Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G29790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010606: positive regulation of cytoplasmic mRNA processing body assembly0.00E+00
2GO:0006848: pyruvate transport0.00E+00
3GO:2000630: positive regulation of miRNA metabolic process0.00E+00
4GO:0032889: regulation of vacuole fusion, non-autophagic0.00E+00
5GO:1900490: positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity0.00E+00
6GO:0060560: developmental growth involved in morphogenesis0.00E+00
7GO:2000636: positive regulation of primary miRNA processing0.00E+00
8GO:0048867: stem cell fate determination0.00E+00
9GO:1902185: positive regulation of shoot apical meristem development0.00E+00
10GO:0080119: ER body organization1.44E-06
11GO:0051014: actin filament severing5.03E-05
12GO:0099636: cytoplasmic streaming5.03E-05
13GO:0046898: response to cycloheximide1.23E-04
14GO:0035542: regulation of SNARE complex assembly1.23E-04
15GO:0071217: cellular response to external biotic stimulus1.23E-04
16GO:0016197: endosomal transport1.23E-04
17GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process2.11E-04
18GO:0010272: response to silver ion2.11E-04
19GO:0009663: plasmodesma organization2.11E-04
20GO:0006473: protein acetylation2.11E-04
21GO:0032012: regulation of ARF protein signal transduction2.11E-04
22GO:1901000: regulation of response to salt stress3.09E-04
23GO:0051764: actin crosslink formation4.15E-04
24GO:1990937: xylan acetylation4.15E-04
25GO:0031087: deadenylation-independent decapping of nuclear-transcribed mRNA4.15E-04
26GO:0016579: protein deubiquitination4.40E-04
27GO:0007029: endoplasmic reticulum organization5.26E-04
28GO:0032876: negative regulation of DNA endoreduplication5.26E-04
29GO:0034052: positive regulation of plant-type hypersensitive response5.26E-04
30GO:0006751: glutathione catabolic process6.44E-04
31GO:0048232: male gamete generation6.44E-04
32GO:0045491: xylan metabolic process6.44E-04
33GO:0033962: cytoplasmic mRNA processing body assembly7.68E-04
34GO:0017148: negative regulation of translation7.68E-04
35GO:0051693: actin filament capping8.97E-04
36GO:0006886: intracellular protein transport9.90E-04
37GO:0040029: regulation of gene expression, epigenetic1.03E-03
38GO:0006875: cellular metal ion homeostasis1.03E-03
39GO:0010078: maintenance of root meristem identity1.03E-03
40GO:0071482: cellular response to light stimulus1.17E-03
41GO:0010345: suberin biosynthetic process1.32E-03
42GO:0016573: histone acetylation1.47E-03
43GO:0030042: actin filament depolymerization1.47E-03
44GO:0010018: far-red light signaling pathway1.47E-03
45GO:0006298: mismatch repair1.63E-03
46GO:0010215: cellulose microfibril organization1.63E-03
47GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.96E-03
48GO:0008361: regulation of cell size1.96E-03
49GO:0010152: pollen maturation1.96E-03
50GO:0000398: mRNA splicing, via spliceosome2.07E-03
51GO:0048467: gynoecium development2.32E-03
52GO:0010143: cutin biosynthetic process2.32E-03
53GO:0007015: actin filament organization2.32E-03
54GO:0007033: vacuole organization2.50E-03
55GO:0007030: Golgi organization2.50E-03
56GO:0080188: RNA-directed DNA methylation2.50E-03
57GO:0010025: wax biosynthetic process2.69E-03
58GO:0042753: positive regulation of circadian rhythm2.69E-03
59GO:0042023: DNA endoreduplication2.69E-03
60GO:0007010: cytoskeleton organization2.88E-03
61GO:0010187: negative regulation of seed germination2.88E-03
62GO:0051017: actin filament bundle assembly2.88E-03
63GO:0006289: nucleotide-excision repair2.88E-03
64GO:0010073: meristem maintenance3.08E-03
65GO:0008299: isoprenoid biosynthetic process3.08E-03
66GO:0006874: cellular calcium ion homeostasis3.08E-03
67GO:0010017: red or far-red light signaling pathway3.50E-03
68GO:0030433: ubiquitin-dependent ERAD pathway3.50E-03
69GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.71E-03
70GO:0009294: DNA mediated transformation3.71E-03
71GO:0045492: xylan biosynthetic process3.93E-03
72GO:0010091: trichome branching3.93E-03
73GO:0042335: cuticle development4.37E-03
74GO:0006814: sodium ion transport4.83E-03
75GO:0009749: response to glucose5.07E-03
76GO:0001666: response to hypoxia6.85E-03
77GO:0009816: defense response to bacterium, incompatible interaction7.12E-03
78GO:0006974: cellular response to DNA damage stimulus7.40E-03
79GO:0006888: ER to Golgi vesicle-mediated transport7.68E-03
80GO:0048573: photoperiodism, flowering7.68E-03
81GO:0016049: cell growth7.96E-03
82GO:0008219: cell death8.24E-03
83GO:0048481: plant ovule development8.24E-03
84GO:0030244: cellulose biosynthetic process8.24E-03
85GO:0048767: root hair elongation8.53E-03
86GO:0010218: response to far red light8.82E-03
87GO:0009834: plant-type secondary cell wall biogenesis8.82E-03
88GO:0006397: mRNA processing9.01E-03
89GO:0006897: endocytosis1.10E-02
