co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G29820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006105: succinate metabolic process	0.00E+00
2	GO:0006987: activation of signaling protein activity involved in unfolded protein response	0.00E+00
3	GO:0046459: short-chain fatty acid metabolic process	0.00E+00
4	GO:0019484: beta-alanine catabolic process	0.00E+00
5	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
6	GO:0010398: xylogalacturonan metabolic process	0.00E+00
7	GO:0006227: dUDP biosynthetic process	0.00E+00
8	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
9	GO:0006592: ornithine biosynthetic process	0.00E+00
10	GO:0006233: dTDP biosynthetic process	0.00E+00
11	GO:0006235: dTTP biosynthetic process	0.00E+00
12	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
13	GO:0006950: response to stress	2.51E-06
14	GO:0019441: tryptophan catabolic process to kynurenine	3.07E-06
15	GO:0009399: nitrogen fixation	2.51E-05
16	GO:0010941: regulation of cell death	2.57E-04
17	GO:0010184: cytokinin transport	2.57E-04
18	GO:1903409: reactive oxygen species biosynthetic process	2.57E-04
19	GO:0035344: hypoxanthine transport	2.57E-04
20	GO:0071366: cellular response to indolebutyric acid stimulus	2.57E-04
21	GO:0009865: pollen tube adhesion	2.57E-04
22	GO:0006540: glutamate decarboxylation to succinate	2.57E-04
23	GO:0098721: uracil import across plasma membrane	2.57E-04
24	GO:0098702: adenine import across plasma membrane	2.57E-04
25	GO:0098710: guanine import across plasma membrane	2.57E-04
26	GO:0009450: gamma-aminobutyric acid catabolic process	2.57E-04
27	GO:1990641: response to iron ion starvation	2.57E-04
28	GO:0009808: lignin metabolic process	2.98E-04
29	GO:0008202: steroid metabolic process	4.27E-04
30	GO:0001666: response to hypoxia	4.74E-04
31	GO:1900459: positive regulation of brassinosteroid mediated signaling pathway	5.68E-04
32	GO:0006101: citrate metabolic process	5.68E-04
33	GO:0052542: defense response by callose deposition	5.68E-04
34	GO:0051258: protein polymerization	5.68E-04
35	GO:2000693: positive regulation of seed maturation	5.68E-04
36	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	5.68E-04
37	GO:0010033: response to organic substance	5.68E-04
38	GO:0048586: regulation of long-day photoperiodism, flowering	9.22E-04
39	GO:0042344: indole glucosinolate catabolic process	9.22E-04
40	GO:0006954: inflammatory response	9.22E-04
41	GO:0046786: viral replication complex formation and maintenance	9.22E-04
42	GO:0010150: leaf senescence	1.04E-03
43	GO:0015749: monosaccharide transport	1.32E-03
44	GO:0009113: purine nucleobase biosynthetic process	1.32E-03
45	GO:0051259: protein oligomerization	1.32E-03
46	GO:0019438: aromatic compound biosynthetic process	1.32E-03
47	GO:0006624: vacuolar protein processing	1.32E-03
48	GO:0048194: Golgi vesicle budding	1.32E-03
49	GO:0006020: inositol metabolic process	1.32E-03
50	GO:0071215: cellular response to abscisic acid stimulus	1.65E-03
51	GO:1902584: positive regulation of response to water deprivation	1.76E-03
52	GO:0006536: glutamate metabolic process	1.76E-03
53	GO:0010508: positive regulation of autophagy	1.76E-03
54	GO:0042594: response to starvation	1.76E-03
55	GO:0006542: glutamine biosynthetic process	1.76E-03
56	GO:0030308: negative regulation of cell growth	2.25E-03
57	GO:0000290: deadenylation-dependent decapping of nuclear-transcribed mRNA	2.25E-03
58	GO:0007029: endoplasmic reticulum organization	2.25E-03
