	2.80E-02
176	GO:0019760: glucosinolate metabolic process	2.93E-02
177	GO:0010252: auxin homeostasis	2.93E-02
178	GO:0006914: autophagy	2.93E-02
179	GO:0010286: heat acclimation	3.06E-02
180	GO:0055114: oxidation-reduction process	3.31E-02
181	GO:0016126: sterol biosynthetic process	3.32E-02
182	GO:0001666: response to hypoxia	3.32E-02
183	GO:0009617: response to bacterium	3.42E-02
184	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.46E-02
185	GO:0009627: systemic acquired resistance	3.59E-02
186	GO:0042128: nitrate assimilation	3.59E-02
187	GO:0009735: response to cytokinin	3.83E-02
188	GO:0016049: cell growth	3.87E-02
189	GO:0010311: lateral root formation	4.16E-02
190	GO:0010218: response to far red light	4.30E-02
191	GO:0016051: carbohydrate biosynthetic process	4.75E-02
192	GO:0009637: response to blue light	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:1990446: U1 snRNP binding	0.00E+00
2	GO:0047205: quinate O-hydroxycinnamoyltransferase activity	0.00E+00
3	GO:0047172: shikimate O-hydroxycinnamoyltransferase activity	0.00E+00
4	GO:0047787: delta4-3-oxosteroid 5beta-reductase activity	0.00E+00
5	GO:0009045: xylose isomerase activity	0.00E+00
6	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
7	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
8	GO:0004370: glycerol kinase activity	0.00E+00
9	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
10	GO:0016428: tRNA (cytosine-5-)-methyltransferase activity	0.00E+00
11	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
12	GO:0050897: cobalt ion binding	8.30E-05
13	GO:0005524: ATP binding	8.72E-05
14	GO:0004525: ribonuclease III activity	2.41E-04
15	GO:0009679: hexose:proton symporter activity	2.57E-04
16	GO:0035671: enone reductase activity	2.57E-04
17	GO:0010013: N-1-naphthylphthalamic acid binding	2.57E-04
18	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	2.57E-04
19	GO:0046870: cadmium ion binding	2.57E-04
20	GO:0050200: plasmalogen synthase activity	2.57E-04
21	GO:0004112: cyclic-nucleotide phosphodiesterase activity	2.57E-04
22	GO:0070006: metalloaminopeptidase activity	2.57E-04
23	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.57E-04
24	GO:0003867: 4-aminobutyrate transaminase activity	2.57E-04
25	GO:0003994: aconitate hydratase activity	5.68E-04
26	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	5.68E-04
27	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	5.68E-04
28	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	5.68E-04
29	GO:0004839: ubiquitin activating enzyme activity	5.68E-04
30	GO:0038199: ethylene receptor activity	5.68E-04
31	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	5.68E-04
32	GO:0004329: formate-tetrahydrofolate ligase activity	5.68E-04
33	GO:0019200: carbohydrate kinase activity	5.68E-04
34	GO:0004352: glutamate dehydrogenase (NAD+) activity	5.68E-04
35	GO:0004353: glutamate dehydrogenase [NAD(P)+] activity	5.68E-04
36	GO:0032791: lead ion binding	5.68E-04
37	GO:0004609: phosphatidylserine decarboxylase activity	5.68E-04
38	GO:0019948: SUMO activating enzyme activity	9.22E-04
39	GO:0005047: signal recognition particle binding	9.22E-04
40	GO:0019829: cation-transporting ATPase activity	9.22E-04
41	GO:0017150: tRNA dihydrouridine synthase activity	9.22E-04
42	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	9.22E-04
43	GO:0004383: guanylate cyclase activity	9.22E-04
44	GO:0004096: catalase activity	9.22E-04
45	GO:0005351: sugar:proton symporter activity	1.01E-03
46	GO:0001653: peptide receptor activity	1.32E-03
47	GO:0048027: mRNA 5'-UTR binding	1.32E-03
48	GO:0015086: cadmium ion transmembrane transporter activity	1.32E-03
49	GO:0004108: citrate (Si)-synthase activity	1.32E-03
50	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.32E-03
51	GO:0051740: ethylene binding	1.32E-03
52	GO:0004300: enoyl-CoA hydratase activity	1.32E-03
53	GO:0005507: copper ion binding	1.66E-03
54	GO:0004834: tryptophan synthase activity	1.76E-03
55	GO:0004737: pyruvate decarboxylase activity	1.76E-03
56	GO:0005253: anion channel activity	1.76E-03
57	GO:0004576: oligosaccharyl transferase activity	1.76E-03
58	GO:0042277: peptide binding	1.76E-03
59	GO:0009916: alternative oxidase activity	1.76E-03
60	GO:0010294: abscisic acid glucosyltransferase activity	2.25E-03
61	GO:0015145: monosaccharide transmembrane transporter activity	2.25E-03
62	GO:0008641: small protein activating enzyme activity	2.25E-03
63	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.25E-03
64	GO:0017137: Rab GTPase binding	2.25E-03
65	GO:0004356: glutamate-ammonia ligase activity	2.25E-03
66	GO:0016301: kinase activity	2.44E-03
67	GO:0030976: thiamine pyrophosphate binding	2.77E-03
68	GO:0004629: phospholipase C activity	2.77E-03