90GO:0008283: cell proliferation1.16E-02
91GO:0000209: protein polyubiquitination1.20E-02
92GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.33E-02
93GO:0009846: pollen germination1.37E-02
94GO:0009908: flower development1.39E-02
95GO:0009585: red, far-red light phototransduction1.44E-02
96GO:0009909: regulation of flower development1.54E-02
97GO:0006417: regulation of translation1.54E-02
98GO:0009737: response to abscisic acid1.61E-02
99GO:0048367: shoot system development1.65E-02
100GO:0009626: plant-type hypersensitive response1.69E-02
101GO:0009620: response to fungus1.73E-02
102GO:0016569: covalent chromatin modification1.77E-02
103GO:0009624: response to nematode1.84E-02
104GO:0009742: brassinosteroid mediated signaling pathway1.92E-02
105GO:0006511: ubiquitin-dependent protein catabolic process2.09E-02
106GO:0009845: seed germination2.29E-02
107GO:0009790: embryo development2.41E-02
108GO:0016036: cellular response to phosphate starvation2.59E-02
109GO:0040008: regulation of growth2.63E-02
110GO:0007623: circadian rhythm2.72E-02
111GO:0009651: response to salt stress2.86E-02
112GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process2.95E-02
113GO:0006470: protein dephosphorylation2.99E-02
114GO:0008380: RNA splicing3.08E-02
115GO:0009617: response to bacterium3.08E-02
116GO:0030154: cell differentiation3.39E-02
117GO:0009826: unidimensional cell growth3.61E-02
118GO:0007049: cell cycle4.01E-02
119GO:0048366: leaf development4.17E-02
120GO:0046777: protein autophosphorylation4.54E-02
RankGO TermAdjusted P value
1GO:0060090: binding, bridging0.00E+00
2GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity0.00E+00
3GO:0003729: mRNA binding6.50E-06
4GO:0003712: transcription cofactor activity9.84E-05
5GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.54E-04
6GO:0019829: cation-transporting ATPase activity2.11E-04
7GO:0050833: pyruvate transmembrane transporter activity2.11E-04
8GO:0004843: thiol-dependent ubiquitin-specific protease activity3.23E-04
9GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway4.15E-04
10GO:0005086: ARF guanyl-nucleotide exchange factor activity4.15E-04
11GO:0003730: mRNA 3'-UTR binding7.68E-04
12GO:0003779: actin binding1.74E-03
13GO:0015386: potassium:proton antiporter activity1.79E-03
14GO:0004386: helicase activity1.96E-03
15GO:0019888: protein phosphatase regulator activity2.14E-03
16GO:0005388: calcium-transporting ATPase activity2.14E-03
17GO:0043424: protein histidine kinase binding3.08E-03
18GO:0004402: histone acetyltransferase activity4.37E-03
19GO:0030276: clathrin binding4.60E-03
20GO:0015385: sodium:proton antiporter activity5.81E-03
21GO:0051015: actin filament binding5.81E-03
22GO:0003684: damaged DNA binding6.07E-03
23GO:0008270: zinc ion binding7.65E-03
24GO:0004842: ubiquitin-protein transferase activity9.32E-03
25GO:0003697: single-stranded DNA binding9.73E-03
26GO:0005198: structural molecule activity1.26E-02
27GO:0000166: nucleotide binding1.54E-02
28GO:0016874: ligase activity1.77E-02
29GO:0008026: ATP-dependent helicase activity1.92E-02
30GO:0015297: antiporter activity2.63E-02
31GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.23E-02
32GO:0005515: protein binding3.56E-02
33GO:0046982: protein heterodimerization activity3.66E-02
34GO:0003682: chromatin binding3.86E-02
35GO:0008233: peptidase activity4.27E-02
36GO:0061630: ubiquitin protein ligase activity4.48E-02
RankGO TermAdjusted P value
1GO:0000111: nucleotide-excision repair factor 2 complex0.00E+00
2GO:0071942: XPC complex0.00E+00
3GO:0005681: spliceosomal complex1.23E-04
4GO:0030897: HOPS complex1.23E-04
5GO:0000139: Golgi membrane3.55E-04
6GO:0030127: COPII vesicle coat6.44E-04
7GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane8.97E-04
8GO:0015030: Cajal body1.47E-03
9GO:0000159: protein phosphatase type 2A complex1.79E-03
10GO:0005765: lysosomal membrane1.79E-03
11GO:0005884: actin filament1.79E-03
12GO:0031307: integral component of mitochondrial outer membrane1.96E-03
13GO:0019013: viral nucleocapsid2.14E-03
14GO:0030176: integral component of endoplasmic reticulum membrane2.50E-03
15GO:0043234: protein complex2.69E-03
16GO:0005634: nucleus3.58E-03
17GO:0005802: trans-Golgi network4.59E-03
18GO:0080008: Cul4-RING E3 ubiquitin ligase complex5.18E-03
19GO:0005768: endosome5.40E-03
20GO:0000932: P-body6.85E-03
21GO:0030529: intracellular ribonucleoprotein complex6.85E-03
22GO:0005829: cytosol7.52E-03
23GO:0031902: late endosome membrane1.10E-02
24GO:0005856: cytoskeleton1.26E-02
25GO:0031966: mitochondrial membrane1.37E-02
26GO:0005654: nucleoplasm2.12E-02
27GO:0009543: chloroplast thylakoid lumen2.16E-02
28GO:0005623: cell2.20E-02
29GO:0009705: plant-type vacuole membrane2.72E-02
30GO:0031969: chloroplast membrane4.32E-02
31GO:0005886: plasma membrane4.37E-02
32GO:0005789: endoplasmic reticulum membrane4.74E-02
Gene type



Gene DE type