59	GO:0046323: glucose import	2.26E-03
60	GO:0009626: plant-type hypersensitive response	2.39E-03
61	GO:0042732: D-xylose metabolic process	2.77E-03
62	GO:0009267: cellular response to starvation	2.77E-03
63	GO:1900425: negative regulation of defense response to bacterium	2.77E-03
64	GO:0010337: regulation of salicylic acid metabolic process	2.77E-03
65	GO:0015691: cadmium ion transport	2.77E-03
66	GO:0016070: RNA metabolic process	2.77E-03
67	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	2.77E-03
68	GO:0006635: fatty acid beta-oxidation	2.79E-03
69	GO:0006694: steroid biosynthetic process	3.33E-03
70	GO:0006914: autophagy	3.38E-03
71	GO:0006979: response to oxidative stress	3.40E-03
72	GO:0010286: heat acclimation	3.59E-03
73	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	3.93E-03
74	GO:0071669: plant-type cell wall organization or biogenesis	3.93E-03
75	GO:0070370: cellular heat acclimation	3.93E-03
76	GO:0009396: folic acid-containing compound biosynthetic process	3.93E-03
77	GO:0010044: response to aluminum ion	3.93E-03
78	GO:0006955: immune response	3.93E-03
79	GO:0009395: phospholipid catabolic process	3.93E-03
80	GO:1900150: regulation of defense response to fungus	4.56E-03
81	GO:0006605: protein targeting	4.56E-03
82	GO:0006102: isocitrate metabolic process	4.56E-03
83	GO:0016559: peroxisome fission	4.56E-03
84	GO:0009651: response to salt stress	5.05E-03
85	GO:0006526: arginine biosynthetic process	5.22E-03
86	GO:0030968: endoplasmic reticulum unfolded protein response	5.22E-03
87	GO:0008219: cell death	5.25E-03
88	GO:0006098: pentose-phosphate shunt	5.92E-03
89	GO:0009821: alkaloid biosynthetic process	5.92E-03
90	GO:0046916: cellular transition metal ion homeostasis	5.92E-03
91	GO:0007338: single fertilization	5.92E-03
92	GO:0007568: aging	6.07E-03
93	GO:0035999: tetrahydrofolate interconversion	6.64E-03
94	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	6.64E-03
95	GO:0016571: histone methylation	6.64E-03
96	GO:0006099: tricarboxylic acid cycle	6.96E-03
97	GO:0007064: mitotic sister chromatid cohesion	7.40E-03
98	GO:0006535: cysteine biosynthetic process from serine	7.40E-03
99	GO:0043069: negative regulation of programmed cell death	7.40E-03
100	GO:0048829: root cap development	7.40E-03
101	GO:0046686: response to cadmium ion	7.97E-03
102	GO:0052544: defense response by callose deposition in cell wall	8.19E-03
103	GO:0071365: cellular response to auxin stimulus	9.00E-03
104	GO:0000266: mitochondrial fission	9.00E-03
105	GO:0006807: nitrogen compound metabolic process	9.85E-03
106	GO:0034605: cellular response to heat	1.07E-02
107	GO:0006541: glutamine metabolic process	1.07E-02
108	GO:0042742: defense response to bacterium	1.10E-02
109	GO:0010167: response to nitrate	1.16E-02
110	GO:0005985: sucrose metabolic process	1.16E-02
111	GO:0007031: peroxisome organization	1.16E-02
112	GO:0000162: tryptophan biosynthetic process	1.25E-02
113	GO:0034976: response to endoplasmic reticulum stress	1.25E-02
114	GO:0006863: purine nucleobase transport	1.25E-02
115	GO:0009733: response to auxin	1.35E-02
116	GO:0019344: cysteine biosynthetic process	1.35E-02
117	GO:0016192: vesicle-mediated transport	1.37E-02
118	GO:0048367: shoot system development	1.42E-02
119	GO:0044550: secondary metabolite biosynthetic process	1.43E-02
120	GO:0006468: protein phosphorylation	1.50E-02
121	GO:0031408: oxylipin biosynthetic process	1.55E-02