69	GO:0019137: thioglucosidase activity	2.77E-03
70	GO:0000293: ferric-chelate reductase activity	2.77E-03
71	GO:0031369: translation initiation factor binding	2.77E-03
72	GO:0035252: UDP-xylosyltransferase activity	2.77E-03
73	GO:0036402: proteasome-activating ATPase activity	2.77E-03
74	GO:0004849: uridine kinase activity	3.33E-03
75	GO:0070300: phosphatidic acid binding	3.33E-03
76	GO:0003730: mRNA 3'-UTR binding	3.33E-03
77	GO:0003950: NAD+ ADP-ribosyltransferase activity	3.33E-03
78	GO:0004602: glutathione peroxidase activity	3.33E-03
79	GO:0004435: phosphatidylinositol phospholipase C activity	3.33E-03
80	GO:0016831: carboxy-lyase activity	3.93E-03
81	GO:0015140: malate transmembrane transporter activity	3.93E-03
82	GO:0004869: cysteine-type endopeptidase inhibitor activity	4.56E-03
83	GO:0015144: carbohydrate transmembrane transporter activity	4.66E-03
84	GO:0005375: copper ion transmembrane transporter activity	5.22E-03
85	GO:0005096: GTPase activator activity	5.52E-03
86	GO:0047617: acyl-CoA hydrolase activity	6.64E-03
87	GO:0003697: single-stranded DNA binding	6.65E-03
88	GO:0008422: beta-glucosidase activity	7.27E-03
89	GO:0003729: mRNA binding	7.29E-03
90	GO:0015020: glucuronosyltransferase activity	7.40E-03
91	GO:0004673: protein histidine kinase activity	7.40E-03
92	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	7.58E-03
93	GO:0004177: aminopeptidase activity	8.19E-03
94	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	9.85E-03
95	GO:0000155: phosphorelay sensor kinase activity	9.85E-03
96	GO:0031624: ubiquitin conjugating enzyme binding	1.07E-02
97	GO:0017025: TBP-class protein binding	1.16E-02
98	GO:0004674: protein serine/threonine kinase activity	1.23E-02
99	GO:0043424: protein histidine kinase binding	1.45E-02
100	GO:0005345: purine nucleobase transmembrane transporter activity	1.45E-02
101	GO:0004707: MAP kinase activity	1.55E-02
102	GO:0004722: protein serine/threonine phosphatase activity	1.81E-02
103	GO:0003727: single-stranded RNA binding	1.86E-02
104	GO:0004672: protein kinase activity	2.13E-02
105	GO:0005355: glucose transmembrane transporter activity	2.32E-02
106	GO:0000156: phosphorelay response regulator activity	2.80E-02
107	GO:0005515: protein binding	2.90E-02
108	GO:0016791: phosphatase activity	2.93E-02
109	GO:0005509: calcium ion binding	3.07E-02
110	GO:0008375: acetylglucosaminyltransferase activity	3.59E-02
111	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.59E-02
112	GO:0016887: ATPase activity	3.62E-02
113	GO:0042802: identical protein binding	3.64E-02
114	GO:0008270: zinc ion binding	3.64E-02
115	GO:0102483: scopolin beta-glucosidase activity	3.73E-02
116	GO:0004721: phosphoprotein phosphatase activity	3.73E-02
117	GO:0030247: polysaccharide binding	3.73E-02
118	GO:0004683: calmodulin-dependent protein kinase activity	3.73E-02
119	GO:0005215: transporter activity	3.99E-02
120	GO:0046982: protein heterodimerization activity	4.34E-02
121	GO:0030145: manganese ion binding	4.45E-02
122	GO:0003676: nucleic acid binding	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0031981: nuclear lumen	0.00E+00
3	GO:0071008: U2-type post-mRNA release spliceosomal complex	0.00E+00
4	GO:0005886: plasma membrane	2.07E-08
5	GO:0005777: peroxisome	8.50E-07
6	GO:0016021: integral component of membrane	7.08E-05
7	GO:0005783: endoplasmic reticulum	9.57E-05
8	GO:0009506: plasmodesma	1.08E-03
9	GO:0016020: membrane	1.31E-03
10	GO:0005776: autophagosome	1.76E-03
11	GO:0016363: nuclear matrix	3.33E-03
12	GO:0031597: cytosolic proteasome complex	3.33E-03
13	GO:0000815: ESCRT III complex	3.33E-03
14	GO:0030687: preribosome, large subunit precursor	3.93E-03
15	GO:0031595: nuclear proteasome complex	3.93E-03
16	GO:0005779: integral component of peroxisomal membrane	5.22E-03
17	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.22E-03
18	GO:0031090: organelle membrane	5.92E-03
19	GO:0000786: nucleosome	6.36E-03
20	GO:0005794: Golgi apparatus	6.56E-03
21	GO:0008540: proteasome regulatory particle, base subcomplex	6.64E-03
22	GO:0005829: cytosol	7.31E-03
23	GO:0005618: cell wall	7.46E-03
24	GO:0005789: endoplasmic reticulum membrane	7.67E-03
25	GO:0005665: DNA-directed RNA polymerase II, core complex	9.00E-03
26	GO:0010008: endosome membrane	1.42E-02
27	GO:0070469: respiratory chain	1.45E-02
28	GO:0048046: apoplast	1.60E-02
29	GO:0031410: cytoplasmic vesicle	1.65E-02
30	GO:0031965: nuclear membrane	2.43E-02
31	GO:0009705: plant-type vacuole membrane	2.87E-02
32	GO:0005768: endosome	2.96E-02
33	GO:0005778: peroxisomal membrane	3.06E-02
34	GO:0000932: P-body	3.32E-02
35	GO:0005773: vacuole	3.46E-02
36	GO:0005774: vacuolar membrane	3.63E-02
37	GO:0000151: ubiquitin ligase complex	4.01E-02
38	GO:0009505: plant-type cell wall	4.77E-02