122	GO:0045454: cell redox homeostasis	1.61E-02
123	GO:0035428: hexose transmembrane transport	1.65E-02
124	GO:0031348: negative regulation of defense response	1.65E-02
125	GO:0071456: cellular response to hypoxia	1.65E-02
126	GO:0055114: oxidation-reduction process	1.75E-02
127	GO:0009742: brassinosteroid mediated signaling pathway	1.76E-02
128	GO:0006457: protein folding	1.79E-02
129	GO:0006869: lipid transport	1.81E-02
130	GO:0048443: stamen development	1.86E-02
131	GO:0000271: polysaccharide biosynthetic process	2.09E-02
132	GO:0015991: ATP hydrolysis coupled proton transport	2.09E-02
133	GO:0042631: cellular response to water deprivation	2.09E-02
134	GO:0009960: endosperm development	2.20E-02
135	GO:0045489: pectin biosynthetic process	2.20E-02
136	GO:0006520: cellular amino acid metabolic process	2.20E-02
137	GO:0010154: fruit development	2.20E-02
138	GO:0010182: sugar mediated signaling pathway	2.20E-02
139	GO:0048364: root development	2.21E-02
140	GO:0048544: recognition of pollen	2.32E-02
141	GO:0009646: response to absence of light	2.32E-02
142	GO:0010183: pollen tube guidance	2.43E-02
143	GO:0009749: response to glucose	2.43E-02
144	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.56E-02
145	GO:0010583: response to cyclopentenone	2.68E-02
146	GO:0007264: small GTPase mediated signal transduction	2.68E-02
147	GO:0071281: cellular response to iron ion	2.80E-02
148	GO:0009873: ethylene-activated signaling pathway	2.89E-02
149	GO:0009567: double fertilization forming a zygote and endosperm	2.93E-02
150	GO:0071805: potassium ion transmembrane transport	3.06E-02
151	GO:0051607: defense response to virus	3.19E-02
152	GO:0009734: auxin-activated signaling pathway	3.22E-02
153	GO:0007166: cell surface receptor signaling pathway	3.27E-02
154	GO:0016126: sterol biosynthetic process	3.32E-02
155	GO:0010468: regulation of gene expression	3.42E-02
156	GO:0009617: response to bacterium	3.42E-02
157	GO:0010029: regulation of seed germination	3.46E-02
158	GO:0009816: defense response to bacterium, incompatible interaction	3.46E-02
159	GO:0009627: systemic acquired resistance	3.59E-02
160	GO:0042128: nitrate assimilation	3.59E-02
161	GO:0048573: photoperiodism, flowering	3.73E-02
162	GO:0009817: defense response to fungus, incompatible interaction	4.01E-02
163	GO:0030244: cellulose biosynthetic process	4.01E-02
164	GO:0010311: lateral root formation	4.16E-02
165	GO:0009832: plant-type cell wall biogenesis	4.16E-02
166	GO:0048767: root hair elongation	4.16E-02
167	GO:0009826: unidimensional cell growth	4.26E-02
168	GO:0006499: N-terminal protein myristoylation	4.30E-02
169	GO:0009631: cold acclimation	4.45E-02
170	GO:0010043: response to zinc ion	4.45E-02
171	GO:0006865: amino acid transport	4.60E-02
172	GO:0016051: carbohydrate biosynthetic process	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0009045: xylose isomerase activity	0.00E+00
2	GO:0004491: methylmalonate-semialdehyde dehydrogenase (acylating) activity	0.00E+00
3	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
4	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
5	GO:0004798: thymidylate kinase activity	0.00E+00
6	GO:0008777: acetylornithine deacetylase activity	0.00E+00
7	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
8	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
9	GO:0004061: arylformamidase activity	3.07E-06
10	GO:0004356: glutamate-ammonia ligase activity	7.21E-05
11	GO:0050897: cobalt ion binding	8.30E-05
12	GO:0001530: lipopolysaccharide binding	2.57E-04
13	GO:0046870: cadmium ion binding	2.57E-04
14	GO:0015208: guanine transmembrane transporter activity	2.57E-04
15	GO:0004112: cyclic-nucleotide phosphodiesterase activity	2.57E-04
16	GO:0015294: solute:cation symporter activity	2.57E-04
17	GO:0003867: 4-aminobutyrate transaminase activity	2.57E-04
18	GO:0030544: Hsp70 protein binding	2.57E-04
19	GO:0015207: adenine transmembrane transporter activity	2.57E-04
20	GO:0009679: hexose:proton symporter activity	2.57E-04
21	GO:0008142: oxysterol binding	2.98E-04
22	GO:0071949: FAD binding	3.60E-04
23	GO:0032934: sterol binding	5.68E-04
24	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	5.68E-04
25	GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	5.68E-04
26	GO:0004352: glutamate dehydrogenase (NAD+) activity	5.68E-04
27	GO:0004329: formate-tetrahydrofolate ligase activity	5.68E-04
28	GO:0047209: coniferyl-alcohol glucosyltransferase activity	5.68E-04
29	GO:0004353: glutamate dehydrogenase [NAD(P)+] activity	5.68E-04
30	GO:0004566: beta-glucuronidase activity	5.68E-04
31	GO:0032791: lead ion binding	5.68E-04
32	GO:0003994: aconitate hydratase activity	5.68E-04
33	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	5.68E-04
34	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	5.68E-04
35	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	9.22E-04
36	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	9.22E-04
37	GO:0016595: glutamate binding	9.22E-04
38	GO:0005047: signal recognition particle binding	9.22E-04
39	GO:0048027: mRNA 5'-UTR binding	1.32E-03
40	GO:0009041: uridylate kinase activity	1.32E-03
41	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	1.32E-03
42	GO:0015086: cadmium ion transmembrane transporter activity	1.32E-03
43	GO:0004108: citrate (Si)-synthase activity	1.32E-03
44	GO:0000339: RNA cap binding	1.32E-03
45	GO:0005507: copper ion binding	1.66E-03
46	GO:0043015: gamma-tubulin binding	1.76E-03
47	GO:0015210: uracil transmembrane transporter activity	1.76E-03
48	GO:0003995: acyl-CoA dehydrogenase activity	1.76E-03
49	GO:0016004: phospholipase activator activity	1.76E-03
50	GO:0004834: tryptophan synthase activity	1.76E-03
51	GO:0004737: pyruvate decarboxylase activity	1.76E-03
52	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.76E-03
53	GO:0015145: monosaccharide transmembrane transporter activity	2.25E-03
54	GO:0003997: acyl-CoA oxidase activity	2.25E-03
55	GO:0005496: steroid binding	2.25E-03
56	GO:0016208: AMP binding	2.77E-03
57	GO:0035252: UDP-xylosyltransferase activity	2.77E-03
58	GO:0030976: thiamine pyrophosphate binding	2.77E-03
59	GO:0051753: mannan synthase activity	3.33E-03
60	GO:0004012: phospholipid-translocating ATPase activity	3.33E-03
61	GO:0004124: cysteine synthase activity	3.33E-03
62	GO:0004620: phospholipase activity	3.93E-03
63	GO:0016831: carboxy-lyase activity	3.93E-03
64	GO:0051213: dioxygenase activity	4.03E-03
65	GO:0004869: cysteine-type endopeptidase inhibitor activity	4.56E-03
66	GO:0015144: carbohydrate transmembrane transporter activity	4.66E-03
67	GO:0005351: sugar:proton symporter activity	5.42E-03
68	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	5.92E-03
69	GO:0009672: auxin:proton symporter activity	6.64E-03
70	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	6.64E-03
71	GO:0004713: protein tyrosine kinase activity	7.40E-03
72	GO:0008171: O-methyltransferase activity	7.40E-03
73	GO:0047372: acylglycerol lipase activity	8.19E-03
74	GO:0000976: transcription regulatory region sequence-specific DNA binding	9.00E-03
75	GO:0004521: endoribonuclease activity	9.00E-03
76	GO:0005524: ATP binding	9.11E-03
77	GO:0004565: beta-galactosidase activity	9.85E-03
78	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	9.85E-03
79	GO:0004022: alcohol dehydrogenase (NAD) activity	9.85E-03
80	GO:0004175: endopeptidase activity	1.07E-02
81	GO:0016301: kinase activity	1.14E-02
82	GO:0008234: cysteine-type peptidase activity	1.29E-02
83	GO:0043130: ubiquitin binding	1.35E-02
84	GO:0045735: nutrient reservoir activity	1.37E-02
85	GO:0043424: protein histidine kinase binding	1.45E-02
86	GO:0005345: purine nucleobase transmembrane transporter activity	1.45E-02
87	GO:0015079: potassium ion transmembrane transporter activity	1.45E-02
88	GO:0016760: cellulose synthase (UDP-forming) activity	1.76E-02
89	GO:0016491: oxidoreductase activity	1.77E-02
90	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.78E-02
91	GO:0003756: protein disulfide isomerase activity	1.86E-02
92	GO:0005516: calmodulin binding	2.23E-02
93	GO:0030170: pyridoxal phosphate binding	2.30E-02
94	GO:0005355: glucose transmembrane transporter activity	2.32E-02
95	GO:0010181: FMN binding	2.32E-02
96	GO:0004197: cysteine-type endopeptidase activity	2.68E-02
97	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.80E-02
98	GO:0016759: cellulose synthase activity	2.93E-02
99	GO:0004674: protein serine/threonine kinase activity	2.98E-02
100	GO:0008017: microtubule binding	3.00E-02
101	GO:0008237: metallopeptidase activity	3.06E-02
102	GO:0043565: sequence-specific DNA binding	3.21E-02
103	GO:0008375: acetylglucosaminyltransferase activity	3.59E-02
104	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.64E-02
105	GO:0042802: identical protein binding	3.64E-02
106	GO:0004806: triglyceride lipase activity	3.73E-02
107	GO:0030247: polysaccharide binding	3.73E-02
108	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.87E-02
109	GO:0016787: hydrolase activity	3.99E-02
110	GO:0005096: GTPase activator activity	4.16E-02
111	GO:0000287: magnesium ion binding	4.34E-02
112	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.75E-02
113	GO:0003993: acid phosphatase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0005785: signal recognition particle receptor complex	0.00E+00
2	GO:0005886: plasma membrane	5.31E-07
3	GO:0005773: vacuole	6.07E-06
4	GO:0016021: integral component of membrane	7.00E-06
5	GO:0000323: lytic vacuole	2.51E-05
6	GO:0005774: vacuolar membrane	7.11E-04
7	GO:0042406: extrinsic component of endoplasmic reticulum membrane	9.22E-04
8	GO:0009506: plasmodesma	1.08E-03
9	GO:0005794: Golgi apparatus	1.38E-03
10	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.76E-03
11	GO:0005783: endoplasmic reticulum	1.97E-03
12	GO:0030173: integral component of Golgi membrane	3.33E-03
13	GO:0005779: integral component of peroxisomal membrane	5.22E-03
14	GO:0034045: pre-autophagosomal structure membrane	5.22E-03
15	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	5.22E-03
16	GO:0009514: glyoxysome	5.22E-03
17	GO:0005737: cytoplasm	5.50E-03
18	GO:0005765: lysosomal membrane	8.19E-03
19	GO:0016020: membrane	9.29E-03
20	GO:0005777: peroxisome	1.49E-02
21	GO:0031965: nuclear membrane	2.43E-02
22	GO:0005778: peroxisomal membrane	3.06E-02
23	GO:0005615: extracellular space	3.20E-02
24	GO:0000932: P-body	3.32E-02